HHsearch alignment of GI: 254781065 and MMDB domain: 2yx0_A_

>2yx0_A (A:) Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=98.88  E-value=6.3e-08  Score=76.64  Aligned_cols=212  Identities=11%  Similarity=0.030  Sum_probs=132.5

Q ss_pred             CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCC---CCCCHHHH----HHHHHHHHHC---------------CCE
Q ss_conf             8714520753799972743000001122330125555---67898999----9999999729---------------974
Q gi|254781065|r   87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKG---TVLSSKDT----EAALAYIQEK---------------SQI  144 (352)
Q Consensus        87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~---~~~~~~~~----~~~~~Yi~~~---------------~eI  144 (352)
                      .+..++++..+.+.+|..|+..|.||+..........   ...+.+.+    ..+++-....               ..+
T Consensus        63 ~~~~~~~~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (342)
T 2yx0_A           63 FYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNP  142 (342)
T ss_dssp             HHCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSC
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf             12634644488768412527779889998877777555455579899999999999998765326753026777751487


Q ss_pred             E-EEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC----
Q ss_conf             7-99972698132498999999999861998128987434356343433999999986259938999336995886----
Q gi|254781065|r  145 W-EVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF----  219 (352)
Q Consensus       145 ~-eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El----  219 (352)
                      . -++.+||+|++..+  +..+++.+....-.  +-+.|..  ..+.+  ++....+...  ..++...++.+.+-    
T Consensus       143 ~~~~~~~~gep~~~~~--~~~~~~~~~~~~~~--~~~~tn~--~~~~~--~~~~~~~~~~--~~~v~isl~~~~~~~~~~  212 (342)
T 2yx0_A          143 THAAISLSGEPMLYPY--MGDLVEEFHKRGFT--TFIVTNG--TIPER--LEEMIKEDKL--PTQLYVSITAPDIETYNS  212 (342)
T ss_dssp             CEEEECSSSCGGGSTT--HHHHHHHHHHTTCE--EEEEECS--CCHHH--HHHHHHTTCC--CSEEEEEECCSSHHHHHH
T ss_pred             CEEEEECCCCCCCCHH--HHHHHHHHHHCCCE--EEEECCC--CCHHH--HHHHHHHHCC--CCEEEECCCCCCHHHHHH
T ss_conf             5799946877545440--99999999863972--8995488--77258--9998864257--757996278999899998


Q ss_pred             ---------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-----CC
Q ss_conf             ---------9999999999998798982327986234578899999999999869824230113457652101-----18
Q gi|254781065|r  220 ---------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHF-----RL  285 (352)
Q Consensus       220 ---------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf-----~v  285 (352)
                               ...+.++++.++++|+.+....+++.|.||+  .+.++.+-+.++|+.--.++...+.+|+..+     ..
T Consensus       213 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~~~~~~~~g~n~~--~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~  290 (342)
T 2yx0_A          213 VNIPMIPDGWERILRFLELMRDLPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMP  290 (342)
T ss_dssp             HHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSC
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCC
T ss_conf             7187777789999999999996699889999986898878--89999999987499889986525568860112401499


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             6999999999999828886541066
Q gi|254781065|r  286 TIEEGQKIVASLKEKISGLCQPFYI  310 (352)
Q Consensus       286 ~~~~~~~i~~~l~~~lsG~~~P~~v  310 (352)
                      +.++-++..+.++....+.-.....
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~  315 (342)
T 2yx0_A          291 SHQDIREFAEALVKHLPGYHIEDEY  315 (342)
T ss_dssp             CHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             8899999999999872696642266