Query         gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 352
No_of_seqs    148 out of 661
Neff          5.4 
Searched_HMMs 33803
Date          Wed Jun  1 21:35:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781065.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2a5h_A L-lysine 2,3-aminomuta 100.0 3.9E-26 1.1E-30  205.3  21.7  248   75-324     1-248 (248)
  2 >1tv8_A MOAA, molybdenum cofac  99.5 7.7E-12 2.3E-16  104.3  21.5  253   83-346     2-277 (313)
  3 >3c8f_A Pyruvate formate-lyase  99.3 3.7E-11 1.1E-15   99.5  11.4  188   87-282    11-209 (245)
  4 >3iix_A Biotin synthetase, put  99.3   5E-10 1.5E-14   91.5  16.1  201   92-303    50-262 (348)
  5 >1olt_A Oxygen-independent cop  99.1 6.5E-09 1.9E-13   83.6  15.5  190   93-286    50-254 (364)
  6 >1r30_A Biotin synthase; SAM r  99.0 2.7E-08   8E-13   79.2  15.2  209   88-307    59-283 (369)
  7 >2yx0_A Radical SAM enzyme; pr  98.9 6.3E-08 1.9E-12   76.6  12.6  212   87-310    63-315 (342)
  8 >2z2u_A UPF0026 protein MJ0257  98.5 1.2E-06 3.6E-11   67.5   9.0  200   88-301    45-284 (311)
  9 >3can_A Pyruvate-formate lyase  98.3 6.1E-05 1.8E-09   55.5  14.6  123  143-276     3-134 (182)
 10 >2qgq_A Protein TM_1862; alpha  98.2 2.8E-05 8.2E-10   58.0  11.6  104   95-205     4-112 (112)
 11 >2a5h_A L-lysine 2,3-aminomuta  94.6   0.023 6.9E-07   37.3   2.6   28  325-352     1-28  (36)
 12 >1sfs_A Hypothetical protein;   86.4     1.5 4.3E-05   24.6   4.9  168  129-313    11-186 (240)
 13 >1xpj_A Hypothetical protein;   83.9     1.4 4.3E-05   24.6   4.0   69  217-285    23-97  (126)
 14 >3cog_A Cystathionine gamma-ly  81.1     1.5 4.6E-05   24.4   3.3  104  129-233    11-140 (142)
 15 >1cs1_A CGS, protein (cystathi  78.8     3.1   9E-05   22.3   4.2  104  129-233    11-140 (140)
 16 >2ex2_A Penicillin-binding pro  76.7     3.9 0.00012   21.6   4.2   34  146-180    22-59  (123)
 17 >3a2b_A Serine palmitoyltransf  73.6     6.6 0.00019   20.0   4.7   81  220-300    34-124 (131)
 18 >1w79_A D-alanyl-D-alanine car  73.6     4.6 0.00014   21.1   3.9   36  147-183    24-62  (129)
 19 >2iex_A Dihydroxynapthoic acid  72.3     2.9 8.7E-05   22.4   2.7   30  128-157    41-70  (211)
 20 >3a3d_A PBP4, penicillin-bindi  71.8     5.1 0.00015   20.8   3.8   35  147-182    24-61  (121)
 21 >2cvi_A 75AA long hypothetical  70.9     8.1 0.00024   19.3   4.9   54  127-180    11-71  (83)
 22 >2r8c_A Putative amidohydrolas  70.6     8.2 0.00024   19.3   8.6  107  128-239    41-190 (199)
 23 >2hz5_A Dynein light chain 2A,  70.6     8.2 0.00024   19.3   4.7   60  125-184     8-85  (106)
 24 >1a2z_A Pyrrolidone carboxyl p  70.4     5.6 0.00016   20.5   3.7   93  145-237     2-132 (220)
 25 >1w5d_A Penicillin-binding pro  69.0     6.3 0.00019   20.1   3.8   35  147-182    24-61  (125)
 26 >3fdu_A Putative enoyl-COA hyd  68.9     8.9 0.00026   19.1   4.7   32  128-159    34-65  (266)
 27 >1byr_A Protein (endonuclease)  68.1     9.2 0.00027   18.9   7.1   84  185-275     8-91  (155)
 28 >1gc0_A Methionine gamma-lyase  67.9     9.3 0.00027   18.9   5.3  101  129-230    11-137 (138)
 29 >1e5e_A MGL, methionine gamma-  67.2     9.6 0.00028   18.8   7.9  102  129-236    11-143 (146)
 30 >1hux_A Activator of (R)-2-hyd  66.0     7.3 0.00022   19.7   3.6   66  100-173    66-140 (143)
 31 >2h5g_A Delta 1-pyrroline-5-ca  64.7     4.8 0.00014   20.9   2.5   91   95-193   167-267 (303)
 32 >2qgq_A Protein TM_1862; alpha  64.4     5.2 0.00016   20.7   2.6   98  190-301    10-112 (122)
 33 >3i4p_A Transcriptional regula  63.8      11 0.00033   18.4   6.7   56  127-182    22-83  (109)
 34 >2dky_A RHO-GTPase-activating   63.4     6.2 0.00018   20.2   2.8   43  221-263    21-75  (91)
 35 >3en9_A Glycoprotease, O-sialo  61.8     8.3 0.00025   19.3   3.3   43  131-176   111-153 (161)
 36 >2rfv_A Methionine gamma-lyase  61.4      12 0.00036   18.1   5.9   96  129-230    11-137 (139)
 37 >2cyy_A Putative HTH-type tran  60.6      13 0.00037   18.0   6.1   55  128-182    20-80  (94)
 38 >2ho4_A Haloacid dehalogenase-  60.0     8.3 0.00025   19.3   3.0   53  213-271    18-70  (140)
 39 >2e0n_A Precorrin-2 C20-methyl  58.5      14  0.0004   17.8   4.1   41  128-172    83-123 (133)
 40 >1x10_A Pyrrolidone-carboxylat  58.5      11 0.00032   18.5   3.4   92  146-238     2-132 (208)
 41 >1s4d_A Uroporphyrin-III C-met  56.6      15 0.00043   17.5   5.1   41  128-172    79-119 (130)
 42 >3bpt_A 3-hydroxyisobutyryl-CO  55.8     7.3 0.00022   19.7   2.1   27  128-154    35-61  (363)
 43 >3h75_A Periplasmic sugar-bind  55.6      15 0.00045   17.4   7.5  129  130-270     5-142 (142)
 44 >1vlu_A Gamma-glutamyl phospha  55.1     5.3 0.00016   20.7   1.3   55  132-193   199-257 (293)
 45 >1dci_A Dienoyl-COA isomerase;  55.1     8.3 0.00025   19.2   2.3   29  128-156    33-61  (249)
 46 >3l3s_A Enoyl-COA hydratase/is  54.5      16 0.00046   17.3   3.7   26  128-153    35-60  (209)
 47 >3i47_A Enoyl COA hydratase/is  53.5      13 0.00039   17.8   3.2  106  128-233    33-203 (221)
 48 >2h80_A STAR-related lipid tra  53.4     6.4 0.00019   20.1   1.5   43  221-263    19-73  (81)
 49 >3lac_A Pyrrolidone-carboxylat  52.9      13  0.0004   17.8   3.1  153  145-301     2-200 (215)
 50 >3kqf_A Enoyl-COA hydratase/is  52.1      16 0.00047   17.3   3.4   46  129-174    39-103 (207)
 51 >3kwp_A Predicted methyltransf  52.0      17 0.00051   17.0   4.6   44  127-173    74-117 (125)
 52 >2a6a_A Hypothetical protein T  51.2     7.2 0.00021   19.7   1.5   28  245-272   101-135 (149)
 53 >2w25_A Probable transcription  50.7      12 0.00037   18.0   2.7   49  129-177    23-77  (94)
 54 >2c1l_A Restriction endonuclea  50.3     4.5 0.00013   21.2   0.3   90  179-272    10-99  (184)
 55 >1l6r_A Hypothetical protein T  49.8      14 0.00041   17.7   2.8   71  213-292    17-92  (160)
 56 >3gkb_A Putative enoyl-COA hyd  49.8      18 0.00054   16.8   3.4   28  128-155    37-64  (227)
 57 >2cfx_A HTH-type transcription  49.8      18 0.00055   16.8   5.5   52  127-178    19-76  (89)
 58 >2e1c_A Putative HTH-type tran  48.9      19 0.00056   16.7   6.8   54  128-181    20-79  (94)
 59 >2q02_A Putative cytoplasmic p  48.8      19 0.00056   16.7   4.4  168  127-306    49-240 (272)
 60 >1pjq_A CYSG, siroheme synthas  48.5      19 0.00057   16.7   3.3   42  127-172    67-108 (118)
 61 >1pff_A Methionine gamma-lyase  48.4      15 0.00046   17.4   2.8  101  129-230    11-136 (137)
 62 >3eno_A Putative O-sialoglycop  48.1      16 0.00047   17.3   2.8   36  133-171   113-148 (161)
 63 >3giu_A Pyrrolidone-carboxylat  47.2      20 0.00058   16.6   3.2  148  145-302     4-202 (215)
 64 >3fzq_A Putative hydrolase; YP  46.7      16 0.00047   17.3   2.7   24  214-237    18-41  (160)
 65 >1aug_A Pyroglutamyl peptidase  46.5      20 0.00058   16.6   3.1  146  145-298     3-197 (215)
 66 >2o8r_A Polyphosphate kinase;   45.7      21 0.00061   16.5   3.1   14  252-265   324-337 (389)
 67 >1hzd_A AUH, AU-binding protei  45.1      22 0.00064   16.3   3.2   46  128-173    41-105 (213)
 68 >2ivn_A O-sialoglycoprotein en  44.8      17  0.0005   17.1   2.6   38  135-175   118-155 (164)
 69 >2bb3_A Cobalamin biosynthesis  44.6      16 0.00049   17.2   2.5   42  128-173    75-116 (123)
 70 >1wz8_A Enoyl-COA hydratase; l  43.9      18 0.00054   16.9   2.6   27  128-154    39-65  (244)
 71 >1zjj_A Hypothetical protein P  43.6     5.9 0.00017   20.3   0.1   50  215-270    14-63  (131)
 72 >2ppy_A Enoyl-COA hydratase; b  43.4      23 0.00068   16.1   3.4   27  128-154    37-63  (207)
 73 >2ews_A Pantothenate kinase; P  43.3      23 0.00068   16.1   4.5   36  139-176   125-160 (167)
 74 >2pq0_A Hypothetical conserved  42.6      20 0.00059   16.6   2.7   36  129-170    23-58  (158)
 75 >2fq6_A Cystathionine beta-lya  42.5     7.4 0.00022   19.6   0.5   96  129-230    11-137 (138)
 76 >1uiy_A Enoyl-COA hydratase; l  42.2      24  0.0007   16.0   3.4   29  128-156    28-56  (198)
 77 >1t57_A Conserved protein MTH1  41.5      24 0.00072   16.0   6.0   46  200-248    69-119 (206)
 78 >3g64_A Putative enoyl-COA hyd  41.5     7.7 0.00023   19.5   0.4   27  128-154    46-72  (236)
 79 >3lke_A Enoyl-COA hydratase; n  41.1      25 0.00073   15.9   3.1   26  128-153    33-58  (263)
 80 >2z6r_A Diphthine synthase; me  41.0      25 0.00073   15.9   3.9   37  131-171    67-103 (122)
 81 >1vjr_A 4-nitrophenylphosphata  40.5      21 0.00061   16.5   2.5   51  214-270    29-79  (145)
 82 >2hx1_A Predicted sugar phosph  39.9      17  0.0005   17.1   1.9   52  216-273    28-79  (162)
 83 >1i1g_A Transcriptional regula  39.2      26 0.00078   15.7   5.2   53  127-179    19-78  (87)
 84 >3ir2_A DNA DC->DU-editing enz  39.0      24 0.00072   15.9   2.7   75  132-211    83-162 (207)
 85 >1rkq_A Hypothetical protein Y  38.8      27 0.00079   15.7   2.9   36  129-170    25-60  (176)
 86 >3bf0_A Protease 4; bacterial,  38.7      27 0.00079   15.7   5.5   54  127-182    29-86  (223)
 87 >3kd9_A Coenzyme A disulfide r  38.6      27  0.0008   15.6   5.6   50  194-243    41-92  (120)
 88 >3h0u_A Putative enoyl-COA hyd  37.3      25 0.00074   15.9   2.5   47  128-174    36-104 (289)
 89 >3lhk_A Putative DNA binding p  37.2      28 0.00084   15.5   5.8   95  102-210     2-100 (104)
 90 >2q35_A CURF; crotonase, lyase  36.6      29 0.00085   15.4   3.4   40  128-167    32-71  (243)
 91 >1nz8_A Transcription antiterm  36.6      29 0.00085   15.4   3.2   86   78-172    33-118 (119)
 92 >1va0_A Uroporphyrin-III C-met  36.3      29 0.00086   15.4   5.6   41  128-172    62-102 (120)
 93 >2djw_A Probable transcription  36.2      28 0.00083   15.5   2.6   56  127-182    11-73  (92)
 94 >2gqq_A Leucine-responsive reg  36.2      29 0.00087   15.4   4.1   53  127-179    22-81  (100)
 95 >2fp4_B Succinyl-COA ligase [G  35.6      30 0.00089   15.3   7.4   45  127-171    58-102 (152)
 96 >2zvb_A Precorrin-3 C17-methyl  35.6      30 0.00089   15.3   4.7   40  128-171    61-100 (131)
 97 >2c4n_A Protein NAGD; nucleoti  35.3      13 0.00039   17.9   0.8   70  195-276    26-96  (144)
 98 >1mj3_A Enoyl-COA hydratase, m  35.1      30  0.0009   15.3   3.7   28  128-155    36-63  (238)
 99 >2cb1_A O-acetyl homoserine su  35.1      30  0.0009   15.3   3.1  100  129-230    11-135 (135)
100 >3jyv_N 40S ribosomal protein   34.6       8 0.00024   19.4  -0.4   20   86-116    23-42  (50)
101 >2qbu_A Precorrin-2 methyltran  34.5      31 0.00092   15.2   6.2   38  131-172    84-121 (131)
102 >2pqm_A Cysteine synthase; OAS  34.4      31 0.00092   15.2   3.0   88  131-236     9-99  (109)
103 >1pjh_A Enoyl-COA isomerase; E  33.9      32 0.00094   15.1   3.4   27  128-154    38-64  (280)
104 >3l49_A ABC sugar (ribose) tra  33.8      32 0.00094   15.1   3.5  120  132-261     6-131 (141)
105 >3gk0_A PNP synthase, pyridoxi  33.1      20 0.00058   16.6   1.4   12  160-171   142-153 (278)
106 >2p5v_A Transcriptional regula  32.8      33 0.00098   15.0   6.3   53  128-180    22-81  (102)
107 >1ble_A Fructose permease; pho  32.6      33 0.00098   15.0   2.5   38  219-260   123-160 (163)
108 >1q52_A MENB; lyase, structura  32.6      33 0.00098   15.0   3.4   27  128-154    66-92  (290)
109 >1nrw_A Hypothetical protein,   32.6      33 0.00098   15.0   2.9   34  130-169    25-58  (159)
110 >1xto_A Coenzyme PQQ synthesis  32.5      20 0.00058   16.6   1.3   44  194-237   105-148 (150)
111 >2csu_A 457AA long hypothetica  32.3      34 0.00099   15.0   7.4  133   95-240    20-159 (183)
112 >1m5w_A Pyridoxal phosphate bi  32.2      34   0.001   15.0   3.2   16  167-182   201-216 (243)
113 >1jbq_A Cystathionine beta-syn  32.0      34   0.001   14.9   4.1   81  145-240    26-107 (108)
114 >2j5i_A P-hydroxycinnamoyl COA  31.5      35   0.001   14.9   3.9   27  128-154    38-64  (211)
115 >2b30_A Pvivax hypothetical pr  30.9      35   0.001   14.8   2.4   23  215-237    42-64  (192)
116 >1wdk_A Fatty oxidation comple  30.7      36  0.0011   14.8   3.4  126  128-253    37-230 (284)
117 >2nu8_B SCS-beta, succinyl-COA  30.4      36  0.0011   14.8   7.6   45  127-171    57-101 (151)
118 >3epr_A Hydrolase, haloacid de  30.3      25 0.00073   15.9   1.5   18  219-236    22-39  (154)
119 >1vsq_C Mannose-specific phosp  30.0      37  0.0011   14.7   2.5   38  219-260   125-162 (165)
120 >3f9r_A Phosphomannomutase; tr  29.9      37  0.0011   14.7   2.8   24  214-237    17-40  (142)
121 >3etc_A AMP-binding protein; a  29.4      37  0.0011   14.6   3.6   37  284-320    53-93  (105)
122 >2pn6_A ST1022, 150AA long hyp  29.3      38  0.0011   14.6   6.6   56  127-182    21-83  (97)
123 >2zbc_A 83AA long hypothetical  29.1      38  0.0011   14.6   6.2   52  128-179    12-70  (83)
124 >2ej5_A Enoyl-COA hydratase su  29.1      38  0.0011   14.6   3.4   49  128-176    32-97  (199)
125 >2vx2_A Enoyl-COA hydratase do  29.0      35   0.001   14.8   2.1   53   87-152    33-86  (230)
126 >1y7l_A O-acetylserine sulfhyd  28.9      38  0.0011   14.6   3.0   57  181-240    47-103 (105)
127 >2j5g_A ALR4455 protein; enzym  28.2      39  0.0012   14.5   3.4  108  128-235    53-224 (263)
128 >1f06_A MESO-diaminopimelate D  28.2      35   0.001   14.8   2.0  126  162-303    15-145 (154)
129 >1wr8_A Phosphoglycolate phosp  28.1      36  0.0011   14.7   2.1   41  129-175    23-63  (162)
130 >2v03_A Cysteine synthase B; p  28.0      39  0.0012   14.5   4.8   57  182-241    48-104 (109)
131 >3klj_A NAD(FAD)-dependent deh  27.8      40  0.0012   14.5   4.6   50  194-243    34-86  (102)
132 >1sg4_A 3,2-trans-enoyl-COA is  27.4      40  0.0012   14.4   3.4   26  128-153    33-58  (260)
133 >1wkv_A Cysteine synthase; hom  27.4      40  0.0012   14.4   3.2   57  181-240    45-101 (102)
134 >3h02_A Naphthoate synthase; I  27.2      41  0.0012   14.4   3.4  107  128-234    56-228 (265)
135 >3dnp_A Stress response protei  26.9      41  0.0012   14.3   2.9   37  129-171    26-62  (175)
136 >1yv9_A Hydrolase, haloacid de  26.9      36  0.0011   14.7   1.9   20  218-237    21-40  (154)
137 >1nrz_A PTS system, sorbose-sp  26.7      42  0.0012   14.3   2.5   38  219-260   122-159 (164)
138 >2oaj_A Protein SNI1; WD40 rep  26.6      27  0.0008   15.6   1.2   18  139-156    17-34  (77)
139 >2oyc_A PLP phosphatase, pyrid  26.5      42  0.0012   14.3   3.9   77  191-273     8-86  (166)
140 >1ef8_A Methylmalonyl COA deca  26.2      42  0.0013   14.3   2.8  105  129-233    34-201 (221)
141 >2a7k_A CARB; crotonase, antib  25.8      43  0.0013   14.2   3.6  108  128-235    29-200 (250)
142 >3g7s_A Long-chain-fatty-acid-  25.4      35   0.001   14.9   1.6   30  291-320    54-87  (105)
143 >3js3_A 3-dehydroquinate dehyd  25.3      44  0.0013   14.2   8.0  109  127-239    61-174 (258)
144 >3ipl_A 2-succinylbenzoate--CO  24.9      45  0.0013   14.1   2.9   26  286-311    50-75  (103)
145 >2q3b_A Cysteine synthase A; p  24.9      45  0.0013   14.1   4.6   57  181-240    47-104 (105)
146 >3gow_A PAAG, probable enoyl-C  24.7      45  0.0013   14.1   3.4  107  128-234    29-197 (254)
147 >1nzy_A Dehalogenase, 4-chloro  24.6      45  0.0013   14.1   3.4  127  128-254    32-228 (243)
148 >2egu_A Cysteine synthase; O-a  24.4      46  0.0013   14.0   3.2   58  181-241    47-104 (106)
149 >1zj8_A Probable ferredoxin-de  24.3      46  0.0014   14.0   5.6  114  147-266    64-207 (211)
150 >1ju2_A HydroxynitrIle lyase;   24.2      46  0.0014   14.0   2.9   28  255-282     8-35  (105)
151 >1ve2_A Uroporphyrin-III C-met  24.0      46  0.0014   14.0   4.9   39  129-171    66-104 (115)
152 >1jw2_A Hemolysin expression m  23.3      46  0.0014   14.0   1.9   31    2-34     14-49  (72)
153 >2h3g_X Biosynthetic protein;   23.1      48  0.0014   13.9   2.5   24  131-154   108-132 (147)
154 >2e9l_A Cytosolic beta-glucosi  22.9      49  0.0014   13.8   4.8   69  150-219    47-127 (469)
155 >1a4s_A ALDH, betaine aldehyde  22.7      29 0.00086   15.4   0.7   30  281-315   237-266 (310)
156 >1oih_A Putative alkylsulfatas  22.4      48  0.0014   13.9   1.8  121  216-343    34-160 (184)
157 >3djc_A Type III pantothenate   22.4      50  0.0015   13.8   3.6   28  131-158    79-109 (119)
158 >1wde_A Probable diphthine syn  22.4      50  0.0015   13.8   3.9   44  127-172    66-110 (120)
159 >3fvv_A Uncharacterized protei  22.2      50  0.0015   13.7   3.2   42  122-169    12-53  (156)
160 >1rqb_A Transcarboxylase 5S su  22.1      50  0.0015   13.7  10.4  109  127-242   142-253 (359)
161 >2q4a_A Clavaminate synthase-l  21.9      51  0.0015   13.7   1.9  111  219-340    46-164 (185)
162 >2imp_A Lactaldehyde dehydroge  21.9      32 0.00094   15.1   0.8  165  129-314    70-253 (291)
163 >3bex_A Type III pantothenate   21.6      41  0.0012   14.3   1.4   29  131-159    78-106 (115)
164 >2w8n_A Succinate-semialdehyde  21.3      52  0.0015   13.6   3.8   20  282-301   233-252 (299)
165 >2nyt_A Probable C->U-editing   21.2      52  0.0016   13.6   4.2   23  162-184    98-120 (190)
166 >2np9_A DPGC; protein inhibito  21.1      53  0.0016   13.6   3.1   25  128-152    49-73  (207)
167 >1bqc_A Protein (beta-mannanas  21.0      52  0.0015   13.6   1.7  131  129-260   105-246 (302)
168 >1o58_A O-acetylserine sulfhyd  20.8      53  0.0016   13.6   3.2   90  133-240    10-101 (102)
169 >3ite_A SIDN siderophore synth  20.7      24 0.00071   16.0   0.0   34  288-321   169-207 (236)
170 >2arf_A Wilson disease ATPase;  20.7      54  0.0016   13.5   2.2   29  127-156   130-158 (165)
171 >3b40_A PVDM, probable dipepti  20.6      54  0.0016   13.5   6.3   67  195-265   218-292 (417)
172 >1jfw_A TAT protein; HIV-1, he  20.5      29 0.00084   15.5   0.3   11  103-113    28-38  (86)
173 >1g5t_A COB(I)alamin adenosylt  20.3      54  0.0016   13.5   2.4   19  135-153   144-162 (196)
174 >2puz_A Imidazolonepropionase;  20.1      48  0.0014   13.9   1.4  101  135-240   132-248 (298)
175 >1cbf_A Cobalt-precorrin-4 tra  20.0      55  0.0016   13.4   5.3   41  128-172    80-120 (130)

No 1  
>>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342)
Probab=99.95  E-value=3.9e-26  Score=205.30  Aligned_cols=248  Identities=41%  Similarity=0.800  Sum_probs=234.2

Q ss_pred             CCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             37310000076887145207537999727430000011223301255556789899999999997299747999726981
Q gi|254781065|r   75 EDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus        75 ~DPl~E~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      .||+.|....|+++..|+|+.++.+.+|..|+..|+||+++...+.. ....+.+.+.+++..++....+++|++|||+|
T Consensus         1 ~D~l~e~~~~~~~~~~~~~~~~~~i~~T~~Cn~~C~~C~~~~~~~~~-~~~~~~e~i~~~~~~~~~~~~~~~i~~~ggep   79 (248)
T 2a5h_A            1 EDPLHEDTDSPVPGLTHRYPDRVLLLITDXCSXYCRHCTRRRFAGQS-DDSXPXERIDKAIDYIRNTPQVRDVLLSGGDA   79 (248)
T ss_dssp             SSTTCTTTSCSBTTEECCSSSEEEEEEESCCSSCCTTCTTTTTTTSS-SSBCCHHHHHHHHHHHHTCTTCCEEEEEESCT
T ss_pred             CCCCCCCCCCCCCCCEEECCCEEEEEECCCCCEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             47653111356887313337547998414301004512542335763-34214999999999998389836999856985


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCC
Q ss_conf             32498999999999861998128987434356343433999999986259938999336995886999999999999879
Q gi|254781065|r  155 LILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAG  234 (352)
Q Consensus       155 l~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~G  234 (352)
                      ++.+...+.+++..+.+..+...+++.|......++++...+...+.... -..-..+..+-........+++++++++|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  158 (248)
T 2a5h_A           80 LLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNXLKKYH-PVWLNTHFNHPNEITEESTRACQLLADAG  158 (248)
T ss_dssp             TSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGGC-SEEEEECCCSGGGCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf             62688999999999970899754888705542461656899998530266-48997214765443034899999999779


Q ss_pred             CEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             89823279862345788999999999998698242301134576521011869999999999998288865410663178
Q gi|254781065|r  235 IILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLP  314 (352)
Q Consensus       235 v~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p  314 (352)
                      ..+.-.++++.|.||+.+.+.++.+.+.++|+.+.+++...+.+|+.++..+.....++++.+...++++..+.++.+++
T Consensus       159 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~t~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  238 (248)
T 2a5h_A          159 VPLGNQSVLLRGVNDCVHVXKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAP  238 (248)
T ss_dssp             CCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCGGGCCEEEEEET
T ss_pred             CEEEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             86987461678615877899999999984883899976126775232037889999999998775389744303764168


Q ss_pred             CCCCCEEECC
Q ss_conf             8888235551
Q gi|254781065|r  315 GGYGKVKIDT  324 (352)
Q Consensus       315 ~~~GKv~i~~  324 (352)
                      ++.||++|.|
T Consensus       239 ~~~G~l~i~p  248 (248)
T 2a5h_A          239 GGGGKTPVXP  248 (248)
T ss_dssp             TTTEEEECCC
T ss_pred             CCCCCCCCCC
T ss_conf             8988500566


No 2  
>>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313)
Probab=99.54  E-value=7.7e-12  Score=104.27  Aligned_cols=253  Identities=13%  Similarity=0.190  Sum_probs=168.1

Q ss_pred             CCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCC-----CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             0768871452075379997274300000112233012555-----56789899999999997299747999726981324
Q gi|254781065|r   83 HSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQK-----GTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLIL  157 (352)
Q Consensus        83 ~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~-----~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l  157 (352)
                      .+++++..|+|+..+.+.+|..|+..|+||+.....+...     ....+.+++.+.++.+.. ..+..|.++||+|++.
T Consensus         2 ~~~~~~~~~~~~~~~~i~~t~~Cn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~GGEP~l~   80 (313)
T 1tv8_A            2 VEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITGGEPLMR   80 (313)
T ss_dssp             -CCCBCTTSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEESSCGGGS
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCC
T ss_conf             341725899813847998424017879688975006777765761035899999999999997-6981997479840026


Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCC-CCEEEEECCCCHHH---C------CHHHHHHH
Q ss_conf             98999999999861998128987434356343433999999986259-93899933699588---6------99999999
Q gi|254781065|r  158 SHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAG-KPVYIAIHANHPYE---F------SEEAIAAI  227 (352)
Q Consensus       158 ~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~-~~~~iv~H~NHp~E---l------t~~~~~A~  227 (352)
                      ++  +.+++..+.+...+..+.+.|-.      .++++....+...+ ..+.+....-.+..   +      -..+.+++
T Consensus        81 ~~--~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~isi~~~~~~~~~~~~~~~~~~~~~~~~i  152 (313)
T 1tv8_A           81 RD--LDVLIAKLNQIDGIEDIGLTTNG------LLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQI  152 (313)
T ss_dssp             TT--HHHHHHHHTTCTTCCEEEEEECS------TTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHH
T ss_pred             CH--HHHHHHHHHHCCCCCCEECCCCC------CCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHEECCCCCCHHHHHH
T ss_conf             10--69999986402544310013331------23406899999839998872255788888756200477521012689


Q ss_pred             HHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99998798982327986234578899999999999869824230113457652101186999999999999828886541
Q gi|254781065|r  228 SRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQP  307 (352)
Q Consensus       228 ~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P  307 (352)
                      +.++++|+.+....+.+.+.|  .+.+.++.+.+.++|+....+.......+...+.-......................
T Consensus       153 ~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (313)
T 1tv8_A          153 DYATSIGLNVKVNVVIQKGIN--DDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVE  230 (313)
T ss_dssp             HHHHHTTCEEEEEEEECTTTT--GGGHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSCEEEEC
T ss_pred             HHHHHCCCCEEEEEEECCCCC--CCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             999985998336368616755--001289999998527430232552055455533224677899988888743554333


Q ss_pred             EEEEE-------CCCCCCCE-EECCHHHEEECCCEEEEECCCCCEEE
Q ss_conf             06631-------78888823-55510212313987999816998871
Q gi|254781065|r  308 FYILD-------LPGGYGKV-KIDTHNIKKVGNGSYCITDHHNIVHD  346 (352)
Q Consensus       308 ~~v~d-------~p~~~GKv-~i~~~~~~~~~~~~~~l~~~~g~~~~  346 (352)
                      .....       ..+..... ...+.............-+++|.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dG~v~~  277 (313)
T 1tv8_A          231 PKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYG  277 (313)
T ss_dssp             CSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEES
T ss_pred             CCCCCCCHHHHEECCCCCCCCEEEEECCCCCCCCCEEEECCCCEEEE
T ss_conf             33467721220000348730114440266568755057614726986


No 3  
>>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:)
Probab=99.31  E-value=3.7e-11  Score=99.47  Aligned_cols=188  Identities=11%  Similarity=0.101  Sum_probs=139.2

Q ss_pred             CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCHHHHHH
Q ss_conf             871452075379997274300000112233012555567898999999999972--997479997269813249899999
Q gi|254781065|r   87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQE--KSQIWEVIFTGGDPLILSHKRLQK  164 (352)
Q Consensus        87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~--~~eI~eVilSGGDPl~l~~~~L~~  164 (352)
                      +...|.+|..+.+.+|..|+..|.||+.....+.......+.+++...++-+.+  .+.+..+.++||+|++..+ .+..
T Consensus        11 ~~~~~~~~~~~~i~~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGep~l~~~-~~~~   89 (245)
T 3c8f_A           11 SCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE-FVRD   89 (245)
T ss_dssp             EEECTTSSSEEEEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHH-HHHH
T ss_pred             EEEEEECCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHH
T ss_conf             940682797289998689688798999803318679917889999999999999851588668715677442678-9999


Q ss_pred             HHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC-------CHHHHHHHHHHHHCCCE
Q ss_conf             99998619981289874343563434339999999862599-38999336995886-------99999999999987989
Q gi|254781065|r  165 VLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF-------SEEAIAAISRLANAGII  236 (352)
Q Consensus       165 ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El-------t~~~~~A~~~L~~~Gv~  236 (352)
                      +++.+.+ ..+....+.+-.      ..+++.+..+...+. .+.+...-..+.-.       ...+.++++.+.+.|..
T Consensus        90 l~~~~~~-~~~~~~~~tn~~------~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  162 (245)
T 3c8f_A           90 WFRACKK-EGIHTCLDTNGF------VRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVK  162 (245)
T ss_dssp             HHHHHHT-TTCCEEEEECCC------CCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHH-HCCCEEEECCCC------CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf             9999886-357146613773------114455565421332101145001006788876273326667665454225551


Q ss_pred             EEECHHHHHCCCCCHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCC
Q ss_conf             8232798623457889999999999986982-423011345765210
Q gi|254781065|r  237 LLSQSVLLKGINDDPEILANLMRTFVELRIK-PYYLHHPDLAAGTSH  282 (352)
Q Consensus       237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~-PYYl~~~d~v~G~~h  282 (352)
                      +.-+++++.|.||+.+.+.++.+-+.+.|.. ...+....+..|+..
T Consensus       163 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  209 (245)
T 3c8f_A          163 VWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKW  209 (245)
T ss_dssp             EEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHH
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
T ss_conf             37766323898899999999999998579975588714762564247


No 4  
>>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:)
Probab=99.28  E-value=5e-10  Score=91.49  Aligned_cols=201  Identities=13%  Similarity=0.091  Sum_probs=147.9

Q ss_pred             ECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20753799972743000001122330125555678989999999999729974799972698132498999999999861
Q gi|254781065|r   92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus        92 kY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +.+-.+.+..|..|+.+|.||.-....+.......+.+++.+.++.+++. .+.+|+++||+|+.+.+..+..+...+..
T Consensus        50 ~~~~~~~i~~t~gC~~~C~fC~~~~~~~~~~~~~~~~e~i~~~i~~~~~~-g~~~~~~~~g~p~~~~~~~~~~~~~~~~~  128 (348)
T 3iix_A           50 EVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQF-GAKTIVLQSGEDPYXMPDVISDIVKEIKK  128 (348)
T ss_dssp             EEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHT-TCSEEEEEESCCGGGTTHHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             76999999877886998957998666898652314578899999999971-88256540265234527888899886401


Q ss_pred             CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC-EEEEECCCCHHHC--------CHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             99812898743435634343399999998625993-8999336995886--------99999999999987989823279
Q gi|254781065|r  172 IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP-VYIAIHANHPYEF--------SEEAIAAISRLANAGIILLSQSV  242 (352)
Q Consensus       172 i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~-~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~v~nQsV  242 (352)
                      +...-..+         +.-++++.++.|++.+.. +.+...--++.-+        ...+.++++.+++.|+.+.-...
T Consensus       129 ~~~~~~~~---------~~~~~~~~~~~l~~~g~~~v~i~les~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~i  199 (348)
T 3iix_A          129 MGVAVTLS---------LGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSM  199 (348)
T ss_dssp             TSCEEEEE---------CCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBE
T ss_pred             CCHHCCCC---------CCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             20100234---------441168999999874262788444423345521000033201567777787876531241057


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCC
Q ss_conf             8623457889999999999986982423011345765210118---699999999999982888
Q gi|254781065|r  243 LLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL---TIEEGQKIVASLKEKISG  303 (352)
Q Consensus       243 LLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v---~~~~~~~i~~~l~~~lsG  303 (352)
                      + -.-+++.+.+.++.+.+.++|+.-.+++...+.+|+..+..   +.++........+.....
T Consensus       200 ~-g~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (348)
T 3iix_A          200 V-GLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPD  262 (348)
T ss_dssp             E-SCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTT
T ss_pred             E-CCCCCCHHHHHHHHHHHHHHHHCEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             6-27765668888889999875533405510123599975568998989999999999987898


No 5  
>>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364)
Probab=99.12  E-value=6.5e-09  Score=83.59  Aligned_cols=190  Identities=15%  Similarity=0.182  Sum_probs=142.1

Q ss_pred             CCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHH----HHHHHHH--HCCCEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             0753799972743000001122330125555678989999----9999997--299747999726981324989999999
Q gi|254781065|r   93 YPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTE----AALAYIQ--EKSQIWEVIFTGGDPLILSHKRLQKVL  166 (352)
Q Consensus        93 Y~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~----~~~~Yi~--~~~eI~eVilSGGDPl~l~~~~L~~ll  166 (352)
                      ....+++.++..|+..|.||.-..+.+....  .+.+..+    +..+.+.  ....+..+.++||+|.......+..++
T Consensus        50 ~~~~~~~~~~rGC~~~C~fC~~~~~~~~~~~--~~~~~~~~~~~ei~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  127 (364)
T 1olt_A           50 ERPLSLYVHIPFCHKLCYFCGCNKIVTRQQH--KADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLM  127 (364)
T ss_dssp             TSCEEEEEEECEESSCCTTCCSSCEECSCTH--HHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf             9953999971898988899988256588855--19999999999999977663899746999748751659999999999


Q ss_pred             HHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC--------CHHHHHHHHHHHHCCCEE
Q ss_conf             998619981289874343563434339999999862599-38999336995886--------999999999999879898
Q gi|254781065|r  167 KTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF--------SEEAIAAISRLANAGIIL  237 (352)
Q Consensus       167 ~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~v  237 (352)
                      +.++++.....+.+-+  ..+.+..+++++++.|++.+. .+.+-...-+++-+        -+.+.++++.++++|+..
T Consensus       128 ~~i~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~~G~~~i~ig~es~~~~~~~~~~k~~~~~~~~~~i~~~~~~g~~~  205 (364)
T 1olt_A          128 KLLRENFQFNADAEIS--IEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTS  205 (364)
T ss_dssp             HHHHHHSCEEEEEEEE--EEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHCCCCCCCEEE--EEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999865777662147--98349987277899997379987998368686788866406687899999999999842553


Q ss_pred             EECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             2327986234578899999999999869824230113457652101186
Q gi|254781065|r  238 LSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLT  286 (352)
Q Consensus       238 ~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~  286 (352)
                      .+-.++.-.-+++.+.+.++.+.+.++++.--.++...+.+|+..+..+
T Consensus       206 v~~~~i~g~p~et~~~~~~~l~~~~~~~~~~~~i~~~~p~~gt~~~~~~  254 (364)
T 1olt_A          206 TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRK  254 (364)
T ss_dssp             CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGG
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECEECCCHHHHHHC
T ss_conf             4034047799842677899999998408983344311007842776623


No 6  
>>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:)
Probab=99.03  E-value=2.7e-08  Score=79.22  Aligned_cols=209  Identities=12%  Similarity=0.133  Sum_probs=143.2

Q ss_pred             CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHH
Q ss_conf             7145207537999727430000011223301255--55678989999999999729974799972698132498999999
Q gi|254781065|r   88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQ--KGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKV  165 (352)
Q Consensus        88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~--~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~l  165 (352)
                      .-..+++..+++.+|..|+..|.||.-....+..  .....+.+++.+.++.++.. .++.|.++||+|++..+ .+..+
T Consensus        59 ~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~-g~~~i~~~gg~~~~~~~-~~~~~  136 (369)
T 1r30_A           59 DPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA-GSTRFCMGAAWKNPHER-DMPYL  136 (369)
T ss_dssp             CTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT-TCSEEEEEECCSSCCTT-THHHH
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCCCCHH-HHHHH
T ss_conf             98979998687744899998792299834189998754557878999999999973-99799998735886526-99999


Q ss_pred             HHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---------CHHHHHHHHHHHHCCCE
Q ss_conf             999861998128987434356343433999999986259938999336995886---------99999999999987989
Q gi|254781065|r  166 LKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---------SEEAIAAISRLANAGII  236 (352)
Q Consensus       166 l~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---------t~~~~~A~~~L~~~Gv~  236 (352)
                      ++.++......      -...+.+..+|++.++.|++.+.. .+.....-.+|.         -..+.++++.++++|+.
T Consensus       137 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~  209 (369)
T 1r30_A          137 EQMVQGVKAMG------LEACMTLGTLSESQAQRLANAGLD-YYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK  209 (369)
T ss_dssp             HHHHHHHHHTT------SEEEEECSSCCHHHHHHHHHHCCC-EEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCE
T ss_pred             HHHHHHHHHCC------CEEECCCCCCCHHHHHHHHHCCCC-EEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999865238------445305577899999999847860-89753020201220467778899999999999986991


Q ss_pred             EEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEE--EEECCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             823279862345788999999999998698242--30113457652101---186999999999999828886541
Q gi|254781065|r  237 LLSQSVLLKGINDDPEILANLMRTFVELRIKPY--YLHHPDLAAGTSHF---RLTIEEGQKIVASLKEKISGLCQP  307 (352)
Q Consensus       237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PY--Yl~~~d~v~G~~hf---~v~~~~~~~i~~~l~~~lsG~~~P  307 (352)
                      +....++  |.+++.+.+.++...+.++++.+.  +++...+.+|+..+   .....+........+........+
T Consensus       210 ~~~~~i~--g~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (369)
T 1r30_A          210 VCSGGIV--GLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVR  283 (369)
T ss_dssp             EECCEEE--CSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEE
T ss_pred             EEEEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf             6521483--6999999999999999865889888760510689998644467999999999999999978887626


No 7  
>>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:)
Probab=98.88  E-value=6.3e-08  Score=76.64  Aligned_cols=212  Identities=11%  Similarity=0.030  Sum_probs=132.5

Q ss_pred             CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCC---CCCCHHHH----HHHHHHHHHC---------------CCE
Q ss_conf             8714520753799972743000001122330125555---67898999----9999999729---------------974
Q gi|254781065|r   87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKG---TVLSSKDT----EAALAYIQEK---------------SQI  144 (352)
Q Consensus        87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~---~~~~~~~~----~~~~~Yi~~~---------------~eI  144 (352)
                      .+..++++..+.+.+|..|+..|.||+..........   ...+.+.+    ..+++-....               ..+
T Consensus        63 ~~~~~~~~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (342)
T 2yx0_A           63 FYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNP  142 (342)
T ss_dssp             HHCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSC
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf             12634644488768412527779889998877777555455579899999999999998765326753026777751487


Q ss_pred             E-EEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC----
Q ss_conf             7-99972698132498999999999861998128987434356343433999999986259938999336995886----
Q gi|254781065|r  145 W-EVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF----  219 (352)
Q Consensus       145 ~-eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El----  219 (352)
                      . -++.+||+|++..+  +..+++.+....-.  +-+.|..  ..+.+  ++....+...  ..++...++.+.+-    
T Consensus       143 ~~~~~~~~gep~~~~~--~~~~~~~~~~~~~~--~~~~tn~--~~~~~--~~~~~~~~~~--~~~v~isl~~~~~~~~~~  212 (342)
T 2yx0_A          143 THAAISLSGEPMLYPY--MGDLVEEFHKRGFT--TFIVTNG--TIPER--LEEMIKEDKL--PTQLYVSITAPDIETYNS  212 (342)
T ss_dssp             CEEEECSSSCGGGSTT--HHHHHHHHHHTTCE--EEEEECS--CCHHH--HHHHHHTTCC--CSEEEEEECCSSHHHHHH
T ss_pred             CEEEEECCCCCCCCHH--HHHHHHHHHHCCCE--EEEECCC--CCHHH--HHHHHHHHCC--CCEEEECCCCCCHHHHHH
T ss_conf             5799946877545440--99999999863972--8995488--77258--9998864257--757996278999899998


Q ss_pred             ---------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-----CC
Q ss_conf             ---------9999999999998798982327986234578899999999999869824230113457652101-----18
Q gi|254781065|r  220 ---------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHF-----RL  285 (352)
Q Consensus       220 ---------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf-----~v  285 (352)
                               ...+.++++.++++|+.+....+++.|.||+  .+.++.+-+.++|+.--.++...+.+|+..+     ..
T Consensus       213 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~~~~~~~~g~n~~--~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~  290 (342)
T 2yx0_A          213 VNIPMIPDGWERILRFLELMRDLPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMP  290 (342)
T ss_dssp             HHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSC
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCC
T ss_conf             7187777789999999999996699889999986898878--89999999987499889986525568860112401499


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             6999999999999828886541066
Q gi|254781065|r  286 TIEEGQKIVASLKEKISGLCQPFYI  310 (352)
Q Consensus       286 ~~~~~~~i~~~l~~~lsG~~~P~~v  310 (352)
                      +.++-++..+.++....+.-.....
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~  315 (342)
T 2yx0_A          291 SHQDIREFAEALVKHLPGYHIEDEY  315 (342)
T ss_dssp             CHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             8899999999999872696642266


No 8  
>>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:)
Probab=98.46  E-value=1.2e-06  Score=67.52  Aligned_cols=200  Identities=15%  Similarity=0.082  Sum_probs=114.5

Q ss_pred             CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCC-------CCCC------------------HHHHHHHHHHHH--H
Q ss_conf             714520753799972743000001122330125555-------6789------------------899999999997--2
Q gi|254781065|r   88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKG-------TVLS------------------SKDTEAALAYIQ--E  140 (352)
Q Consensus        88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~-------~~~~------------------~~~~~~~~~Yi~--~  140 (352)
                      ...++.|.++.+.+|..|+..|.||+..........       ....                  .+...+.++.+.  .
T Consensus        45 ~~~~~~~~~~~~~~~~~CNl~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~cn~~C~~c~~~~~~~~~i~~~~~~~  124 (311)
T 2z2u_A           45 YGIETHRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKE  124 (311)
T ss_dssp             HCCCGGGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHH
T ss_pred             ECCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             26146662432126310226794678977777666731012334379899999999999999864036665410566776


Q ss_pred             CCCEE-EEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC
Q ss_conf             99747-99972698132498999999999861998128987434356343433999999986259938999336995886
Q gi|254781065|r  141 KSQIW-EVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF  219 (352)
Q Consensus       141 ~~eI~-eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El  219 (352)
                      ...+. -|+++||+|++.++  +.+++..+.+..  -.+.|-|-...     +++.+    ...-..+.+..+.-.+...
T Consensus       125 ~~~~~~~~~~~GGepll~~~--~~~~~~~~~~~~--~~~~i~TNG~~-----~~~~~----~~~l~~~~is~~~~~~~~~  191 (311)
T 2z2u_A          125 ALEPKHVAISLSGEPTLYPY--LDELIKIFHKNG--FTTFVVSNGIL-----TDVIE----KIEPTQLYISLDAYDLDSY  191 (311)
T ss_dssp             HTSCCEEEECSSSCGGGSTT--HHHHHHHHHHTT--CEEEEEECSCC-----HHHHH----HCCCSEEEEECCCSSTTTC
T ss_pred             HCCCCEEEEECCCCCCCCCC--HHHHHHHHHHHC--CHHEEECCCCC-----HHHHH----HCCCCEEEEEECCCCHHHH
T ss_conf             42775799815887410027--999999986303--02100005542-----36776----2366168987357999999


Q ss_pred             C----------HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCCCH
Q ss_conf             9----------9999999999987989823279862345788999999999998--698242301134576521011869
Q gi|254781065|r  220 S----------EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVE--LRIKPYYLHHPDLAAGTSHFRLTI  287 (352)
Q Consensus       220 t----------~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~--~gV~PYYl~~~d~v~G~~hf~v~~  287 (352)
                      .          ..+.++ .++...|+++.-++++++|.+|+.+.+.++...+-.  +.+.||+-+-..+.........+.
T Consensus       192 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~i~~~i~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (311)
T 2z2u_A          192 RRICGGKKEYWESILNT-LDILKEKKRTCIRTTLIRGYNDDILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQH  270 (311)
T ss_dssp             ----CCCHHHHHHHHHH-HHHHTTSSSEEEEEEECTTTTCCGGGTHHHHHHHTCSEEEEEECC------------CCCCH
T ss_pred             HHHHCCCCCHHHHHHHH-HHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCH
T ss_conf             99868765639999999-99998669859999726686528999999987459888999600741466331630039989


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999999828
Q gi|254781065|r  288 EEGQKIVASLKEKI  301 (352)
Q Consensus       288 ~~~~~i~~~l~~~l  301 (352)
                      ++-.+..+.+....
T Consensus       271 ~~~~~~~~~~~~~~  284 (311)
T 2z2u_A          271 DEILKLAKMLDENS  284 (311)
T ss_dssp             HHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999987546


No 9  
>>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=98.31  E-value=6.1e-05  Score=55.52  Aligned_cols=123  Identities=18%  Similarity=0.185  Sum_probs=90.0

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH----
Q ss_conf             7479997269813249899999999986199812898743435634343399999998625993899933699588----
Q gi|254781065|r  143 QIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE----  218 (352)
Q Consensus       143 eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E----  218 (352)
                      .|+.|.+|||+||+-++ .+..+++.+.+..  -.+-+.|..  +++    ++....+...-  -++.+.++.+.+    
T Consensus         3 g~~~v~~tGGEPll~~d-~i~~i~~~~~~~g--~~~~l~Tng--~~~----~~~~~~~~~~~--~~i~isld~~~~~~~~   71 (182)
T 3can_A            3 AGGGVTFCGGEPLLHPE-FLIDILKRCGQQG--IHRAVDTTL--LAR----KETVDEVXRNC--ELLLIDLKSXDSTVHQ   71 (182)
T ss_dssp             -CCCEEECSSTGGGSHH-HHHHHHHHHHHTT--CCEEEECTT--CCC----HHHHHHHHHTC--SEEEEECCCSCHHHHH
T ss_pred             CCCCEEEECCCCCCCHH-HHHHHHHHHHHCC--CCEEEEECC--CHH----HHHHHHHHHHC--CHHCCCCCCCHHHHHH
T ss_conf             99848997133308988-9999999998779--929997252--110----77777665200--0002432200388888


Q ss_pred             -----CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             -----6999999999999879898232798623457889999999999986982423011345
Q gi|254781065|r  219 -----FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDL  276 (352)
Q Consensus       219 -----lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~  276 (352)
                           -...+.++++.|++.|+.+.-.+|+.+|.||+.+.+.++.+.+..+|+.-.+++....
T Consensus        72 ~~~~~~~~~~~~~i~~l~~~~~~~~i~~~~~~~~~d~~~ei~~~~~~~~~~~~~~~~i~~~~~  134 (182)
T 3can_A           72 TFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY  134 (182)
T ss_dssp             HHHSSCSHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             787302578886666676630231244302279759999999999999866998479866556


No 10 
>>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112)
Probab=98.24  E-value=2.8e-05  Score=57.95  Aligned_cols=104  Identities=20%  Similarity=0.286  Sum_probs=80.7

Q ss_pred             CEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH-----HHHHHHHH
Q ss_conf             5379997274300000112233012555567898999999999972997479997269813249899-----99999998
Q gi|254781065|r   95 DRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKR-----LQKVLKTL  169 (352)
Q Consensus        95 ~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~-----L~~ll~~L  169 (352)
                      -.+-+.++-.|+..|+||.-..+.+..  ...+.+.+.+-++++.+. .++++.+.++|-...+...     +.++++.+
T Consensus         4 ~~~~i~tsRGCp~~C~FC~~~~~~g~~--r~r~~~~v~~ei~~l~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (112)
T 2qgq_A            4 PYAYVKISDGCDRGCTFCSIPSFKGSL--RSRSIEDITREVEDLLKE-GKKEIILVAQDTTSYGIDLYRKQALPDLLRRL   80 (112)
T ss_dssp             SEEEEESBCCC-------------CCC--CBCCHHHHHHHHHHHHHT-TCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred             CEEEEEECCCCCCCCEECEEEEEECCE--EEECHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             509989867989977557342122972--870999999999999987-99689998503664554233443278887655


Q ss_pred             HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC
Q ss_conf             619981289874343563434339999999862599
Q gi|254781065|r  170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK  205 (352)
Q Consensus       170 ~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~  205 (352)
                      .+++....+|++|    ..|..++++|++.+++.++
T Consensus        81 ~~~~~~~~~~~~~----~~~~~i~~ell~~l~~~~k  112 (112)
T 2qgq_A           81 NSLNGEFWIRVXY----LHPDHLTEEIISAXLELDK  112 (112)
T ss_dssp             HTSSSSCEEEECC----CCGGGCCHHHHHHHHHCTT
T ss_pred             HCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCC
T ss_conf             3034411012123----4663332110000023775


No 11 
>>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:343-378)
Probab=94.58  E-value=0.023  Score=37.31  Aligned_cols=28  Identities=4%  Similarity=0.199  Sum_probs=25.7

Q ss_pred             HHHEEECCCEEEEECCCCCEEECCCCCC
Q ss_conf             0212313987999816998871898899
Q gi|254781065|r  325 HNIKKVGNGSYCITDHHNIVHDYPPKSS  352 (352)
Q Consensus       325 ~~~~~~~~~~~~l~~~~g~~~~yp~~~~  352 (352)
                      +|++++++++++||||+|.+..|++|.+
T Consensus         1 nYliSqs~~kVvLRNyEGVIttY~EP~~   28 (36)
T 2a5h_A            1 NYVISQSHDKVILRNFEGVITTYSEPIN   28 (36)
T ss_dssp             CCEEEEETTEEEEECTTCCEEEEECCTT
T ss_pred             CCCCCCCCCEEEEECCCCCEEEECCCCC
T ss_conf             4301478867999668873786458888


No 12 
>>1sfs_A Hypothetical protein; structural genomics, unknown function, possible bacterial lysozyme, PSI, protein structure initiative; 1.07A {Geobacillus stearothermophilus} (A:)
Probab=86.36  E-value=1.5  Score=24.61  Aligned_cols=168  Identities=15%  Similarity=0.056  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEE
Q ss_conf             99999999997299747999726981324989999999998619981289874343563434339999999862599389
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVY  208 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~  208 (352)
                      .+++....+++. ..|+.|-+-||-|-.|+.+.|..+++.+++-  ...-+...-+ +-.|-.+|.+.++.|++.+.+-.
T Consensus        11 ~~l~~~~~~~~~-~~~~~iy~GGGTPt~L~~~~l~~l~~~~~~~--f~~~~~~e~t-~E~~p~lt~~~l~~l~~~GvnRi   86 (240)
T 1sfs_A           11 VDLGTENLYFQS-NAMARGIWGVDSAQVVTDQLFQCVRTELGYP--KFWGRYLSEV-PNVSEGLTRDEIVRIRNYGVKVL   86 (240)
T ss_dssp             ------------------CEEEEECSSCCCHHHHHHHHHHTCCC--SEEEEESSCB-TTTBCBCCHHHHHHHHHTTCEEE
T ss_pred             CCCCCCEECCCC-CHHHHCCCCCCCCCCCCHHHHHHHHHCCCCE--EEEEEECCCC-CCCCCCCCHHHHHHHHHCCCEEE
T ss_conf             477883552475-1222003263213120699999998637815--7998766899-88467678899999998898799


Q ss_pred             EEECCCCHHHC----CHHHHHHHHHHHHCCCEEEECHHHHHCCC---CCHHHHHHHHH-HHHHCCCEEEEEECCCCCCCC
Q ss_conf             99336995886----99999999999987989823279862345---78899999999-999869824230113457652
Q gi|254781065|r  209 IAIHANHPYEF----SEEAIAAISRLANAGIILLSQSVLLKGIN---DDPEILANLMR-TFVELRIKPYYLHHPDLAAGT  280 (352)
Q Consensus       209 iv~H~NHp~El----t~~~~~A~~~L~~~Gv~v~nQsVLLkgVN---D~~~~l~~L~~-~L~~~gV~PYYl~~~d~v~G~  280 (352)
                      -+++.-.+..+    -..+.+++...+..|.+  ||+++.-.+.   +....-..++. .+...+...-=.         
T Consensus        87 SivQSf~~~~l~~~gR~~~~~~v~~a~~~G~~--~~~li~~~l~~~~~l~~~~i~~y~l~~~~~~~~~~~~---------  155 (240)
T 1sfs_A           87 PIYNAFREAVGYANGQVAARNAVFHARRLGIP--KNKLLFANIEDFFAVDAAWIAAWVETLYPTGYRPGLY---------  155 (240)
T ss_dssp             EEECCCSCBCCHHHHHHHHHHHHHHHHHTTCC--SSCEEEEECCTTSCBCHHHHHHHHHHHHHHTCEEEEE---------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE---------
T ss_conf             98211765214888878999999999973999--8968999841454557899999999999759975997---------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             101186999999999999828886541066317
Q gi|254781065|r  281 SHFRLTIEEGQKIVASLKEKISGLCQPFYILDL  313 (352)
Q Consensus       281 ~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~  313 (352)
                        =..+.++..+.+......++......+....
T Consensus       156 --~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~  186 (240)
T 1sfs_A          156 --ADPTKGDFAAAYCEAVSRNNQVAVQAVIWSA  186 (240)
T ss_dssp             --ECTTSTTHHHHHHHHHHHCTHHHHHCEEEEC
T ss_pred             --CCCCHHHHHHHHHCCCCCHHHHHHHHCCEEC
T ss_conf             --1585056788752144351667654131011


No 13 
>>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} (A:)
Probab=83.91  E-value=1.4  Score=24.63  Aligned_cols=69  Identities=10%  Similarity=0.005  Sum_probs=53.2

Q ss_pred             HHCCHHHHHHHHHHHHCCC---EEEECHHHHHCCCC---CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             8869999999999998798---98232798623457---889999999999986982423011345765210118
Q gi|254781065|r  217 YEFSEEAIAAISRLANAGI---ILLSQSVLLKGIND---DPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL  285 (352)
Q Consensus       217 ~Elt~~~~~A~~~L~~~Gv---~v~nQsVLLkgVND---~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v  285 (352)
                      .++.|.+.+|+++++++|.   .+-||+-..+|..-   .......+.+.|...|+.-.-.+.+.+-.|..+|.+
T Consensus        23 ~~~~p~v~e~l~~l~~~G~~ivi~Tnq~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~k~~~~~~~~~~   97 (126)
T 1xpj_A           23 VLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYI   97 (126)
T ss_dssp             CCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCCSEEEECCCCCCTTCEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEE
T ss_conf             785799999999999789999999566532457866565787999999999982998269986899877799985


No 14 
>>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B (A:262-403)
Probab=81.14  E-value=1.5  Score=24.44  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE----------------ECCCCCCC-----CHHHHHHHHHHHHCCCCCEEEEEECCEEEE
Q ss_conf             999999999972997479997----------------26981324-----989999999998619981289874343563
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIF----------------TGGDPLIL-----SHKRLQKVLKTLRYIKHVQILRFHSRVPIV  187 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVil----------------SGGDPl~l-----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~  187 (352)
                      +.-....+|+++||.|..|.-                +||-.++.     +.+....+++.|.-+.+--.+ =+++..+.
T Consensus        11 ~nA~~lA~~L~~~p~V~~V~yP~l~~~~~~~l~~~~~~g~~g~lsf~~~~~~~~~~~f~~~l~l~~~~~S~-G~~~SL~~   89 (142)
T 3cog_A           11 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESL-GGFESLAE   89 (142)
T ss_dssp             HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC-SSSSCEEE
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEECCCC-CCCCCEEC
T ss_conf             99999999999689935797589888821999996189987067989769899999999738935554677-77562400


Q ss_pred             EHHH-----CCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHC
Q ss_conf             4343-----399999998625993899933699588699999999999987
Q gi|254781065|r  188 DPQR-----INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANA  233 (352)
Q Consensus       188 ~P~R-----it~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~  233 (352)
                      .|..     .+++-.+...-...-+-+.+-+.+|.+|-....+|+++++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~Gi~~~liRlSvGlE~~edLi~Dl~~Al~~~~~~  140 (142)
T 3cog_A           90 LPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHPP  140 (142)
T ss_dssp             CTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             765224322899999975989495999958599999999999999836678


No 15 
>>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:247-386)
Probab=78.77  E-value=3.1  Score=22.33  Aligned_cols=104  Identities=12%  Similarity=0.154  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEE----------------CCCCCCC-----CHHHHHHHHHHHHCCCCCEEEEEECCEEEE
Q ss_conf             9999999999729974799972----------------6981324-----989999999998619981289874343563
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFT----------------GGDPLIL-----SHKRLQKVLKTLRYIKHVQILRFHSRVPIV  187 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilS----------------GGDPl~l-----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~  187 (352)
                      +.-.+..+|+++||.|..|.--                ||-+++.     +......+++.|.-+.+--.+ =+.+..+.
T Consensus        11 ~nA~~la~~L~~~~~v~~V~yPgl~~~p~~~~~~k~~~ggg~~~~f~~~~~~~~~~~F~~~l~l~~~~~Sl-Gg~~SL~~   89 (140)
T 1cs1_A           11 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESL-GGVESLIS   89 (140)
T ss_dssp             HHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCC-CSSSCEEE
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHCCCCEECCCC-CCCCCEEE
T ss_conf             99999999643588666631012220258999876158986400300134699999999828826455156-87530330


Q ss_pred             EHHH-----CCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHC
Q ss_conf             4343-----399999998625993899933699588699999999999987
Q gi|254781065|r  188 DPQR-----INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANA  233 (352)
Q Consensus       188 ~P~R-----it~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~  233 (352)
                      .|..     ++++-...+.-...-+-+.+-..+|.+|-....+|++.+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~Gi~~~lvRlSvGlE~~edLi~Dl~~AL~~~~~~  140 (140)
T 1cs1_A           90 HAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG  140 (140)
T ss_dssp             EGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             661005311799999866989296999765299999999999999986179


No 16 
>>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} (A:60-137,A:231-275)
Probab=76.75  E-value=3.9  Score=21.56  Aligned_cols=34  Identities=18%  Similarity=0.483  Sum_probs=24.0

Q ss_pred             EEEE-ECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEE
Q ss_conf             9997-2698132498999999999861--99812-8987
Q gi|254781065|r  146 EVIF-TGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRF  180 (352)
Q Consensus       146 eVil-SGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi  180 (352)
                      +++| .||||. |+.+.|..++++|.+  |.+|+ .|-+
T Consensus        22 dLyIkGsGDPt-Ltse~L~~La~~Lk~~GIr~I~GdIvi   59 (123)
T 2ex2_A           22 DLVARFGADPT-LKRQDIRNMVATLKKSGVNQIDGNVLI   59 (123)
T ss_dssp             EEEEECCCCTT-CCHHHHHHHHHHHHHTTCCEEESCEEE
T ss_pred             CEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEECCEEEE
T ss_conf             18998268998-466689999999997188511340673


No 17 
>>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:29-54,A:294-398)
Probab=73.64  E-value=6.6  Score=19.99  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHCCCEEE-ECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCH---------HH
Q ss_conf             9999999999998798982-3279862345788999999999998698242301134576521011869---------99
Q gi|254781065|r  220 SEEAIAAISRLANAGIILL-SQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTI---------EE  289 (352)
Q Consensus       220 t~~~~~A~~~L~~~Gv~v~-nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~---------~~  289 (352)
                      ...+....+.|++.|+.+. .++++.--.-++.+....+++.|.+.|+.-.+..-+---.|.+++|+++         ++
T Consensus        34 ~~n~~~l~~~L~~~Gf~v~~s~s~iv~i~~~~~~~~~~l~~~L~e~Gi~V~~~~~P~vP~g~~~lRisita~~t~eeId~  113 (131)
T 3a2b_A           34 WKNTDYAKAQLLDHGFDLGATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDE  113 (131)
T ss_dssp             HHHHHHHHHHHHHTTCCBCSCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf             98888877543203888689999989999898899999999999789279888899889998069999887799999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999982
Q gi|254781065|r  290 GQKIVASLKEK  300 (352)
Q Consensus       290 ~~~i~~~l~~~  300 (352)
                      ..+.+.++...
T Consensus       114 lieal~ei~~~  124 (131)
T 3a2b_A          114 AIEKMVKVFKQ  124 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 18 
>>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} (A:66-145,A:240-288)
Probab=73.63  E-value=4.6  Score=21.09  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEEECC
Q ss_conf             9972698132498999999999861--99812-8987434
Q gi|254781065|r  147 VIFTGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRFHSR  183 (352)
Q Consensus       147 VilSGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi~TR  183 (352)
                      +|.-+||| +|+.+.|..++++|++  |.+|+ .|.+-..
T Consensus        24 ~IkGsGDP-tLtse~L~~La~~Lk~~GIr~I~G~IviD~S   62 (129)
T 1w79_A           24 YLVGRGDP-TLSAEDLDAMAAEVAASGVRTVRGDLYADDT   62 (129)
T ss_dssp             EEEECSCT-TCCHHHHHHHHHHHHHTTCCEECSCEEEECT
T ss_pred             EEEECCCC-CCCHHHHHHHHHHHHHHCCCEECCCEEECCC
T ss_conf             99955899-8788899999999997287555055797154


No 19 
>>2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* (A:1-211)
Probab=72.28  E-value=2.9  Score=22.44  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             899999999997299747999726981324
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLIL  157 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l  157 (352)
                      -+++.++++.++++++++-|||+||.+-..
T Consensus        41 ~~~l~~~l~~~~~d~~v~~vVl~g~~~~~f   70 (211)
T 2iex_A           41 VNEMIDAFTKARDDSNIGVIILTGAGGKAF   70 (211)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSSEE
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCHHH
T ss_conf             999999999997486665244226885011


No 20 
>>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272)
Probab=71.80  E-value=5.1  Score=20.76  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEEEC
Q ss_conf             9972698132498999999999861--99812-898743
Q gi|254781065|r  147 VIFTGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRFHS  182 (352)
Q Consensus       147 VilSGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi~T  182 (352)
                      +|.-|||| +|+.+.|..++..|.+  |..|+ .|-+-+
T Consensus        24 ~i~G~GDP-tLt~~~L~~la~~Lk~~GI~~I~G~iiiD~   61 (121)
T 3a3d_A           24 IVSFTGDP-DLTRGQLYSLLAELKKQGIKKINGDLVLDT   61 (121)
T ss_dssp             EEECCCCT-TCCHHHHHHHHHHHHHTTCCEECSCEEEEC
T ss_pred             EEEECCCC-CCCHHHHHHHHHHHHHHCCCEECCCEEECC
T ss_conf             99834799-889899999999999618752404323023


No 21 
>>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii OT3} PDB: 2z4p_A 2e1a_A (A:)
Probab=70.89  E-value=8.1  Score=19.34  Aligned_cols=54  Identities=11%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHH-HHHHCCCCCEEEEE
Q ss_conf             9899999999997299747999726981324------989999999-99861998128987
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVL-KTLRYIKHVQILRF  180 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll-~~L~~i~hv~~IRi  180 (352)
                      .....++..+.+++.|+|.++-...||.=.+      +.+.|..++ +.|..+|+|+.++-
T Consensus        11 ~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~T   71 (83)
T 2cvi_A           11 AAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTST   71 (83)
T ss_dssp             CTTCHHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEE
T ss_pred             CCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             7899999999997699988898970889999999989999999999998645999817999


No 22 
>>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} (A:134-332)
Probab=70.63  E-value=8.2  Score=19.30  Aligned_cols=107  Identities=13%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             HHHH-HHHHHHHHHCCCEEEEEEEC--------CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC-------------CEE
Q ss_conf             8999-99999997299747999726--------9813249899999999986199812898743-------------435
Q gi|254781065|r  128 SKDT-EAALAYIQEKSQIWEVIFTG--------GDPLILSHKRLQKVLKTLRYIKHVQILRFHS-------------RVP  185 (352)
Q Consensus       128 ~~~~-~~~~~Yi~~~~eI~eVilSG--------GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~T-------------R~p  185 (352)
                      .++. +...+.++...+--.+..+|        +++...+.+.|..+.+..++..  -.+.+|.             +..
T Consensus        41 ~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g--~~v~~H~~~~~~~~~~~~~g~~~  118 (199)
T 2r8c_A           41 VDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRG--TYVLAHAYTPAAIARAVRCGVRT  118 (199)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTT--CCEEEEECSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             7999999999875155111101245433334443102343334678999987520--21000000022321112202111


Q ss_pred             EEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---------------------CHHHHHHHHHHHHCCCEEEE
Q ss_conf             6343433999999986259938999336995886---------------------99999999999987989823
Q gi|254781065|r  186 IVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---------------------SEEAIAAISRLANAGIILLS  239 (352)
Q Consensus       186 v~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---------------------t~~~~~A~~~L~~~Gv~v~n  239 (352)
                      +..-..++++.++.|++.+.   .++|+-+.++.                     .......+++|.++|++|.-
T Consensus       119 i~H~~~~~~~~i~~l~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~aGv~v~~  190 (199)
T 2r8c_A          119 IEHGNLIDDETARLVAEHGA---YVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGF  190 (199)
T ss_dssp             EEECTTCCHHHHHHHHHTTC---EEECCTHHHHHHHHHTTTTTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECC
T ss_pred             CCCCCCCCCHHHHHHHHCCC---CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCCCEEEE
T ss_conf             12344321024555442165---3111101100011112212653112432101102443210001146742541


No 23 
>>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} (A:)
Probab=70.56  E-value=8.2  Score=19.29  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCCCC--HHH---H-----------HHHHHHHHCCCCCEEEEEECCE
Q ss_conf             78989999999999729974799972--69813249--899---9-----------9999998619981289874343
Q gi|254781065|r  125 VLSSKDTEAALAYIQEKSQIWEVIFT--GGDPLILS--HKR---L-----------QKVLKTLRYIKHVQILRFHSRV  184 (352)
Q Consensus       125 ~~~~~~~~~~~~Yi~~~~eI~eVilS--GGDPl~l~--~~~---L-----------~~ll~~L~~i~hv~~IRi~TR~  184 (352)
                      ..+..++++.++.|.+|+.|..+|+-  -|.|+--+  .+.   .           ...+..|..-+.+..+|+.||.
T Consensus         8 ~~~~~evee~l~Ri~~~kgV~g~iI~n~~G~pirst~d~~~a~~yA~~~~~l~~~a~~~vrdldp~nel~~LRiRTkk   85 (106)
T 2hz5_A            8 HGSMAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKK   85 (106)
T ss_dssp             -------CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESS
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             676999999999986399945999996999888772784879999999999999999999837987866999986287


No 24 
>>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} (A:)
Probab=70.40  E-value=5.6  Score=20.50  Aligned_cols=93  Identities=23%  Similarity=0.170  Sum_probs=59.9

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEE-------------
Q ss_conf             7999726981324989999999998619981289874343563434339999999862599389993-------------
Q gi|254781065|r  145 WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAI-------------  211 (352)
Q Consensus       145 ~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~-------------  211 (352)
                      +.|++||=+|+-.-...=.+.+-....=..+..++|+|+..=+.-+.+++.+.+.+++....+++.+             
T Consensus         2 k~IliTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~i~~~~lPV~y~~~~~~l~~~l~~~~p~~vih~Gv~~~~~~i~iE~   81 (220)
T 1a2z_A            2 KKVLITGFEPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVER   81 (220)
T ss_dssp             EEEEEEEECCCTTCSCCHHHHHHHHHTTCEETTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEEC
T ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
T ss_conf             97999834898989878599999970215799836999972154799999999999847861899986037877257998


Q ss_pred             ------CCCCHHHC-------------------CHHHHHHHHHHHHCCCEE
Q ss_conf             ------36995886-------------------999999999999879898
Q gi|254781065|r  212 ------HANHPYEF-------------------SEEAIAAISRLANAGIIL  237 (352)
Q Consensus       212 ------H~NHp~El-------------------t~~~~~A~~~L~~~Gv~v  237 (352)
                            .+.-|++.                   +-.+.+.+++|+++|+++
T Consensus        82 ~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~i~~~l~~~g~~~  132 (220)
T 1a2z_A           82 IAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAITKTLRDNGIPA  132 (220)
T ss_dssp             EEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECCSCHHHHHHHHHHTTCCE
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHCCCCE
T ss_conf             787579887456678978898827899612026999999999998559995


No 25 
>>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} (A:69-148,A:245-289)
Probab=68.99  E-value=6.3  Score=20.12  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEEEC
Q ss_conf             9972698132498999999999861--99812-898743
Q gi|254781065|r  147 VIFTGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRFHS  182 (352)
Q Consensus       147 VilSGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi~T  182 (352)
                      +|.-|||| +|+.+.|..++.+|.+  |..|+ .|.+-.
T Consensus        24 ~i~G~GDP-tL~~~~L~~la~~Lk~~GI~~I~G~iviD~   61 (125)
T 1w5d_A           24 YLKGKGDP-TLLPSDFDKMAEILKHSGVKVIKGNLIGDD   61 (125)
T ss_dssp             EEEECSCT-TCCHHHHHHHHHHHHHTTCCEESSCEEEEC
T ss_pred             EEEECCCC-CCCHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf             99946699-887556999999999708750025478516


No 26 
>>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} (A:)
Probab=68.93  E-value=8.9  Score=19.06  Aligned_cols=32  Identities=13%  Similarity=0.094  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH
Q ss_conf             89999999999729974799972698132498
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSH  159 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~  159 (352)
                      -+++.++++.++++++|+-|||+|+.+-..+.
T Consensus        34 ~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~g   65 (266)
T 3fdu_A           34 YLWIAKALDEADQNKDVRVVVLRGAEHDFTAG   65 (266)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCEEECC
T ss_conf             99999999999758994699997898425157


No 27 
>>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} (A:)
Probab=68.11  E-value=9.2  Score=18.95  Aligned_cols=84  Identities=6%  Similarity=0.006  Sum_probs=58.2

Q ss_pred             EEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             56343433999999986259938999336995886999999999999879898232798623457889999999999986
Q gi|254781065|r  185 PIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVEL  264 (352)
Q Consensus       185 pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~  264 (352)
                      |...+..+-+.+++++.+..+.+++++-.=    ..++..+++....+.|+.|.   +++.+.+.....-......|...
T Consensus         8 ~~~~~~~~~~~~~~~i~~A~~~I~i~~~~~----~~~~i~~~L~~a~~rGv~V~---ii~~~~~~~~~~~~~~~~~l~~~   80 (155)
T 1byr_A            8 GYSPEGSARVLVLSAIDSAKTSIRMMAYSF----TAPDIMKALVAAKKRGVDVK---IVIDERGNTGRASIAAMNYIANS   80 (155)
T ss_dssp             EEETTTHHHHHHHHHHHHCSSEEEEEESSB----CCHHHHHHHHHHHHTTCEEE---EEEESTTCCSHHHHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEEEEEEEE----CCHHHHHHHHHHHHCCCEEE---EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             989986099999999984882999999640----49899999999986498599---99985034550047888887750


Q ss_pred             CCEEEEEECCC
Q ss_conf             98242301134
Q gi|254781065|r  265 RIKPYYLHHPD  275 (352)
Q Consensus       265 gV~PYYl~~~d  275 (352)
                      |+..++.....
T Consensus        81 ~v~~~~~~~~~   91 (155)
T 1byr_A           81 GIPLRTDSNFP   91 (155)
T ss_dssp             TCCEEEECSSS
T ss_pred             CCCCCCCCCCC
T ss_conf             23323457775


No 28 
>>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} (A:261-398)
Probab=67.93  E-value=9.3  Score=18.92  Aligned_cols=101  Identities=10%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC----------------CCCCCCC----H-HHHHHHHHHHHCCCCCEEEEEECCEEEE
Q ss_conf             99999999997299747999726----------------9813249----8-9999999998619981289874343563
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTG----------------GDPLILS----H-KRLQKVLKTLRYIKHVQILRFHSRVPIV  187 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSG----------------GDPl~l~----~-~~L~~ll~~L~~i~hv~~IRi~TR~pv~  187 (352)
                      +.-.+..+|+++||.|..|.-.|                |-.++..    + .....+++.|.-..+--.+ =|++..+.
T Consensus        11 ~nA~~ia~~L~~~p~V~~V~yPgl~~~p~~~~~~k~~~~g~g~~sf~~~~~~~~~~~f~~~L~l~~~~~Sl-Gg~~SLi~   89 (138)
T 1gc0_A           11 ANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSL-GDAESLAQ   89 (138)
T ss_dssp             HHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCC-SCSSCEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEECCCC-CCCCCEEE
T ss_conf             88999999997476644335522367815779863279999878986539999999999838946664567-87672201


Q ss_pred             EHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH
Q ss_conf             43433-----99999998625993899933699588699999999999
Q gi|254781065|r  188 DPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL  230 (352)
Q Consensus       188 ~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L  230 (352)
                      .|...     +++-.+...-...-+-+.+-+.+|.+|-.+..+|+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~gi~~~liRlsvGlEd~edLi~Dl~~Al~~~  137 (138)
T 1gc0_A           90 HPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  137 (138)
T ss_dssp             CGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCHHCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             752105201899999866979495999970199999999999999963


No 29 
>>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} (A:259-404)
Probab=67.20  E-value=9.6  Score=18.82  Aligned_cols=102  Identities=11%  Similarity=0.180  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC----------------CCCCCCCH-----HHHHHHHHHHHCCCCCEEEEEEC-----
Q ss_conf             99999999997299747999726----------------98132498-----99999999986199812898743-----
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTG----------------GDPLILSH-----KRLQKVLKTLRYIKHVQILRFHS-----  182 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSG----------------GDPl~l~~-----~~L~~ll~~L~~i~hv~~IRi~T-----  182 (352)
                      +.-.+..+|+++||.|..|.-.|                |-+++...     +....+++      +.+.+.+++     
T Consensus        11 ~nA~~la~~L~~~p~v~~V~yP~l~~~p~~~l~~~~~~~gg~~l~~~~~~~~~~~~~f~~------~l~lf~~~~slGg~   84 (146)
T 1e5e_A           11 ENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLD------NLKLITLAVSLGGC   84 (146)
T ss_dssp             HHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHH------TCSSSEESSCCCSS
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH------CCCCCEEEECCCCC
T ss_conf             999999999984999316746888888319999975668986138887686999999997------28855485567777


Q ss_pred             CEEEEEHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE
Q ss_conf             4356343433-----99999998625993899933699588699999999999987989
Q gi|254781065|r  183 RVPIVDPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGII  236 (352)
Q Consensus       183 R~pv~~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~  236 (352)
                      +..+..|..-     +++-.+.+.-...-|-+.+-+.++.+|-....+|+.++.+.+.+
T Consensus        85 ~SLi~~~~~~~~~~~~~~~~~~~Gi~~~lvRlsvGlEd~edLi~Dl~~Al~~~~~~~~~  143 (146)
T 1e5e_A           85 ESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLRSHHH  143 (146)
T ss_dssp             SCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHCC---
T ss_pred             CEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             50444862005533899999976989394999925699999999999999999864022


No 30 
>>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:96-238)
Probab=66.05  E-value=7.3  Score=19.67  Aligned_cols=66  Identities=12%  Similarity=0.199  Sum_probs=43.3

Q ss_pred             EECCCCCCHHHCCCCCCEECCCCCCCCCHHHHH---------HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             972743000001122330125555678989999---------99999972997479997269813249899999999986
Q gi|254781065|r  100 KLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTE---------AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLR  170 (352)
Q Consensus       100 ~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~---------~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~  170 (352)
                      ..+..|..++...+.....     ...+.+++.         ...+.++..+.+++|++|||   ...|..|.+.+.+..
T Consensus        66 ~~~~~~~~f~~~~~~~~~~-----~~~~~~dia~~~~~~~a~~i~~~~~~~~~~~~vvl~GG---v~~N~~L~~~l~~~l  137 (143)
T 1hux_A           66 AISSTCTVFAESEVISQLS-----KGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGG---VAQNYGVRGALEEGL  137 (143)
T ss_dssp             CCCCCSHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEESG---GGGCHHHHHHHHHHH
T ss_pred             EECCCEEEEECHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CHHHHHHHHHHHHCC
T ss_conf             5503125552078898875-----69968999999999999999998764177652798566---000155788887346


Q ss_pred             CCC
Q ss_conf             199
Q gi|254781065|r  171 YIK  173 (352)
Q Consensus       171 ~i~  173 (352)
                      +.+
T Consensus       138 ~~~  140 (143)
T 1hux_A          138 GVE  140 (143)
T ss_dssp             CSC
T ss_pred             CCE
T ss_conf             706


No 31 
>>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.25A {Homo sapiens} (A:1-248,A:409-463)
Probab=64.70  E-value=4.8  Score=20.94  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=52.2

Q ss_pred             CEEEEEECCCCCCHHHC---CCCCCEE--CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             53799972743000001---1223301--255556789899999999997299747999726981324989999999998
Q gi|254781065|r   95 DRILLKLLHVCPVYCRF---CFRREMV--GSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTL  169 (352)
Q Consensus        95 ~rvLl~~t~~C~~~Cry---CfR~~~~--~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L  169 (352)
                      +.|+|++...+..-+..   +|+....  +-.+... ...+-+.+-+++..|+.|+-|+++||..       +-..+.+-
T Consensus       167 NavILKp~~~a~~s~~~l~~l~~~Al~~~g~~~~~v-~~~~~~~v~~ll~~~~~id~V~ftGs~~-------~g~~V~~~  238 (303)
T 2h5g_A          167 NGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQ-LVNTREEVEDLCRLDKXIDLIIPRGSSQ-------LVRDIQKA  238 (303)
T ss_dssp             CEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEE-ECCTTCCC-------CCCSEEEEESCHH-------HHHHHHHH
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHHHCCCCCCEEEECCCCH-------HHHHHHHH
T ss_conf             852532717788899999999975445408844788-6230258999971658875899805750-------78899984


Q ss_pred             H-C---CCC-CEEEEEECCEEEEEHHHCC
Q ss_conf             6-1---998-1289874343563434339
Q gi|254781065|r  170 R-Y---IKH-VQILRFHSRVPIVDPQRIN  193 (352)
Q Consensus       170 ~-~---i~h-v~~IRi~TR~pv~~P~Rit  193 (352)
                      . .   |.| |.+=++|.|.|+-+.+-.|
T Consensus       239 At~iPV~~~gist~k~hargp~g~~~l~~  267 (303)
T 2h5g_A          239 AKGIPVXGHSISTSRIHARGPVGLEGLLT  267 (303)
T ss_dssp             CSSSCBCSCSEECCSSSCCEECCGGGGEE
T ss_pred             CCCCCEEEECEECCCCCCCCCCCHHHHCE
T ss_conf             45874799457548777899777799478


No 32 
>>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:113-234)
Probab=64.38  E-value=5.2  Score=20.68  Aligned_cols=98  Identities=15%  Similarity=0.108  Sum_probs=66.8

Q ss_pred             HHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCC-CCCHHHHHHHHHHHHHCCCEE
Q ss_conf             4339999999862599389993369958869999999999998798982327986234-578899999999999869824
Q gi|254781065|r  190 QRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGI-NDDPEILANLMRTFVELRIKP  268 (352)
Q Consensus       190 ~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgV-ND~~~~l~~L~~~L~~~gV~P  268 (352)
                      |-++++.++.+.+..              -..++.+|++.++++|..+.-.+=++-|- +++.+.+.+..+.+.+++..=
T Consensus        10 eS~~~~vl~~~~r~~--------------~~~~~~~~~~~l~~~g~~~~i~~~~i~GlPget~e~~~~t~~~l~~l~~d~   75 (122)
T 2qgq_A           10 QHGSDKILKLXGRTK--------------SSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDK   75 (122)
T ss_dssp             BCSCHHHHHHTTCCS--------------CHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSE
T ss_pred             CCCCHHHHHHHHCCC--------------CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCH
T ss_conf             446677777764376--------------344323577678774899638877876179887378999899987649881


Q ss_pred             EEEECCCCCCCCCCCCC----CHHHHHHHHHHHHHHC
Q ss_conf             23011345765210118----6999999999999828
Q gi|254781065|r  269 YYLHHPDLAAGTSHFRL----TIEEGQKIVASLKEKI  301 (352)
Q Consensus       269 YYl~~~d~v~G~~hf~v----~~~~~~~i~~~l~~~l  301 (352)
                      =++|.+.+.+|+.-++-    +.....+.++.+...+
T Consensus        76 i~~~~~~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~  112 (122)
T 2qgq_A           76 LGAFVYSDEEGTVAFNLKEKVDPEXAKRRQEELLLLQ  112 (122)
T ss_dssp             EEEEECCC-----------CCCHHHHHHHHHHHHHHH
T ss_pred             HHCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             0021023222201200001245023466777767765


No 33 
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:54-162)
Probab=63.84  E-value=11  Score=18.39  Aligned_cols=56  Identities=13%  Similarity=0.011  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             9899999999997299747999726981-324-----9899999999986199812898743
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLKTLRYIKHVQILRFHS  182 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~~L~~i~hv~~IRi~T  182 (352)
                      ....+++..+.|++.|+|.++-..-||. +++     +.+.|..++.++.+++.|..++=+.
T Consensus        22 ~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~l~v~~~d~~~l~~~i~~~~~~~gv~~~~T~i   83 (109)
T 3i4p_A           22 SIEWLKRFSEVVSEFPEVVEFYRXSGDVDYLLRVVVPDIAAYDAFYKRXIAKIEIRDVSSAF   83 (109)
T ss_dssp             CHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             46779999999856984899999628999899999899999999999973679944899999


No 34 
>>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=63.44  E-value=6.2  Score=20.17  Aligned_cols=43  Identities=23%  Similarity=0.108  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             999999999998798982327------------9862345788999999999998
Q gi|254781065|r  221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE  263 (352)
Q Consensus       221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~  263 (352)
                      -|+.+||.=|+.+|.+-+.|.            |=-..=.=+.+.+..|+++|-.
T Consensus        21 iEA~eAC~WLraaGFpqYAqlyEd~~FPidi~~VkkDh~fLd~D~l~sL~RRL~t   75 (91)
T 2dky_A           21 IEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNT   75 (91)
T ss_dssp             HHHHHHHHHHHHHTCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9899999999983884899986503687303776137653057789999999999


No 35 
>>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:126-286)
Probab=61.82  E-value=8.3  Score=19.26  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf             9999999972997479997269813249899999999986199812
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQ  176 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~  176 (352)
                      +.+.+.++.+...++.|++|||   +..|..|.+-|.+......++
T Consensus       111 l~~~~~~~~~~~~~~~lvlsGG---Va~N~~l~~~l~~~l~~~~~~  153 (161)
T 3en9_A          111 LTEITERALAHTNKGEVMLVGG---VAANNRLREMLKAMCEGQNVD  153 (161)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESG---GGGCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEE---HHHHHHHHHHHHHHHHHCCCE
T ss_conf             9999999999719398999833---998899999999999876999


No 36 
>>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* (A:260-398)
Probab=61.40  E-value=12  Score=18.10  Aligned_cols=96  Identities=13%  Similarity=0.167  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEE----------------CCCCCCCCH-----HHHHHHHHHHHCCCCCEEEEEEC-----
Q ss_conf             9999999999729974799972----------------698132498-----99999999986199812898743-----
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFT----------------GGDPLILSH-----KRLQKVLKTLRYIKHVQILRFHS-----  182 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilS----------------GGDPl~l~~-----~~L~~ll~~L~~i~hv~~IRi~T-----  182 (352)
                      +.-.+..+|+++||+|..|.-.                ||=.++...     +....+      ++..+.+++++     
T Consensus        11 ~nA~~la~~L~~~p~V~~V~yP~l~~~~~~~~~~~~~~ggg~~lsf~l~~~~~~~~~f------~~~l~lf~~~~s~G~~   84 (139)
T 2rfv_A           11 ENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRM------INSVELCLLAVSLGDT   84 (139)
T ss_dssp             HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH------HTTCSSSEECSCCSSS
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHH------HHCCCCCCEEECCCCC
T ss_conf             9999999999748996757178878996512223446778759999966999999999------9728936241571643


Q ss_pred             CEEEEEHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH
Q ss_conf             4356343433-----99999998625993899933699588699999999999
Q gi|254781065|r  183 RVPIVDPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL  230 (352)
Q Consensus       183 R~pv~~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L  230 (352)
                      +..+..|...     +++-.+...-...-+-+.+-+.++.+|-....+|+.+.
T Consensus        85 ~SLi~~~~~~~~~~~~~~~~~~~Gi~~~liRisvGlEd~~dLi~Dl~~Al~~~  137 (139)
T 2rfv_A           85 ETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  137 (139)
T ss_dssp             SCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             30323763126545899999965989396999761099999999999999872


No 37 
>>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:58-151)
Probab=60.58  E-value=13  Score=18.00  Aligned_cols=55  Identities=18%  Similarity=0.104  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             8999999999972997479997269813------249899999999986199812898743
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPL------ILSHKRLQKVLKTLRYIKHVQILRFHS  182 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl------~l~~~~L~~ll~~L~~i~hv~~IRi~T  182 (352)
                      ....++..+.|++.|+|.++-...|+-=      .-+.+.+..++++|..++.|..++-+-
T Consensus        20 ~~~~~~v~~~l~~~p~V~~~~~~sG~~d~~~~v~~~d~~~l~~~i~~l~~~~gv~~~~t~i   80 (94)
T 2cyy_A           20 AGKYSEVASNLAKYPEIVEVYETTGDYDXVVKIRTKNSEELNNFLDLIGSIPGVEGTHTXI   80 (94)
T ss_dssp             TTCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred             CCCCHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             5320033444047863167101578876999999799999999999984689940899999


No 38 
>>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259)
Probab=59.99  E-value=8.3  Score=19.26  Aligned_cols=53  Identities=15%  Similarity=0.092  Sum_probs=38.9

Q ss_pred             CCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             69958869999999999998798982327986234578899999999999869824230
Q gi|254781065|r  213 ANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYL  271 (352)
Q Consensus       213 ~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl  271 (352)
                      +.+-.++-|.+.+++++|+++|+++.-=|      |.+......+.++|-.+|+.+|.-
T Consensus        18 l~~~~~~~pg~~e~L~~L~~~G~~~~iiT------N~~~~~~~~~~~~L~~~Gl~~~f~   70 (140)
T 2ho4_A           18 LHIEDAAVPGAQEALKRLRATSVXVRFVT------NTTKETKKDLLERLKKLEFEISED   70 (140)
T ss_dssp             SCC---CCTTHHHHHHHHHTSSCEEEEEE------CCSSCCHHHHHHHHHHTTCCCCGG
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf             28199068009999999998699889994------899899999999986304677700


No 39 
>>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* (A:1-133)
Probab=58.51  E-value=14  Score=17.76  Aligned_cols=41  Identities=12%  Similarity=0.162  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             899999999997299747999726981324989999999998619
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      .+.++++++..++...|  |+++.|||++.+.  -.++++.+++-
T Consensus        83 ~~~~~~i~~~~~~G~~V--~~l~~GDP~i~~~--~~~l~~~~~~~  123 (133)
T 2e0n_A           83 AANYASMAEEVQAGRRV--AVVSVGDGGFYST--ASAIIERARRD  123 (133)
T ss_dssp             GGGHHHHHHHHHTTCEE--EEEESBCTTBSCT--HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCE--EEECCCCCCCCCC--HHEECCCCCCC
T ss_conf             76556789986089714--7863544321142--10110112344


No 40 
>>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A (A:)
Probab=58.50  E-value=11  Score=18.45  Aligned_cols=92  Identities=21%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             EEEEECCCCCCCCHHHHH-HHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEEC------------
Q ss_conf             999726981324989999-9999986199812898743435634343399999998625993899933------------
Q gi|254781065|r  146 EVIFTGGDPLILSHKRLQ-KVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIH------------  212 (352)
Q Consensus       146 eVilSGGDPl~l~~~~L~-~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H------------  212 (352)
                      .|++||=+|+---...=. .+++.|.+. .+..++|.|...=+.-..+.+.+.+.+++....+++.+-            
T Consensus         2 ~IliTGF~PF~~~~~NpS~~~~~~L~~~-~~~~~~i~~~~lpV~y~~~~~~i~~~~~~~~p~~vih~Gv~~~~~~i~lE~   80 (208)
T 1x10_A            2 KVLVTGFEPFGGEKINPTERIAKDLDGI-KIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIER   80 (208)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHHHHTTC-EETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSEEEEC
T ss_pred             EEEEEEECCCCCCCCCHHHHHHHHCCCC-CCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE
T ss_conf             8999800798989878689999856457-888717999870022899999999999857897699996038876078886


Q ss_pred             -------CCCHHHC-------------------CHHHHHHHHHHHHCCCEEE
Q ss_conf             -------6995886-------------------9999999999998798982
Q gi|254781065|r  213 -------ANHPYEF-------------------SEEAIAAISRLANAGIILL  238 (352)
Q Consensus       213 -------~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~  238 (352)
                             ++-|++.                   +-.+.+.+++|+++|+++.
T Consensus        81 ~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~l~~~l~~~g~~~~  132 (208)
T 1x10_A           81 IAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKIMKKLHERGIPAY  132 (208)
T ss_dssp             EEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHTTCCEE
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEE
T ss_conf             3771799750367787469986557895241069999999998886299816


No 41 
>>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrinogen-III methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} (A:1-130)
Probab=56.62  E-value=15  Score=17.55  Aligned_cols=41  Identities=15%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             899999999997299747999726981324989999999998619
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      .+..+.+++++++...|  ++++.|||++.+.  ..++++++.+-
T Consensus        79 ~~~~~~i~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~~  119 (130)
T 1s4d_A           79 RDISLRLVELARAGNRV--LRLKGGDPFVFGR--GGEEALTLVEH  119 (130)
T ss_dssp             HHHHHHHHHHHHTTCCE--EEEESBCTTSSSS--HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCE--EEEECCCCCCHHH--HHHHHHHHHHC
T ss_conf             67889999999779918--9994789840466--89999999852


No 42 
>>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} (A:)
Probab=55.84  E-value=7.3  Score=19.66  Aligned_cols=27  Identities=11%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      ..++.++++.++++++++-||++|+.+
T Consensus        35 ~~~l~~~l~~~~~d~~~~~vvi~g~~~   61 (363)
T 3bpt_A           35 IRQIYPQLKKWEQDPETFLIIIKGAGG   61 (363)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEETTS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999998499966999965899


No 43 
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:122-263)
Probab=55.64  E-value=15  Score=17.44  Aligned_cols=129  Identities=16%  Similarity=0.148  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHH--CCCE----EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE--EEEECCEEEEEHHHCCHHHHHHHH
Q ss_conf             99999999972--9974----799972698132498999999999861998128--987434356343433999999986
Q gi|254781065|r  130 DTEAALAYIQE--KSQI----WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI--LRFHSRVPIVDPQRINPELIQCLK  201 (352)
Q Consensus       130 ~~~~~~~Yi~~--~~eI----~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~--IRi~TR~pv~~P~Rit~~L~~~l~  201 (352)
                      .-..+.+|+.+  |..+    +=.+++|..-...+..++.-+.+.+++-+....  +..+.    ..++..-.....+|.
T Consensus         5 ~~~~a~~~L~~~G~r~~~~~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~   80 (142)
T 3h75_A            5 GYRXLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGE----WNRERAYRQAQQLLK   80 (142)
T ss_dssp             HHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHC----CCHHHHHHHHHHHHH
T ss_conf             9999999998635553388647999957867727777666553344307875411000111----114799999999997


Q ss_pred             HCCCCEEEEECCCCHHHCC-HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             2599389993369958869-99999999999879898232798623457889999999999986982423
Q gi|254781065|r  202 EAGKPVYIAIHANHPYEFS-EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY  270 (352)
Q Consensus       202 ~~~~~~~iv~H~NHp~Elt-~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY  270 (352)
                      +...+-.|.+       .+ ..+..+++.+++.|+.+-.+-.+ -|.+|++.++..+..--+..=..|+|
T Consensus        81 ~~~~~~ai~~-------~~d~~a~g~~~~l~~~g~~vp~dv~v-vgfD~~~~~~~~~~~p~lt~i~q~~y  142 (142)
T 3h75_A           81 RYPKTQLVWS-------ANDEXALGAXQAARELGRKPGTDLLF-SGVNSSPEALQALIDGKLSVLEAGHF  142 (142)
T ss_dssp             HCTTEEEEEE-------SSHHHHHHHHHHHHHTTCCBTTTBEE-EEESCCHHHHHHHHHTSSCEEEECGG
T ss_pred             HCCCCCEEEE-------CCHHHHHHHHHHHHHCCCCCCCCEEE-EEECCCHHHHHHHHCCCEEEEECCHH
T ss_conf             4999739998-------87799999999999759999998599-99898599999875798059977908


No 44 
>>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural genomics, JCSG, protein structure initiative, PSI; 2.29A {Saccharomyces cerevisiae} (A:1-238,A:414-468)
Probab=55.14  E-value=5.3  Score=20.66  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC---CCC-CEEEEEECCEEEEEHHHCC
Q ss_conf             9999999729974799972698132498999999999861---998-1289874343563434339
Q gi|254781065|r  132 EAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY---IKH-VQILRFHSRVPIVDPQRIN  193 (352)
Q Consensus       132 ~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~---i~h-v~~IRi~TR~pv~~P~Rit  193 (352)
                      ++..+.+..|+.|+=|+++||..       +-+.+.+-.+   |.| |.+=++|-|.|+.+.+-.|
T Consensus       199 ~~v~~~l~~~~~id~IiftGs~~-------~~~~V~~~A~vPvi~~gist~k~hargp~g~~~l~~  257 (293)
T 1vlu_A          199 QDVSDLLDQDEYIDLVVPRGSNA-------LVRKIKDTTKIPVLGHAISTSKIHARGPVGLDGLVS  257 (293)
T ss_dssp             --CGGGGGCTTTCCEEEEESCHH-------HHHHHHHTCCSCBTTBC-----------CCSGGGEE
T ss_pred             HHHHHHHHCCCCCCEEEECCCCC-------CEEEEECCCCCCEEEECEECCCCCCCCCCCHHHHCE
T ss_conf             77888874068775689556640-------202200024530787667558778899867688555


No 45 
>>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} (A:1-249)
Probab=55.07  E-value=8.3  Score=19.25  Aligned_cols=29  Identities=14%  Similarity=0.276  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             89999999999729974799972698132
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI  156 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~  156 (352)
                      .+++.++++.++.+++++=||+||.++-.
T Consensus        33 ~~~l~~al~~~~~d~~v~~vi~tg~g~~f   61 (249)
T 1dci_A           33 WRELVECFQKISKDSDCRAVVVSGAGKMF   61 (249)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEESTTCS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             99999999999739996699996346653


No 46 
>>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} (A:1-209)
Probab=54.49  E-value=16  Score=17.32  Aligned_cols=26  Identities=12%  Similarity=0.156  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999999729974799972698
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      -.++.++++.++++++++=||+|||.
T Consensus        35 ~~~l~~~l~~~~~d~~v~~vv~~~~~   60 (209)
T 3l3s_A           35 IAALHDALRRAXGDDHVHVLVIHGPG   60 (209)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             99999999999648996699997899


No 47 
>>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} (A:1-221)
Probab=53.55  E-value=13  Score=17.82  Aligned_cols=106  Identities=9%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH---------------------HHHHHHHHHHHCCCCCEE---------
Q ss_conf             89999999999729974799972698132498---------------------999999999861998128---------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSH---------------------KRLQKVLKTLRYIKHVQI---------  177 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~---------------------~~L~~ll~~L~~i~hv~~---------  177 (352)
                      ..++.++++.++++++|+=||+||+++---+.                     ..+..++..+...|-.-+         
T Consensus        33 ~~~l~~~~~~~~~d~~v~~vi~~g~~~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~G  112 (221)
T 3i47_A           33 LTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFG  112 (221)
T ss_dssp             HHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEECC
T ss_conf             99999999999748991699991567765567304443012223211101367899999999982898789998998767


Q ss_pred             ----------EEEECCEEEEE-HH----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHH
Q ss_conf             ----------98743435634-34----------------3399999998625993--------8999336995886999
Q gi|254781065|r  178 ----------LRFHSRVPIVD-PQ----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEE  222 (352)
Q Consensus       178 ----------IRi~TR~pv~~-P~----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~  222 (352)
                                +||.++--.+. |+                ++-......+--.+++        .-++.++--+.|+.++
T Consensus       113 gG~~lal~~D~~ia~~~a~f~~~~~~~g~~~~~~~~~l~~~~g~~~a~~~ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~  192 (221)
T 3i47_A          113 GGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEF  192 (221)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHH
T ss_pred             CCHHHHHCCCCCCCCCCCEEECCCEEEEECCCCCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECHHHHHHH
T ss_conf             62255505230246899799774023564576321332230258999999863897889999877991086084799999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999987
Q gi|254781065|r  223 AIAAISRLANA  233 (352)
Q Consensus       223 ~~~A~~~L~~~  233 (352)
                      +.+-.++|.+.
T Consensus       193 a~~~a~~l~~~  203 (221)
T 3i47_A          193 TLKYASQISNN  203 (221)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHCC
T ss_conf             99999999778


No 48 
>>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} (A:)
Probab=53.40  E-value=6.4  Score=20.08  Aligned_cols=43  Identities=23%  Similarity=0.113  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             999999999998798982327------------9862345788999999999998
Q gi|254781065|r  221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE  263 (352)
Q Consensus       221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~  263 (352)
                      -|+.+||.=|+.+|.+-+.|.            |=-..--=|.+.+..|+++|-.
T Consensus        19 iEA~eAC~WLraaGFpqYAqlyEd~~FPidi~~Vkkdh~fLd~Dsl~sL~RRL~t   73 (81)
T 2h80_A           19 IEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNT   73 (81)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9899999999983884899986603787303877237663167789999999999


No 49 
>>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis} (A:)
Probab=52.94  E-value=13  Score=17.78  Aligned_cols=153  Identities=18%  Similarity=0.114  Sum_probs=79.1

Q ss_pred             EEEEEECCCCCCCCHHHHHH-HHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEE---------------
Q ss_conf             79997269813249899999-99998619981289874343563434339999999862599389---------------
Q gi|254781065|r  145 WEVIFTGGDPLILSHKRLQK-VLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVY---------------  208 (352)
Q Consensus       145 ~eVilSGGDPl~l~~~~L~~-ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~---------------  208 (352)
                      +.|++||=+|+---...=.+ +++.|.. ..+..++|+++..=+.=..+.+.+-+.+.+....++               
T Consensus         2 k~iliTGF~pF~~~~~NpS~~i~~~L~~-~~~~~~~i~~~~lpV~y~~~~~~l~~~~~~~~pd~vih~Gv~~~~~~i~lE   80 (215)
T 3lac_A            2 KTVLLTGFDPFGGESINPAWEVAKSLHE-KTIGEYKIISKQVPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPDITIE   80 (215)
T ss_dssp             EEEEEEEECCCTTCSCCHHHHHHHTTTT-CEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE
T ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEEEECCEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEE
T ss_conf             9799952589898986849999986223-358982499985643389899999999983799689998635897607789


Q ss_pred             ---EE-ECCCCHHHC-------------------CHHHHHHHHHHHHCCCEEE-ECHHHHHCCCCCHHHHHHHHHHHHH-
Q ss_conf             ---99-336995886-------------------9999999999998798982-3279862345788999999999998-
Q gi|254781065|r  209 ---IA-IHANHPYEF-------------------SEEAIAAISRLANAGIILL-SQSVLLKGINDDPEILANLMRTFVE-  263 (352)
Q Consensus       209 ---iv-~H~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~-nQsVLLkgVND~~~~l~~L~~~L~~-  263 (352)
                         ++ ..+.-|++.                   +-...+.++++++.|+++. +...   |=-=+-.++-...+.+.. 
T Consensus        81 ~~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~T~lp~~~i~~~l~~~g~~~~iS~dA---G~yLCN~i~Y~sl~~~~~~  157 (215)
T 3lac_A           81 RVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPXKAIVKKLQEEGIPASVSQTA---GTFVXNHLFYGLXHELEKH  157 (215)
T ss_dssp             CEEESCBCCSSCCTTSCCCSSBCSSTTSCSEEECCSCHHHHHHHHHHTTCCEEEESCC---CSSHHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCHHHHHHHHHHCCCCEEEECCC---CHHHHHHHHHHHHHHHHHH
T ss_conf             7231577787799888876995275898634665899999999988539974882785---1106559999999999984


Q ss_pred             -CCCEEEEEECCCCC----CCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             -69824230113457----652101186999999999999828
Q gi|254781065|r  264 -LRIKPYYLHHPDLA----AGTSHFRLTIEEGQKIVASLKEKI  301 (352)
Q Consensus       264 -~gV~PYYl~~~d~v----~G~~hf~v~~~~~~~i~~~l~~~l  301 (352)
                       ..+.--.+|.+..-    .....+..+++...+.++.+-+.+
T Consensus       158 ~~~~~~~FiHVP~~~~~~~~~~~~~~~~l~~~~~av~~~i~~~  200 (215)
T 3lac_A          158 DTKXKGGFIHIPFLPEQASNYPGQPSXSLSTIRKGIELAVEVT  200 (215)
T ss_dssp             TTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             8998589997489725530579989878999999999999999


No 50 
>>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} (A:1-207)
Probab=52.13  E-value=16  Score=17.26  Aligned_cols=46  Identities=15%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCC------------H-------HHHHHHHHHHHCCCC
Q ss_conf             999999999972997479997269813249------------8-------999999999861998
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILS------------H-------KRLQKVLKTLRYIKH  174 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~------------~-------~~L~~ll~~L~~i~h  174 (352)
                      +++.++++.++++++|+-||++|+.|-..+            +       ..+..++..|...|-
T Consensus        39 ~~l~~~l~~~~~d~~v~~vii~g~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (207)
T 3kqf_A           39 EELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGXNEEQVRHAVSXIRTTXEXVEQLPQ  103 (207)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             99999999997499967899963878746435301233102112222233223230110104665


No 51 
>>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} (A:1-125)
Probab=51.96  E-value=17  Score=17.04  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             98999999999972997479997269813249899999999986199
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK  173 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~  173 (352)
                      ..+.+++.+.-+++...+= ++++||||+.-+.  ..+++..+.+..
T Consensus        74 ~~~~~~~~i~~~~~g~~vv-~~~~gg~P~~y~~--~~~l~~~~~~~g  117 (125)
T 3kwp_A           74 TQERIPQLIAKLKQGXQIA-QVSDAGXPSISDP--GHELVNACIDAH  117 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEE-EECSSBCTTSSHH--HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCH--HHHHHHHHHCCC
T ss_conf             1657999999998599789-9976888510366--999999851875


No 52 
>>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:1-104,A:174-218)
Probab=51.16  E-value=7.2  Score=19.68  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             HCCCCCHHHHHHHHHHHHHCC-------CEEEEEE
Q ss_conf             234578899999999999869-------8242301
Q gi|254781065|r  245 KGINDDPEILANLMRTFVELR-------IKPYYLH  272 (352)
Q Consensus       245 kgVND~~~~l~~L~~~L~~~g-------V~PYYl~  272 (352)
                      -|||-+++.|.+-..++|+.|       +.||||-
T Consensus       101 igVs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (149)
T 2a6a_A          101 APLNISPAVLVEESERLFREKKTIHYYEIEPLYLQ  135 (149)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTCCBCGGGTTHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCC
T ss_conf             14674999999999999985999980408477189


No 53 
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:57-150)
Probab=50.73  E-value=12  Score=18.01  Aligned_cols=49  Identities=18%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHHHHHHCCCCCEE
Q ss_conf             9999999999729974799972698-1324-----98999999999861998128
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVLKTLRYIKHVQI  177 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll~~L~~i~hv~~  177 (352)
                      ..+++..+-|++.|+|.++-...|+ -+++     +.+.|..++++|..+++|++
T Consensus        23 ~~~~~~~~~l~~~peV~~~~~vtG~~d~i~~v~~~~~~~l~~~~~~l~~~~~v~~   77 (94)
T 2w25_A           23 SQPDDAPARLEHIEEVESCYSVAGEASYVLLVRVASARALEDLLQRIRTTANVRT   77 (94)
T ss_dssp             TSCCCHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHHHHHHTEEE
T ss_pred             CHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEE
T ss_conf             1067899997507778465541899789999998999999999998716898679


No 54 
>>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} (A:1-184)
Probab=50.27  E-value=4.5  Score=21.16  Aligned_cols=90  Identities=7%  Similarity=0.035  Sum_probs=56.2

Q ss_pred             EEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHH
Q ss_conf             87434356343433999999986259938999336995886999999999999879898232798623457889999999
Q gi|254781065|r  179 RFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLM  258 (352)
Q Consensus       179 Ri~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~  258 (352)
                      .+.+..|...+..+.+.+++.++...+.+++.+-+=-+. .+.+..+|+....+.||.|.   +++.+.++....-...+
T Consensus        10 ~~~~~~p~~~~~~~~~~~~~~I~~Ak~~i~I~~~~~~~~-~~~~i~~aL~~a~~rGV~V~---ii~~~~~~~~~~~~~~~   85 (184)
T 2c1l_A           10 VYATGRPKGLIGMLENVWVSNHTPGEGTLYLISGFSNYN-GGVRFYETFTEHINQGGRVI---AILGGSTSQRLSSRQVV   85 (184)
T ss_dssp             TEESSSCCSHHHHHHHHHTTTCCTTSSEEEEEESSBCGG-GTTTTHHHHHHHHHTTCEEE---EEEECCSSSCCBBHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-CCEEEEHHHHHHHHCCCEEE---EEECCCCCCCCCHHHHH
T ss_conf             133488731899999887604778881299985233457-86665188999874587599---99547520224288899


Q ss_pred             HHHHHCCCEEEEEE
Q ss_conf             99998698242301
Q gi|254781065|r  259 RTFVELRIKPYYLH  272 (352)
Q Consensus       259 ~~L~~~gV~PYYl~  272 (352)
                      ..|...|+.-++..
T Consensus        86 ~~l~~~~~~v~~~~   99 (184)
T 2c1l_A           86 EELLNRGVEVHIIN   99 (184)
T ss_dssp             HHHHHTTCEEEEEE
T ss_pred             HHHHHCCCEEEEEC
T ss_conf             99972886599961


No 55 
>>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:1-85,A:153-227)
Probab=49.79  E-value=14  Score=17.67  Aligned_cols=71  Identities=15%  Similarity=0.059  Sum_probs=38.0

Q ss_pred             CCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE-----CCCCCCCCCCCCCCH
Q ss_conf             699588699999999999987989823279862345788999999999998698242301-----134576521011869
Q gi|254781065|r  213 ANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLH-----HPDLAAGTSHFRLTI  287 (352)
Q Consensus       213 ~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~-----~~d~v~G~~hf~v~~  287 (352)
                      +++...++|++.+|+++|++.|+.+--=|      +.+......+++.   +++..|.+.     ..++-+...++...-
T Consensus        17 l~~~~~i~~~~~~aL~~L~~~Gi~i~iaT------Gr~~~~v~~~~~~---l~i~~~~i~~NGa~v~~~~~~~~~~~~~K   87 (160)
T 1l6r_A           17 TDRDRLISTKAIESIRSAEKKGLTVSLLS------GNVIPVVYALKIF---LGINGPVFGENGGIMFDNDGSIKKFFSDK   87 (160)
T ss_dssp             BCTTSCBCHHHHHHHHHHHHTTCEEEEEC------SSCHHHHHHHHHH---HTCCSCEEEGGGTEEECTTSCEEESSCSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCEEEEEC------CCCCHHHHHHHHH---CCCCCEEEECCCEEEEECCCCEEEECCCH
T ss_conf             58999359999999999997799899984------8860215899997---18874078437559996894178744645


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781065|r  288 EEGQK  292 (352)
Q Consensus       288 ~~~~~  292 (352)
                      ..+++
T Consensus        88 ~~~~~   92 (160)
T 1l6r_A           88 AFAVN   92 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             76652


No 56 
>>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} (A:1-227)
Probab=49.78  E-value=18  Score=16.84  Aligned_cols=28  Identities=18%  Similarity=0.470  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             8999999999972997479997269813
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPL  155 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl  155 (352)
                      -.++.++++.++++++|+=|||+|..|-
T Consensus        37 ~~~l~~al~~~~~d~~v~~vil~g~g~~   64 (227)
T 3gkb_A           37 MRELRTVLTTLADDSSVRVIVFSSADPE   64 (227)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEESSSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             9999999999973999369999644555


No 57 
>>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:56-144)
Probab=49.76  E-value=18  Score=16.81  Aligned_cols=52  Identities=15%  Similarity=0.103  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHHHHHHCCCCCEEE
Q ss_conf             9899999999997299747999726981324------989999999998619981289
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVLKTLRYIKHVQIL  178 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll~~L~~i~hv~~I  178 (352)
                      ....+++..+.|++.|+|.++-...|++=.+      +.+.|..+|+++..|.++++-
T Consensus        19 ~~~~~~~~~~~l~~~peV~~~~~vsG~~d~i~~v~~~d~~~l~~~l~~i~~i~~~~T~   76 (89)
T 2cfx_A           19 KNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTH   76 (89)
T ss_dssp             GGGCHHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTTTEEEEEE
T ss_pred             CCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEE
T ss_conf             2487999999872398621668963689899999989999999999966885644899


No 58 
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:78-171)
Probab=48.95  E-value=19  Score=16.73  Aligned_cols=54  Identities=19%  Similarity=0.128  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             89999999999729974799972698132------4989999999998619981289874
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVLKTLRYIKHVQILRFH  181 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll~~L~~i~hv~~IRi~  181 (352)
                      ...+++..+.|++.|+|.++-.+-||-=.      -+.+.+..++++|..++.|...+-.
T Consensus        20 ~~~~~~~~~~l~~~p~V~~~~~~sG~~dl~~~v~~~~~~~l~~~i~~l~~~~gv~~~~t~   79 (94)
T 2e1c_A           20 AGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM   79 (94)
T ss_dssp             TTCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             410223345414797478840157888699999979999999999998468994089999


No 59 
>>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} (A:)
Probab=48.83  E-value=19  Score=16.71  Aligned_cols=168  Identities=9%  Similarity=-0.064  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHH---HCCCCCEEEEEECCEEEEEHH--HC---CHHHH
Q ss_conf             9899999999997299-747999726981324989999999998---619981289874343563434--33---99999
Q gi|254781065|r  127 SSKDTEAALAYIQEKS-QIWEVIFTGGDPLILSHKRLQKVLKTL---RYIKHVQILRFHSRVPIVDPQ--RI---NPELI  197 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~-eI~eVilSGGDPl~l~~~~L~~ll~~L---~~i~hv~~IRi~TR~pv~~P~--Ri---t~~L~  197 (352)
                      +.+.+++..+.++++- +|.-+-.+..|+-. ....++.+...+   ..+. .+.+++|+-..-....  ++   -.+++
T Consensus        49 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~lg-~~~i~~~~~~~~~~~~~~~~~~~l~~l~  126 (272)
T 2q02_A           49 DDLNYNQVRNLAEKYGLEIVTINAVYPFNQL-TEEVVKKTEGLLRDAQGVG-ARALVLCPLNDGTIVPPEVTVEAIKRLS  126 (272)
T ss_dssp             TTCCHHHHHHHHHHTTCEEEEEEEETTTTSC-CHHHHHHHHHHHHHHHHHT-CSEEEECCCCSSBCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             7777999999999839966886113677785-5889998999999999862-8789996388875024999999999999


Q ss_pred             HHHHHCCCCEEEEECCCCHHHCC---HHHHHHHHHHHH-CCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             99862599389993369958869---999999999998-79898232798623457889999999999986982423011
Q gi|254781065|r  198 QCLKEAGKPVYIAIHANHPYEFS---EEAIAAISRLAN-AGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH  273 (352)
Q Consensus       198 ~~l~~~~~~~~iv~H~NHp~Elt---~~~~~A~~~L~~-~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~  273 (352)
                      +..++++..+.+-.| +++..+.   +++.+.++.+.. .|+ .+.-+-+...-.|..+.+.++.      +-+=+|+|.
T Consensus       127 ~~a~~~Gv~~~~E~~-~~~~~~~~~~~~~~~l~~~~~~~~gi-~~D~~h~~~~~~~~~~~~~~~~------~~~i~~vHi  198 (272)
T 2q02_A          127 DLFARYDIQGLVEPL-GFRVSSLRSAVWAQQLIREAGSPFKV-LLDTFHHHLYEEAEKEFASRID------ISAIGLVHL  198 (272)
T ss_dssp             HHHHTTTCEEEECCC-CSTTCSCCCHHHHHHHHHHHTCCCEE-EEEHHHHHHCTTHHHHHHHHCC------GGGEEEEEE
T ss_pred             HHHHHCCEEEEEEEC-CCCCCCCCCHHHHHHHHHHCCCCEEE-ECCHHHHHHHCCCHHHHHHHHC------CCCEEEEEE
T ss_conf             875214838999846-76676448899999999860997233-1201567870898699998727------181999986


Q ss_pred             CCCCC-------CCCCCCCCHHHH----HHHHHHHHHHCCCCCC
Q ss_conf             34576-------521011869999----9999999982888654
Q gi|254781065|r  274 PDLAA-------GTSHFRLTIEEG----QKIVASLKEKISGLCQ  306 (352)
Q Consensus       274 ~d~v~-------G~~hf~v~~~~~----~~i~~~l~~~lsG~~~  306 (352)
                      .|-..       +..++.++..+|    ..+++.|+.  .||..
T Consensus       199 ~d~~~~~~~~~~~~~~~~~~~g~G~~d~~~i~~~L~~--~g~~g  240 (272)
T 2q02_A          199 SGVEDTRPTEALADEQRIXLSEKDVXQNYQQVQRLEN--XGYRG  240 (272)
T ss_dssp             CBCCCCSCGGGCCGGGCBCCCTTCSSCHHHHHHHHHH--TTCCS
T ss_pred             ECCCCCCCHHHHCCCCEECCCCCCCCCHHHHHHHHHH--CCCCC
T ss_conf             3268987505542675202699973679999999998--09974


No 60 
>>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:213-330)
Probab=48.45  E-value=19  Score=16.68  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             9899999999997299747999726981324989999999998619
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      ..+.++..++.+++...+  ++++.|||+..+.  ..++++.+.+-
T Consensus        67 ~~~~~~~~~~~~~~g~~v--~~l~~GDP~~~~~--~~~l~~~~~~~  108 (118)
T 1pjq_A           67 QEEINQILLREAQKGKRV--VRLKGGDPFIFGR--GGEELETLCHA  108 (118)
T ss_dssp             THHHHHHHHHHHHTTCEE--EEEESBCTTTSSS--HHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHCCCEE--EEECCCCCCCCHH--HHHHHHHHHCC
T ss_conf             999999999999759859--9976887321067--99999985048


No 61 
>>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} (A:195-331)
Probab=48.40  E-value=15  Score=17.36  Aligned_cols=101  Identities=11%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE----------------ECCCCCCC----CHHHHHHHHHHHHCCCCCEEEEEECCEEEEE
Q ss_conf             999999999972997479997----------------26981324----9899999999986199812898743435634
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIF----------------TGGDPLIL----SHKRLQKVLKTLRYIKHVQILRFHSRVPIVD  188 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVil----------------SGGDPl~l----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~  188 (352)
                      +.-.+..+|+++||.|..|.-                +||-+++.    +.+....+++.|+-+.+--.+ =++++.+..
T Consensus        11 ~nA~~la~~L~~~p~V~~V~yPgl~~~~~~~~~~~~~~~~G~~~sf~l~~~~~a~~f~~~l~l~~~~~sl-G~~~TL~~~   89 (137)
T 1pff_A           11 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSL-GGPESLIQH   89 (137)
T ss_dssp             HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSC-CSSSCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEECCC-CCCCCEEEC
T ss_conf             9999999978758984341168877850789987413687604789848899999999837822451367-877514657


Q ss_pred             HHHCC-----HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH
Q ss_conf             34339-----9999998625993899933699588699999999999
Q gi|254781065|r  189 PQRIN-----PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL  230 (352)
Q Consensus       189 P~Rit-----~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L  230 (352)
                      |..-+     ++-.....-...-+-+.+-+.++.+|-....+|++++
T Consensus        90 ~~~~~h~~~~~~~~~~~Gi~~~liRlSvGlEd~edLi~dl~~AL~~~  136 (137)
T 1pff_A           90 PASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  136 (137)
T ss_dssp             HHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             63015322999999966989296999970189999999999999975


No 62 
>>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:127-287)
Probab=48.10  E-value=16  Score=17.30  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999729974799972698132498999999999861
Q gi|254781065|r  133 AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       133 ~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      ..+.++.+...++.|++|||   +..|..|..-|.+...
T Consensus       113 ~~~~~~~~~~~~~~l~l~GG---Va~N~~l~~~l~~~l~  148 (161)
T 3eno_A          113 EVLERALYVSGKDEILMAGG---VALNRRLRDMVTNMAR  148 (161)
T ss_dssp             HHHHHHHHHHTCSEEEEESS---GGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEECCC---HHHHHHHHHHHHHHHH
T ss_conf             99999998707762121362---7778999999999999


No 63 
>>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, cytoplasm, hydrolase, protease, thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} (A:)
Probab=47.24  E-value=20  Score=16.61  Aligned_cols=148  Identities=14%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             EEEEEECCCCCCCCHHH-HHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEEC-----------
Q ss_conf             79997269813249899-999999986199812898743435634343399999998625993899933-----------
Q gi|254781065|r  145 WEVIFTGGDPLILSHKR-LQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIH-----------  212 (352)
Q Consensus       145 ~eVilSGGDPl~l~~~~-L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H-----------  212 (352)
                      ..|++||=+|+-.-... =..+.+.|..  ++..++++++..=+.=..+.+.+.+.+.++...+++++-           
T Consensus         4 ~~vLiTGF~PF~~~~~NpS~~i~~~L~~--~~~~~~i~~~~lpV~y~~~~~~~~~~~~~~~p~~vih~Gv~~~~~~i~lE   81 (215)
T 3giu_A            4 XHILVTGFAPFDNQNINPSWEAVTQLED--IIGTHTIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPE   81 (215)
T ss_dssp             CEEEEEEECCCTTCSCCHHHHHHHHSCS--EETTEEEEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECTTCCSBEEB
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEEECCEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEE
T ss_conf             8999961178898998818999998763--53686599996425589999999999985788469999841885436777


Q ss_pred             --------CCCHHHC-------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCH------HHHHHHHH
Q ss_conf             --------6995886-------------------99999999999987989823279862345788------99999999
Q gi|254781065|r  213 --------ANHPYEF-------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDP------EILANLMR  259 (352)
Q Consensus       213 --------~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~------~~l~~L~~  259 (352)
                              ++-|+.-                   +-...+.+++|+++|+++.        +.+|+      .++-...+
T Consensus        82 ~~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~~~~~l~~~g~~~~--------~S~daG~YlCN~i~Y~sL~  153 (215)
T 3giu_A           82 RVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLPVKAXTQSIINQGLPGA--------LSNSAGTFVCNHTLYHLGY  153 (215)
T ss_dssp             CEEESCEECSSCCTTSCCCEEECSCTTSCSEEECCSCHHHHHHHHHHTTCCBC--------CBSCCCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE--------ECCCCCCHHHHHHHHHHHH
T ss_conf             88874465667886798568887468993330558889999999986699807--------7569862062689999999


Q ss_pred             HHHHCC--CEEEEEECCCCCCCC----CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999869--824230113457652----1011869999999999998288
Q gi|254781065|r  260 TFVELR--IKPYYLHHPDLAAGT----SHFRLTIEEGQKIVASLKEKIS  302 (352)
Q Consensus       260 ~L~~~g--V~PYYl~~~d~v~G~----~hf~v~~~~~~~i~~~l~~~ls  302 (352)
                      .+...+  +.--.+|.+-.-.++    ..+..+++...+.++.+-+.+.
T Consensus       154 ~~~~~~~~~~~~FiHVP~~~~~~~~~~~~~~~~l~~~~~~i~~~i~~~~  202 (215)
T 3giu_A          154 LQDKHYPHLRFGFIHVPYIPEQVIGKPDTPSXPLEKIVAGLTAAIEAIS  202 (215)
T ss_dssp             HHHHTCTTCEEEEEEECCCGGGGTTCTTCCCCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9985389971699976897154215899998899999999999999964


No 64 
>>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolase, structural genomics; HET: MSE; 2.10A {Clostridium difficile 630} (A:1-84,A:199-274)
Probab=46.74  E-value=16  Score=17.26  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=14.2

Q ss_pred             CCHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             995886999999999999879898
Q gi|254781065|r  214 NHPYEFSEEAIAAISRLANAGIIL  237 (352)
Q Consensus       214 NHp~Elt~~~~~A~~~L~~~Gv~v  237 (352)
                      ++-.++.|++.+++++|++.|+.+
T Consensus        18 ~~~~~i~~~~~~~L~~L~~~Gi~i   41 (160)
T 3fzq_A           18 DEVYGIPESAKHAIRLCQKNHCSV   41 (160)
T ss_dssp             BTTTBCCHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             898945999999999998689989


No 65 
>>1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} (A:)
Probab=46.50  E-value=20  Score=16.62  Aligned_cols=146  Identities=14%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEE-------------
Q ss_conf             7999726981324989999999998619981289874343563434339999999862599389993-------------
Q gi|254781065|r  145 WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAI-------------  211 (352)
Q Consensus       145 ~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~-------------  211 (352)
                      ..|++||=+|+-.-...=.+.+-....=..+.-++|.++..=+.-..+.+.+.+.+++..-.+++.+             
T Consensus         3 ~~IliTGF~pF~~~~~NPS~~i~~~L~~~~~~~~~i~~~~lpV~~~~~~~~l~~~l~~~~pd~vlh~Gv~~~~~~i~lE~   82 (215)
T 1aug_A            3 KKVLLTGFDPFGGETVNPSWEAVKRLNGAAEGPASIVSEQVPTVFYKSLAVLREAIKKHQPDIIICVGQAGGRMQITPER   82 (215)
T ss_dssp             EEEEEEEECCCSSCSCCHHHHHHHTTTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSBEEBS
T ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE
T ss_conf             67999804898969868399999984442589846999976620888999999999857871899997038853698400


Q ss_pred             ------CCCCHHHC-------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCH------HHHHHHHHH
Q ss_conf             ------36995886-------------------99999999999987989823279862345788------999999999
Q gi|254781065|r  212 ------HANHPYEF-------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDP------EILANLMRT  260 (352)
Q Consensus       212 ------H~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~------~~l~~L~~~  260 (352)
                            .+.-|++.                   +-...+.+++|+++|+++.        +-+|+      .++-...+.
T Consensus        83 ~A~N~~~~~~pD~~g~~p~~~~i~~~gp~~~~t~lp~~~i~~~l~~~g~~~~--------~S~daG~YlCN~~~Y~sl~~  154 (215)
T 1aug_A           83 VAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAA--------VSYTAGTFVCNHLFYGLMDE  154 (215)
T ss_dssp             EEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHTTCCBC--------CBSCCCSSHHHHHHHHHHHH
T ss_pred             EECCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEE--------ECCCCCCCHHHHHHHHHHHH
T ss_conf             3034676642113689888987568997536738999999998875599848--------81798741225799999999


Q ss_pred             HH--HCCCEEEEEECCCCC---CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99--869824230113457---652101186999999999999
Q gi|254781065|r  261 FV--ELRIKPYYLHHPDLA---AGTSHFRLTIEEGQKIVASLK  298 (352)
Q Consensus       261 L~--~~gV~PYYl~~~d~v---~G~~hf~v~~~~~~~i~~~l~  298 (352)
                      ..  ...+.--.+|.+---   .....-..+++...+.++.+-
T Consensus       155 ~~~~~~~~~~~FVHVP~~~~~~~~~~~~~~~le~~~~~i~~~i  197 (215)
T 1aug_A          155 ISRHHPHIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIAA  197 (215)
T ss_dssp             HHHHCTTCEEEEEEECCCGGGSSSSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9962899826999878961202557999877999999999999


No 66 
>>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} (A:317-705)
Probab=45.71  E-value=21  Score=16.48  Aligned_cols=14  Identities=0%  Similarity=0.078  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999999869
Q gi|254781065|r  252 EILANLMRTFVELR  265 (352)
Q Consensus       252 ~~l~~L~~~L~~~g  265 (352)
                      ..+.+.+++.....
T Consensus       324 ~~l~~~~~~~~~~s  337 (389)
T 2o8r_A          324 REIIDILEIQLRDN  337 (389)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             99999999973326


No 67 
>>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} (A:1-213)
Probab=45.13  E-value=22  Score=16.33  Aligned_cols=46  Identities=15%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCC------------CH-------HHHHHHHHHHHCCC
Q ss_conf             899999999997299747999726981324------------98-------99999999986199
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLIL------------SH-------KRLQKVLKTLRYIK  173 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------------~~-------~~L~~ll~~L~~i~  173 (352)
                      -.++.++++.++++++|+-||++|+++-..            +.       ..+..++..+...+
T Consensus        41 ~~~l~~~~~~~~~~~~v~~ivl~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (213)
T 1hzd_A           41 IKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLP  105 (213)
T ss_dssp             HHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999858993599997699881589987455540452025677899999999975699


No 68 
>>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:119-282)
Probab=44.79  E-value=17  Score=17.09  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=25.2

Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             99997299747999726981324989999999998619981
Q gi|254781065|r  135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHV  175 (352)
Q Consensus       135 ~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv  175 (352)
                      +.+..+...++.|++|||   +..|..|.+-+.+...-.++
T Consensus       118 ~~~~~~~~~~~~l~lsGG---Va~N~~l~~~l~~~l~~~~~  155 (164)
T 2ivn_A          118 TERAVAHTEKDEVVLVGG---VAANNRLREMLRIMTEDRGI  155 (164)
T ss_dssp             HHHHHHHHCCSEEEEESG---GGGCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCCCEEEECH---HHHHHHHHHHHHHHHHHCCC
T ss_conf             998654035553254155---78999999999999997699


No 69 
>>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CBIE); beta, alpha-beta-alpha sandwich, structural genomics, PSI; HET: SAH; 2.27A {Archaeoglobus fulgidus dsm 4304} (A:1-123)
Probab=44.59  E-value=16  Score=17.17  Aligned_cols=42  Identities=10%  Similarity=0.180  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             8999999999972997479997269813249899999999986199
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK  173 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~  173 (352)
                      ....+......++...|  ++++-|||+..+.  ..++++++..++
T Consensus        75 ~~~~~~~~~~~~~g~~V--~~l~~GDp~~y~~--~~~l~~~~~~~~  116 (123)
T 2bb3_A           75 KGDEIRRIXEEGREREV--AVISTGDPXVAGL--GRVLREIAEDVE  116 (123)
T ss_dssp             SHHHHHHHHHHHHHSCE--EEEESBCTTTTTS--HHHHHTSCCSSE
T ss_pred             CHHHHHHHHHHHCCCCE--EEEECCCCCCCCH--HHHHHHHHCCCC
T ss_conf             69999999999769974--9997698662546--899999842688


No 70 
>>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} (A:1-244)
Probab=43.88  E-value=18  Score=16.87  Aligned_cols=27  Identities=7%  Similarity=0.156  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -.++.++++.++++++++=|||||.++
T Consensus        39 ~~~l~~al~~~~~d~~~~~vVl~g~g~   65 (244)
T 1wz8_A           39 HRGLARVWRDLEAVEGVRAVLLRGEGG   65 (244)
T ss_dssp             HHHHHHHHHHHTTCTTCSEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999996299974999964554


No 71 
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=43.64  E-value=5.9  Score=20.33  Aligned_cols=50  Identities=12%  Similarity=0.050  Sum_probs=31.5

Q ss_pred             CHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             95886999999999999879898232798623457889999999999986982423
Q gi|254781065|r  215 HPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY  270 (352)
Q Consensus       215 Hp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY  270 (352)
                      +-.+..|.+.+++++|+++|+++.-=|      |.+..+.....++|..+|+..|.
T Consensus        14 ~~~~~~~~a~e~l~~L~~~G~~~~ivT------N~~~~~~~~~~~~L~~lg~~~~~   63 (131)
T 1zjj_A           14 RGNRAIPGVRELIEFLKERGIPFAFLT------NNSTKTPEMYREKLLKMGIDVSS   63 (131)
T ss_dssp             ETTEECTTHHHHHHHHHHHTCCEEEEE------SCCSSCHHHHHHHHHTTTCCCCG
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             899958449999999997799689994------89999999999999976998881


No 72 
>>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} (A:1-207)
Probab=43.37  E-value=23  Score=16.15  Aligned_cols=27  Identities=30%  Similarity=0.272  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -+++.++++.+.++++++=|||+||.+
T Consensus        37 ~~~l~~~~~~~~~d~~v~~vvi~~~g~   63 (207)
T 2ppy_A           37 YKEFNAAIDDIRFDPDIKVVIVXSDVP   63 (207)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEECST
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             999999999997597863233213443


No 73 
>>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:108-274)
Probab=43.27  E-value=23  Score=16.14  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf             72997479997269813249899999999986199812
Q gi|254781065|r  139 QEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQ  176 (352)
Q Consensus       139 ~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~  176 (352)
                      .+...|+.|+++||  .+-++..|.+.|+.+.+...++
T Consensus       125 ~~~~~i~~iv~~GG--~va~N~~lr~~l~~~~~~~~~~  160 (167)
T 2ews_A          125 AREFKTENIVYIGS--SFHNNALLRKVVEDYTVLRGCK  160 (167)
T ss_dssp             HHHTTCCEEEEESG--GGTTCHHHHHHHHHHHHHTTCE
T ss_pred             HHCCCCCCEEEECC--HHHCCHHHHHHHHHHHHHCCCE
T ss_conf             54239893999896--2650499999999999768998


No 74 
>>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A (A:1-82,A:183-258)
Probab=42.63  E-value=20  Score=16.59  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             999999999972997479997269813249899999999986
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLR  170 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~  170 (352)
                      +...++++.+++. .+.=++.||..     ......+++.+.
T Consensus        23 ~~~~e~L~~l~~~-G~~i~i~Tgr~-----~~~~~~~l~~l~   58 (158)
T 2pq0_A           23 LSTIEAVRRLKQS-GVYVAIATGRA-----PFXFEHVRKQLG   58 (158)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSSC-----GGGSHHHHHHHT
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCCC-----HHHHHHHHHHHC
T ss_conf             9999999999978-99999989998-----799899999744


No 75 
>>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to P3F inhibitor; HET: P3F; 1.78A {Escherichia coli} (A:278-415)
Probab=42.51  E-value=7.4  Score=19.60  Aligned_cols=96  Identities=13%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC-----------------CCCCCCC------HHHHHHHHHHHHCCCCCEEEEEE----
Q ss_conf             99999999997299747999726-----------------9813249------89999999998619981289874----
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTG-----------------GDPLILS------HKRLQKVLKTLRYIKHVQILRFH----  181 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSG-----------------GDPl~l~------~~~L~~ll~~L~~i~hv~~IRi~----  181 (352)
                      +.-.+..+|+++||.|..|.--|                 |-++++.      .+....++++      .+.+.++    
T Consensus        11 ~na~~la~~L~~~p~V~~V~yP~l~s~~~~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~f~~~------l~lf~~~~SlG   84 (138)
T 2fq6_A           11 ESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDN------FSLFSMAYSWG   84 (138)
T ss_dssp             HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTT------CSSCEECSCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHC------CCCCEEEECCC
T ss_conf             999999988875455432232222204579988631589866347899436899999999972------99065956778


Q ss_pred             -CCEEEEEHHHCCHHHHHHHHHCCC---CEEEEECCCCHHHCCHHHHHHHHHH
Q ss_conf             -343563434339999999862599---3899933699588699999999999
Q gi|254781065|r  182 -SRVPIVDPQRINPELIQCLKEAGK---PVYIAIHANHPYEFSEEAIAAISRL  230 (352)
Q Consensus       182 -TR~pv~~P~Rit~~L~~~l~~~~~---~~~iv~H~NHp~Elt~~~~~A~~~L  230 (352)
                       ++..+..|...+..=..--.+.+.   -+-+.+-...|.+|-....+|++++
T Consensus        85 ~~~sL~~~~~~~~~~~~~~~~~~gi~~~liRisvGLEd~~dLiadl~~Al~~~  137 (138)
T 2fq6_A           85 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  137 (138)
T ss_dssp             SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             CCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             88665437834344457913765999697999855289999999999999966


No 76 
>>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} (A:1-198)
Probab=42.23  E-value=24  Score=16.03  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             89999999999729974799972698132
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI  156 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~  156 (352)
                      -+++.++++.++++++++=||+||+++.-
T Consensus        28 ~~~l~~~l~~~~~d~~~~vvil~g~~~~F   56 (198)
T 1uiy_A           28 ALSLLQALDDLEADPGVRAVVLTGRGKAF   56 (198)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             99999999999739996499996654332


No 77 
>>1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=41.51  E-value=24  Score=15.95  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             HHHCCCCEEEEECCC---CH--HHCCHHHHHHHHHHHHCCCEEEECHHHHHCCC
Q ss_conf             862599389993369---95--88699999999999987989823279862345
Q gi|254781065|r  200 LKEAGKPVYIAIHAN---HP--YEFSEEAIAAISRLANAGIILLSQSVLLKGIN  248 (352)
Q Consensus       200 l~~~~~~~~iv~H~N---Hp--~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVN  248 (352)
                      +......+++|||-+   -|  +|+++|.   .+.|.+.|+.|+.+|=+|.|+-
T Consensus        69 ~e~~~~~iVvVTh~~GF~~pg~~e~~~e~---~~~L~~~Gv~V~t~TH~lSg~e  119 (206)
T 1t57_A           69 SEXVEGNIVSVTHHAGFREKGQLELEDEA---RDALLERGVNVYAGSHALSGVG  119 (206)
T ss_dssp             HTTCCSEEEEECCCTTSSSTTCCSSCHHH---HHHHHHHTCEEECCSCTTTTHH
T ss_pred             HHHCCCCEEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCEEEEECCCCCCCH
T ss_conf             98638979999465787899966469999---9999976988999513034415


No 78 
>>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} (A:1-236)
Probab=41.49  E-value=7.7  Score=19.49  Aligned_cols=27  Identities=15%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -.++.++++.++++++++-||++||.+
T Consensus        46 ~~~l~~~l~~~~~d~~~~~vi~~~~~~   72 (236)
T 3g64_A           46 YADLRDLLAELSRRRAVRALVLAGEGR   72 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEEECSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999997399943999852554


No 79 
>>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} (A:)
Probab=41.12  E-value=25  Score=15.91  Aligned_cols=26  Identities=12%  Similarity=0.150  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999999729974799972698
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      -.++.++++-++++++++=||++|++
T Consensus        33 ~~~l~~al~~~~~d~~v~~vi~~~~g   58 (263)
T 3lke_A           33 GTSLLEAIRAGNNETSIHSIILQSKH   58 (263)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEEEEESC
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             99999999998509995799996189


No 80 
>>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:1-122)
Probab=41.01  E-value=25  Score=15.90  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99999999729974799972698132498999999999861
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      .+++.+.+++...|  ++++.|||+..+.  -.+++..+.+
T Consensus        67 ~~~i~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~  103 (122)
T 2z6r_A           67 FENIVLPLAKENDV--AFLTPGDPLVATT--HAELRIRAKR  103 (122)
T ss_dssp             HHHHTHHHHTTSCE--EEEESBCTTSSSS--THHHHHHHHH
T ss_pred             HHHHHHHHHCCCCE--EEEECCCCCCCCC--HHHHHHHHHH
T ss_conf             99999999769988--9996786554446--9999999986


No 81 
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=40.52  E-value=21  Score=16.45  Aligned_cols=51  Identities=6%  Similarity=-0.005  Sum_probs=35.0

Q ss_pred             CCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             995886999999999999879898232798623457889999999999986982423
Q gi|254781065|r  214 NHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY  270 (352)
Q Consensus       214 NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY  270 (352)
                      .+-.+.-|.+.+++++|+++|+++.--|      |-...+...+.++|-..|+..|.
T Consensus        29 ~~~~~~~pga~e~l~~L~~~G~~~~~vT------N~~~~~~~~~~~~l~~~gi~~~~   79 (145)
T 1vjr_A           29 YLDDSLLPGSLEFLETLKEKNKRFVFFT------NNSSLGAQDYVRKLRNXGVDVPD   79 (145)
T ss_dssp             EETTEECTTHHHHHHHHHHTTCEEEEEE------SCTTSCHHHHHHHHHHTTCCCCG
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCEEEEC------CCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             8799358209999999997699789945------89989999999999851556652


No 82 
>>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284)
Probab=39.90  E-value=17  Score=17.10  Aligned_cols=52  Identities=12%  Similarity=0.044  Sum_probs=32.7

Q ss_pred             HHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             5886999999999999879898232798623457889999999999986982423011
Q gi|254781065|r  216 PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH  273 (352)
Q Consensus       216 p~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~  273 (352)
                      -.++-|.+.+++++|+++|+++.-=|      |.+..+...+.++|-..|+.+|+-.+
T Consensus        28 ~~~~~pg~~~~L~~L~~~g~~~~i~T------n~~~~~~~~~~~~l~~~g~~~~f~~~   79 (162)
T 2hx1_A           28 YNGLLPGIENTFDYLKAQGQDYYIVT------NDASRSPEQLADSYHKLGLFSITADK   79 (162)
T ss_dssp             TTEECTTHHHHHHHHHHTTCEEEEEE------CCCSSCHHHHHHHHHHTTCTTCCGGG
T ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHCCCCCCCCHHE
T ss_conf             99848319999999998699589996------89998769999885402444533103


No 83 
>>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:55-141)
Probab=39.19  E-value=26  Score=15.71  Aligned_cols=53  Identities=15%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHHH-HHHCCCCCEEEE
Q ss_conf             989999999999729974799972698132------49899999999-986199812898
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVLK-TLRYIKHVQILR  179 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll~-~L~~i~hv~~IR  179 (352)
                      ....+++..+.|+++|+|.++-..-|+.=.      -+.+.|.+++. .|..++.|..++
T Consensus        19 ~~~~~~~~~~~l~~~p~V~~~~~vtG~~d~i~~v~~~~~~~l~~~i~~~l~~~~gv~~~~   78 (87)
T 1i1g_A           19 KPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVC   78 (87)
T ss_dssp             CGGGHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEE
T ss_pred             CCCHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             530267777762279718998886379989999998999999999999863599973899


No 84 
>>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, X-RAY, zinc, alternative splicing; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* (A:)
Probab=38.97  E-value=24  Score=15.95  Aligned_cols=75  Identities=24%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             HHHHHHHHH---CC-CEEEEEE-ECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC
Q ss_conf             999999972---99-7479997-269813249899999999986199812898743435634343399999998625993
Q gi|254781065|r  132 EAALAYIQE---KS-QIWEVIF-TGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP  206 (352)
Q Consensus       132 ~~~~~Yi~~---~~-eI~eVil-SGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~  206 (352)
                      ..-++||.+   +| ..-.|.- +-=-|   -.+=-.++.+-|.+-+||..-=+.+|+--.+|+-  .+=+..|.+.|.+
T Consensus        83 ~~Fl~~~~~~~l~~~~~y~ITwy~SWSP---C~~CA~kia~FL~~~~~v~L~If~sRLY~~~~~~--q~gLr~L~~aG~~  157 (207)
T 3ir2_A           83 LCFLDVIPFWKLDLDQDYRVTCFTSWSP---CFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRA--QEGLRTLAEAGAK  157 (207)
T ss_dssp             HHHHHHGGGGCCCTTSCEEEEEEEEECC---CHHHHHHHHHHHHHCTTEEEEEEEEECCCCSSSH--HHHHHHHHHTTCE
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEEEECCC---HHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCHHH--HHHHHHHHHCCCC
T ss_conf             9999875141579675378987772688---4999999999997699907997763413556077--8999999986996


Q ss_pred             EEEEE
Q ss_conf             89993
Q gi|254781065|r  207 VYIAI  211 (352)
Q Consensus       207 ~~iv~  211 (352)
                      |.||.
T Consensus       158 v~iM~  162 (207)
T 3ir2_A          158 ISIMT  162 (207)
T ss_dssp             EEECC
T ss_pred             EEEEC
T ss_conf             89727


No 85 
>>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} (A:1-90,A:197-282)
Probab=38.77  E-value=27  Score=15.67  Aligned_cols=36  Identities=22%  Similarity=0.209  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             999999999972997479997269813249899999999986
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLR  170 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~  170 (352)
                      +...+++..+++. .+.=++.||-....     +..++..+.
T Consensus        25 ~~~~~al~~L~~~-Gi~lvi~Tgr~~~~-----~~~~~~~l~   60 (176)
T 1rkq_A           25 PAVKNAIAAARAR-GVNVVLTTGRPYAG-----VHNYLKELH   60 (176)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSSCGGG-----THHHHHHTT
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCCCHHH-----HHHHHHHHC
T ss_conf             9999999999988-99999998998899-----999999847


No 86 
>>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A (A:295-407,A:484-593)
Probab=38.73  E-value=27  Score=15.66  Aligned_cols=54  Identities=11%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEE----ECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             98999999999972997479997----269813249899999999986199812898743
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIF----TGGDPLILSHKRLQKVLKTLRYIKHVQILRFHS  182 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVil----SGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~T  182 (352)
                      ..+++.++++.++++++++-|+|    .|||...  ...+...+.++...+..-+.-++.
T Consensus        29 ~~~~l~~~l~~~~~d~~vk~vvl~~~s~Ggdv~~--~~~i~~~~~~~~~~~kpvva~~~g   86 (223)
T 3bf0_A           29 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA--SEVIRAELAAARAAGKPVVVSMGG   86 (223)
T ss_dssp             EHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHH--HHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHH--HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             6277899998775066644999996399866679--999999999998659977999678


No 87 
>>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} (A:121-240)
Probab=38.56  E-value=27  Score=15.65  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=39.2

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCH--HHCCHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             99999986259938999336995--886999999999999879898232798
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHP--YEFSEEAIAAISRLANAGIILLSQSVL  243 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp--~Elt~~~~~A~~~L~~~Gv~v~nQsVL  243 (352)
                      -|+...|++.+..+.++-.-+.+  ....+.+....+.+.+.||.+..++-.
T Consensus        41 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v   92 (120)
T 3kd9_A           41 IEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEIT   92 (120)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCEEEEEEECCEE
T ss_conf             7788998752874316863233455533221022222102202456522137


No 88 
>>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} (A:)
Probab=37.27  E-value=25  Score=15.87  Aligned_cols=47  Identities=19%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC---------CCCCCCH-------------HHHHHHHHHHHCCCC
Q ss_conf             8999999999972997479997269---------8132498-------------999999999861998
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG---------DPLILSH-------------KRLQKVLKTLRYIKH  174 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG---------DPl~l~~-------------~~L~~ll~~L~~i~h  174 (352)
                      -+++.++++.+..+++++-|||+||         |.-.+.+             ..+..++..+..++-
T Consensus        36 ~~~l~~al~~~~~d~~v~~vil~~~~~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k  104 (289)
T 3h0u_A           36 VRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPA  104 (289)
T ss_dssp             HHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999986599956999953554320124678888763012201123566788999999999876


No 89 
>>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii} (A:1-104)
Probab=37.18  E-value=28  Score=15.50  Aligned_cols=95  Identities=22%  Similarity=0.242  Sum_probs=61.6

Q ss_pred             CCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             27430000011223301255556789899999999997299747999726981324989999999998619981289874
Q gi|254781065|r  102 LHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFH  181 (352)
Q Consensus       102 t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~  181 (352)
                      +..+.+|||.=....       ..--..+.++.-+|..++.-..+++-.+|--....-..+..++..+..-. +..    
T Consensus         2 ~~~~~~Y~RvSt~~Q-------~~sl~~Q~~~~~~~a~~~~~~~~~~~d~~~g~~~~R~~~~~ll~~~~~~~-~~~----   69 (104)
T 3lhk_A            2 NAKIIGYARVSFNAQ-------KDDLERQIQLIKSYAEENGWDIQILKDIGSGLNEKRKNYKKLLKXVXNRK-VEK----   69 (104)
T ss_dssp             CCEEEEEEEESSGGG-------HHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTCTTCHHHHHHHHHHHTTC-EEE----
T ss_pred             CCEEEEEEEECCCHH-------HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CCE----
T ss_conf             965999999883103-------34299999999999997698238998477655665656999999987798-666----


Q ss_pred             CCEEEEEHHHC---C-HHHHHHHHHCCCCEEEE
Q ss_conf             34356343433---9-99999986259938999
Q gi|254781065|r  182 SRVPIVDPQRI---N-PELIQCLKEAGKPVYIA  210 (352)
Q Consensus       182 TR~pv~~P~Ri---t-~~L~~~l~~~~~~~~iv  210 (352)
                        +.+....|+   + +-+.++|.+.+..++.+
T Consensus        70 --iiv~~~dRl~R~~~~~l~~~l~~~gv~v~~~  100 (104)
T 3lhk_A           70 --VIIAYPDRLTRFGFETLKEFFKSYGTEIVII  100 (104)
T ss_dssp             --EEESSHHHHCSSCHHHHHHHHHHTTCEEEES
T ss_pred             --EEEECCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             --9986687334229999999999879889996


No 90 
>>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A (A:)
Probab=36.64  E-value=29  Score=15.44  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             8999999999972997479997269813249899999999
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLK  167 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~  167 (352)
                      ..++.++++.++++++++=||++|+.+.--+-..+.+.-.
T Consensus        32 ~~~l~~~l~~~~~d~~~~~vil~g~~~~F~aG~d~~~~~~   71 (243)
T 2q35_A           32 VEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIR   71 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHC
T ss_conf             9999999999975999359998176322122366777640


No 91 
>>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:)
Probab=36.62  E-value=29  Score=15.44  Aligned_cols=86  Identities=12%  Similarity=0.047  Sum_probs=51.6

Q ss_pred             CCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             10000076887145207537999727430000011223301255556789899999999997299747999726981324
Q gi|254781065|r   78 IGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLIL  157 (352)
Q Consensus        78 l~E~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l  157 (352)
                      .+.+-+.|...+.++-.++..-.  ...+++=.|.|=+-..   ++.....+    ...-|++-+.|..++-+||-|.-+
T Consensus        33 ~~~e~~~P~~~~~~~~~~g~~~~--~~~~lfPGYvFv~~d~---~~~~~~~~----~~~~ir~~~gV~~~v~~~~~p~~i  103 (119)
T 1nz8_A           33 KIFQVLIPTEEVVELREGGKKEV--VRKKLFPGYLFIQMDL---GDEEEPNE----AWEVVRGTPGITGFVGAGMRPVPL  103 (119)
T ss_dssp             TCCEEECSEEEEEEECSSSCEEE--EEEESSTTEEEEEECC---CSSSSCCH----HHHHHHHSTTCCCCCCSSSSSCBC
T ss_pred             CCCEEEECCEEEEEEECCCEEEE--EEEECCCEEEEEEEEE---CCCCCCHH----HHHHHHCCCCCEEECCCCCEECCC
T ss_conf             45367736888899982871688--7664478089999982---67555402----557766599934986899976518


Q ss_pred             CHHHHHHHHHHHHCC
Q ss_conf             989999999998619
Q gi|254781065|r  158 SHKRLQKVLKTLRYI  172 (352)
Q Consensus       158 ~~~~L~~ll~~L~~i  172 (352)
                      +++..++++..+.++
T Consensus       104 ~~~ei~~i~~~~~e~  118 (119)
T 1nz8_A          104 SPDEVRHILEVSGLL  118 (119)
T ss_dssp             CHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHCCC
T ss_conf             999999999973879


No 92 
>>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus HB8} (A:1-120)
Probab=36.35  E-value=29  Score=15.41  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             899999999997299747999726981324989999999998619
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      .+.++++++..++...|  ++++.|||+..+.  -.++++.+.+.
T Consensus        62 ~~~~~~~~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~~  102 (120)
T 1va0_A           62 EEIHRLLLRHARAHPFV--VRLKGGDPMVFGR--GGEEVLFLLRH  102 (120)
T ss_dssp             HHHHHHHHHHHHTSSEE--EEEESBCTTSSSS--HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEE--EEECCCCCCEECH--HHHHHHHHHHC
T ss_conf             99999999985204302--3302675411027--88999987512


No 93 
>>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8} (A:)
Probab=36.20  E-value=28  Score=15.52  Aligned_cols=56  Identities=20%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHHH-HHHCCCCCEEEEEEC
Q ss_conf             989999999999729974799972698-1324-----9899999999-986199812898743
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVLK-TLRYIKHVQILRFHS  182 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll~-~L~~i~hv~~IRi~T  182 (352)
                      ....+++..+.+++.|+|.++-...|+ =+++     +.+.|..++. .|.+++.|..++-+.
T Consensus        11 ~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~T~i   73 (92)
T 2djw_A           11 RGNRVQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQGILSLEGVERTETLL   73 (92)
T ss_dssp             CGGGHHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             879899999999769898789898588989999998999999999999863599981799999


No 94 
>>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} (A:64-163)
Probab=36.17  E-value=29  Score=15.39  Aligned_cols=53  Identities=25%  Similarity=0.220  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHH-HHHCCCCCEEEE
Q ss_conf             9899999999997299747999726981-324-----9899999999-986199812898
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLK-TLRYIKHVQILR  179 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~-~L~~i~hv~~IR  179 (352)
                      +.+.+++..+.|++.|+|.++-..-||. +++     +.+.+..++. .|.++++|..+.
T Consensus        22 ~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~~~v~~~d~~~l~~~i~~~l~~~~gv~~~~   81 (100)
T 2gqq_A           22 APDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTR   81 (100)
T ss_dssp             STTHHHHHHHHHSSCTTEEEEEEESSSSSEEEEEECSSHHHHHHHTTTSSTTSSSCSEEE
T ss_pred             CCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             511233334530588747899996068858999998987999999999985489983999


No 95 
>>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395)
Probab=35.56  E-value=30  Score=15.33  Aligned_cols=45  Identities=7%  Similarity=0.031  Sum_probs=18.9

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             989999999999729974799972698132498999999999861
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +.+.+.++++-+.++|++.-|++.+.=+..........++..+.+
T Consensus        58 ~~~~~~~~l~~l~~d~~vd~iiv~~~~~~~~~~~~~~~~i~~~~~  102 (152)
T 2fp4_B           58 KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRE  102 (152)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             678899999999719998789999808741369999999999995


No 96 
>>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* (A:1-131)
Probab=35.55  E-value=30  Score=15.33  Aligned_cols=40  Identities=25%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             89999999999729974799972698132498999999999861
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      .+.++.+++..++...|  ++++.|||+..+.  ..++++.+.+
T Consensus        61 ~~~~~~~~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~  100 (131)
T 2zvb_A           61 LDRAEEALERALSGQRV--ALVSGGDPGIYGM--AAPVLELMEE  100 (131)
T ss_dssp             HHHHHHHHHHHHTTCEE--EEEESBCTTSSSS--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEE--EEEECCCCCCCCC--HHHHHHHHHH
T ss_conf             99999999999719918--9983576654440--5899999998


No 97 
>>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250)
Probab=35.26  E-value=13  Score=17.88  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             HHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE-EEC
Q ss_conf             9999986259938999336995886999999999999879898232798623457889999999999986982423-011
Q gi|254781065|r  195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY-LHH  273 (352)
Q Consensus       195 ~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY-l~~  273 (352)
                      +.++.+++.+.++.++|  |-+..   ......++|.+.|+.+..+.+    +..+++.+..+.+   .+|+.|-- ++.
T Consensus        26 e~i~~l~~~G~~~~i~T--n~s~~---~~~~~~~~l~~~gi~~~~~~~----~~~~p~~~~~~~~---~~~v~~~~~~~V   93 (144)
T 2c4n_A           26 EFLHGIMDKGLPLVLLT--NYPSQ---TGQDLANRFATAGVDVPDSVF----YTSSPWIIRAALN---KMQAHSEETVIV   93 (144)
T ss_dssp             HHHHHHHHTTCCEEEEE--SCCSC---CHHHHHHHHHHTTCCCCGGGE----EEHSTHHHHHHHH---HHTCCGGGEEEE
T ss_pred             HHHHHHHHCCCCEEEEE--CCCCC---CHHHHHHHHHHCCCCCCCCEE----CCHHHHHHHHHHH---HHHCCCCCCCCC
T ss_conf             99999997799589992--89989---989997554312467752102----2152577776666---640475335122


Q ss_pred             CCC
Q ss_conf             345
Q gi|254781065|r  274 PDL  276 (352)
Q Consensus       274 ~d~  276 (352)
                      .|.
T Consensus        94 gDd   96 (144)
T 2c4n_A           94 GDN   96 (144)
T ss_dssp             ESC
T ss_pred             CCC
T ss_conf             787


No 98 
>>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} (A:1-238)
Probab=35.13  E-value=30  Score=15.28  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             8999999999972997479997269813
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPL  155 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl  155 (352)
                      -.++.++++.++++++++=|++||+++-
T Consensus        36 ~~~L~~~l~~~~~d~~~~vvvl~~~~~~   63 (238)
T 1mj3_A           36 IEELNQALETFEEDPAVGAIVLTGGEKA   63 (238)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECCSSE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             9999999999976899249999879996


No 99 
>>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} (A:278-412)
Probab=35.09  E-value=30  Score=15.28  Aligned_cols=100  Identities=15%  Similarity=0.253  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC----------------CCCCCC----CHHHHHHHHHHHHCCCCCEEEEEECCEEEEE
Q ss_conf             99999999997299747999726----------------981324----9899999999986199812898743435634
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTG----------------GDPLIL----SHKRLQKVLKTLRYIKHVQILRFHSRVPIVD  188 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSG----------------GDPl~l----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~  188 (352)
                      +.-.+..+|+++||.|..|.-.|                |-+++.    +.+....+++.|.-..+...  -+....+..
T Consensus        11 ~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~~~~~s~--gg~~tl~~~   88 (135)
T 2cb1_A           11 ETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLKAANL--GDARTLLVH   88 (135)
T ss_dssp             HHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEECSCC--SCSSCEEEC
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEEE--CCCCCEEEC
T ss_conf             446667764246985654212333332232212333356673468996899999999963718887667--576623557


Q ss_pred             HHH-----CCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH
Q ss_conf             343-----399999998625993899933699588699999999999
Q gi|254781065|r  189 PQR-----INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL  230 (352)
Q Consensus       189 P~R-----it~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L  230 (352)
                      |.-     .+.+-.....-...-+-+.+-+..|.+|-....+|+.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~gi~~~liRlsvGlEd~edLi~Dl~~Al~~l  135 (135)
T 2cb1_A           89 PWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEAV  135 (135)
T ss_dssp             TTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             73103312899999866979596999972099999999999998319


No 100
>>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (N:)
Probab=34.57  E-value=8  Score=19.37  Aligned_cols=20  Identities=40%  Similarity=0.909  Sum_probs=14.9

Q ss_pred             CCCCEEECCCEEEEEECCCCCCHHHCCCCCC
Q ss_conf             8871452075379997274300000112233
Q gi|254781065|r   86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRRE  116 (352)
Q Consensus        86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~  116 (352)
                      -.||++||-           -.-||-|||..
T Consensus        23 ~~glIrKYg-----------l~~CRqCFre~   42 (50)
T 3jyv_N           23 HTGLVRKYD-----------LNICRQCFREK   42 (50)
T ss_dssp             CSSCCSSCS-----------CSSSSHHHHHH
T ss_pred             CCCEEEECC-----------CHHHHHHHHHH
T ss_conf             865778738-----------42178899987


No 101
>>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:1-131)
Probab=34.48  E-value=31  Score=15.21  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             999999997299747999726981324989999999998619
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      ++.+++..++...  =++++.|||++.+.  ..+++..+++.
T Consensus        84 ~~~i~~~~~~g~~--V~~l~~GDP~~y~~--~~~l~~~~~~~  121 (131)
T 2qbu_A           84 ARMVAAELEDGRD--VAFITLGDPSIYST--FSYLQQRIEDM  121 (131)
T ss_dssp             HHHHHHHHHTTCC--EEEEESBCTTBSCS--HHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCE--EEEEECCCCCCCCC--HHHHHHHHHCC
T ss_conf             9999999867987--99983443211133--01245554325


No 102
>>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica hm-1} PDB: 3bm5_A* (A:55-163)
Probab=34.42  E-value=31  Score=15.20  Aligned_cols=88  Identities=10%  Similarity=-0.033  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHC---CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCE
Q ss_conf             99999999729---974799972698132498999999999861998128987434356343433999999986259938
Q gi|254781065|r  131 TEAALAYIQEK---SQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPV  207 (352)
Q Consensus       131 ~~~~~~Yi~~~---~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~  207 (352)
                      +-...+.++++   ++-.=|--|+|.     ...=-.++.++..++          .-+++|.....+..+.|+.+|-.|
T Consensus         9 ~~~i~~~~~~~~~~~~~~iv~~SsGN-----~g~alA~~a~~~g~~----------~~vv~p~~~~~~k~~~l~~~GA~V   73 (109)
T 2pqm_A            9 FNIVYQAIKDGRLKPGMEIIESTSGN-----TGIALCQAGAVFGYR----------VNIAMPSTMSVERQMIMKAFGAEL   73 (109)
T ss_dssp             HHHHHHHHHHTSSCTTCEEEEECSSH-----HHHHHHHHHHHHTCC----------EEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEEECC-----HHHHHHHHHHHHCCC----------CCCHHHCCCCHHHHHHHHCCCCCC
T ss_conf             99999998658457997899854261-----132689999985135----------201221135667654220357641


Q ss_pred             EEEECCCCHHHCCHHHHHHHHHHHHCCCE
Q ss_conf             99933699588699999999999987989
Q gi|254781065|r  208 YIAIHANHPYEFSEEAIAAISRLANAGII  236 (352)
Q Consensus       208 ~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~  236 (352)
                      .++.+-+..+|   ....|-+...+.|..
T Consensus        74 ~~v~~~~~~~~---~~~~a~~~~~~~~~~   99 (109)
T 2pqm_A           74 ILTEGKKGMPG---AIEEVNKMIKENPGK   99 (109)
T ss_dssp             EEECGGGHHHH---HHHHHHHHHHHSTTT
T ss_pred             EEECCCCCCCC---CCCCCCCCCCCCCCC
T ss_conf             01035566544---322332100003662


No 103
>>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} (A:)
Probab=33.89  E-value=32  Score=15.15  Aligned_cols=27  Identities=7%  Similarity=0.054  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -.++.++++.++++++|+-||+||.+.
T Consensus        38 ~~~l~~al~~~~~d~~v~~viltg~g~   64 (280)
T 1pjh_A           38 YIYLGELLELADRNRDVYFTIIQSSGR   64 (280)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECBTT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999997499976999976998


No 104
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247)
Probab=33.76  E-value=32  Score=15.13  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=72.4

Q ss_pred             HHHHHHHHHC-CCEEEEEEECCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEECCEEEE----EHHHCCHHHHHHHHHCCC
Q ss_conf             9999999729-9747999726981324-989999999998619981289874343563----434339999999862599
Q gi|254781065|r  132 EAALAYIQEK-SQIWEVIFTGGDPLIL-SHKRLQKVLKTLRYIKHVQILRFHSRVPIV----DPQRINPELIQCLKEAGK  205 (352)
Q Consensus       132 ~~~~~Yi~~~-~eI~eVilSGGDPl~l-~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~----~P~Rit~~L~~~l~~~~~  205 (352)
                      ..+.+|+.++ +.-+.|.+=+|++-.. +..+..-+.+.+++-.-...+.......-.    --++....+.+.+.+...
T Consensus         6 ~~a~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T 3l49_A            6 AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGD   85 (141)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTS
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999974999779999267555225699999999998789982453352034787689999999999986124676


Q ss_pred             CEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             38999336995886999999999999879898232798623457889999999999
Q gi|254781065|r  206 PVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTF  261 (352)
Q Consensus       206 ~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L  261 (352)
                      +..+.++      -+..+..+++.|+++|..    -|.+=|++|+...|.......
T Consensus        86 ~~ai~~~------~d~~a~g~~~al~~~g~~----di~ivg~d~~~~~lt~I~~~~  131 (141)
T 3l49_A           86 VGAIWAC------WDVPMIGATQALQAAGRT----DIRTYGVDGSPEFVEMVADPE  131 (141)
T ss_dssp             CCEEEES------SHHHHHHHHHHHHHTTCC----SCEEEEEECCHHHHHHHHCTT
T ss_pred             CCEEEEC------CCHHHHHHHHHHHHHCCC----CCEEEEECCCHHHHHHHHCCC
T ss_conf             7569967------867899999999982999----857999849989999997699


No 105
>>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} (A:)
Probab=33.06  E-value=20  Score=16.60  Aligned_cols=12  Identities=17%  Similarity=0.146  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999861
Q gi|254781065|r  160 KRLQKVLKTLRY  171 (352)
Q Consensus       160 ~~L~~ll~~L~~  171 (352)
                      ++|..++++|.+
T Consensus       142 ~~L~~~i~~Lk~  153 (278)
T 3gk0_A          142 DAVRAACKQLAD  153 (278)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             789999999987


No 106
>>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:61-162)
Probab=32.84  E-value=33  Score=15.03  Aligned_cols=53  Identities=13%  Similarity=0.127  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHHH-HHCCCCCEEEEE
Q ss_conf             899999999997299747999726981-324-----98999999999-861998128987
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLKT-LRYIKHVQILRF  180 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~~-L~~i~hv~~IRi  180 (352)
                      .+.+++..+.|++.|+|.++-..-||. +++     +...+..++.+ |..++.|..++=
T Consensus        22 ~~~~~~~~~~l~~~p~V~~~~~vtG~~D~~l~v~~~d~~~l~~~i~~~l~~~~gv~~~~T   81 (102)
T 2p5v_A           22 KDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDXNAFSHFVLDTLLSHHGVQDAQS   81 (102)
T ss_dssp             TTHHHHHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             113999999987699499853148888899999989999999999999736899759999


No 107
>>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} (A:)
Probab=32.65  E-value=33  Score=15.01  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             699999999999987989823279862345788999999999
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                      +|++=.++++.|.+.|+.+..|.|=    +|+...|.++.++
T Consensus       123 l~~eE~~~l~~l~~~Gv~v~~q~vP----~~~~~~~~~~~~k  160 (163)
T 1ble_A          123 VTEQDIKAFETLSDKGVKLELRQLP----SDASEDFVQILRN  160 (163)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHT
T ss_pred             ECHHHHHHHHHHHHCCCEEEEEECC----CCCHHCHHHHHHH
T ss_conf             0899999999999769879999895----9962069999976


No 108
>>1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-290)
Probab=32.65  E-value=33  Score=15.01  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      ..++.++++.+.++++|+=|||+|..+
T Consensus        66 ~~~l~~al~~~~~d~~v~~viltg~G~   92 (290)
T 1q52_A           66 VDELYRVLDHARMSPDVGVVLLTGNGP   92 (290)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             999999999997499974899956887


No 109
>>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} (A:1-85,A:215-288)
Probab=32.61  E-value=33  Score=15.01  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999997299747999726981324989999999998
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTL  169 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L  169 (352)
                      ...++++.+++. .+.=+|.||..     .....++++.+
T Consensus        25 ~~~e~l~~L~~~-Gi~l~ivTgr~-----~~~~~~ll~~~   58 (159)
T 1nrw_A           25 ENENALRQAQRD-GIEVVVSTGRA-----HFDVXSIFEPL   58 (159)
T ss_dssp             HHHHHHHHHHHT-TCEEEEECSSC-----HHHHHHHHGGG
T ss_pred             HHHHHHHHHHHC-CCEEEEECCCC-----HHHHHHHHHHH
T ss_conf             999999999978-99999997999-----89999999982


No 110
>>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast structural genomics consortium, NESG, protein structure initiative; 2.80A {Pseudomonas putida KT2440} (A:147-296)
Probab=32.55  E-value=20  Score=16.62  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             99999986259938999336995886999999999999879898
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL  237 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v  237 (352)
                      ++.++.+++.+-.-.+.||++|-+....+..+..++....|+.+
T Consensus       105 ~ea~~~a~~~~~k~~~ltH~s~~~~~~~~~~~e~~~~~~~gi~v  148 (150)
T 1xto_A          105 GGXLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEV  148 (150)
T ss_dssp             SSHHHHGGGCCSSEEEEESBCTTCGGGSTTCHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCEEE
T ss_conf             99999998579983999966999834361869998654379099


No 111
>>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:275-457)
Probab=32.30  E-value=34  Score=14.97  Aligned_cols=133  Identities=16%  Similarity=0.110  Sum_probs=88.5

Q ss_pred             CEEEEEEC--CCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             53799972--7430000011223301255556789899999999997299747999726981324989999999998619
Q gi|254781065|r   95 DRILLKLL--HVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus        95 ~rvLl~~t--~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      +|+.++..  +.+.+-+-.|.+...--    ..++.+..++.-+++-..-.+.+-|=.||+.   +.+.+...++.+.+-
T Consensus        20 ~riavis~sGG~~~l~aD~~~~~Gl~l----~~l~~~t~~~L~~~lP~~~~~~NPiD~~~~a---~~~~~~~~l~~~~~d   92 (183)
T 2csu_A           20 NKVAIXTNAGGPGVLTADELDKRGLKL----ATLEEKTIEELRSFLPPXAAVKNPVDXIASA---RGEDYYRTAKLLLQD   92 (183)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHTTTCEE----CCCCHHHHHHHHHHSCTTCEESSEEECCTTC---CHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHCCHHHHCCCCCCCCCCC---CHHHHHHHHHHHHCC
T ss_conf             816999678348899999999869987----7788889987874134123025765567888---979999999999739


Q ss_pred             CCCEEEEEECCEEEEEHHH---CCHHHHHHHHH--CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf             9812898743435634343---39999999862--59938999336995886999999999999879898232
Q gi|254781065|r  173 KHVQILRFHSRVPIVDPQR---INPELIQCLKE--AGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       173 ~hv~~IRi~TR~pv~~P~R---it~~L~~~l~~--~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ  240 (352)
                      |.+..+=+..=.+...|..   .-..+++..++  .+||+.++.--      ...+.++.+.|.++||++...
T Consensus        93 p~vd~v~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~kPi~~~~~g------~~~~~~~~~~l~~~gip~f~~  159 (183)
T 2csu_A           93 PNVDXLIAICVVPTFAGXTLTEHAEGIIRAVKEVNNEKPVLAXFXA------GYVSEKAKELLEKNGIPTYER  159 (183)
T ss_dssp             TTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEEC------TTTTHHHHHHHHTTTCCEESS
T ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC------CCCHHHHHHHHHHCCCCCCCC
T ss_conf             9989899997477656777269999999999984899978999899------865199999998689985799


No 112
>>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} (A:)
Probab=32.21  E-value=34  Score=14.96  Aligned_cols=16  Identities=19%  Similarity=0.239  Sum_probs=7.7

Q ss_pred             HHHHCCCCCEEEEEEC
Q ss_conf             9986199812898743
Q gi|254781065|r  167 KTLRYIKHVQILRFHS  182 (352)
Q Consensus       167 ~~L~~i~hv~~IRi~T  182 (352)
                      ..+..||++.-+-||-
T Consensus       201 ~~i~~ip~i~ElnIGH  216 (243)
T 1m5w_A          201 KAIAAIPEMHELNIGH  216 (243)
T ss_dssp             HHHHTCTTEEEEEECH
T ss_pred             HHHHCCCCCEEEECCH
T ss_conf             9984389976984579


No 113
>>1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} (A:138-245)
Probab=31.98  E-value=34  Score=14.94  Aligned_cols=81  Identities=15%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHH
Q ss_conf             79997269813249899999999986199812898743435634343399999998625993899933699588699999
Q gi|254781065|r  145 WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAI  224 (352)
Q Consensus       145 ~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~  224 (352)
                      .=|--|.|     +...=-.+..++..++          .-+++|....++..++++.++-.+..+--.-++....+...
T Consensus        26 ~vv~aSsG-----N~g~alA~~a~~~G~~----------~~v~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~   90 (108)
T 1jbq_A           26 TIIEPTSG-----NTGIGLALAAAVRGYR----------CIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVG   90 (108)
T ss_dssp             EEEEECSS-----HHHHHHHHHHHHHTCE----------EEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHH
T ss_pred             EEEEECCC-----HHHHHHHHHHHHCCCC----------EEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf             99997967-----9999999999981996----------79995576628999999962977999168766435799999


Q ss_pred             HHHHHHHHCCCE-EEEC
Q ss_conf             999999987989-8232
Q gi|254781065|r  225 AAISRLANAGII-LLSQ  240 (352)
Q Consensus       225 ~A~~~L~~~Gv~-v~nQ  240 (352)
                      +|.+...+.|.. +.||
T Consensus        91 ~a~~~a~~~~~~~~~~q  107 (108)
T 1jbq_A           91 VAWRLKNEIPNSHILDQ  107 (108)
T ss_dssp             HHHHHHHHSTTEECCCT
T ss_pred             HHHHHHHHCCCCCCCCC
T ss_conf             99999985499560688


No 114
>>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* (A:1-211)
Probab=31.53  E-value=35  Score=14.89  Aligned_cols=27  Identities=11%  Similarity=0.263  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -+++.++++.+.++++++=|||+|..+
T Consensus        38 ~~~l~~~~~~~~~d~~v~~vvl~g~g~   64 (211)
T 2j5i_A           38 NREMIDVLETLEQDPAAGVLVLTGAGE   64 (211)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999997399952999964543


No 115
>>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} (A:1-115,A:225-301)
Probab=30.90  E-value=35  Score=14.81  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=12.8

Q ss_pred             CHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             95886999999999999879898
Q gi|254781065|r  215 HPYEFSEEAIAAISRLANAGIIL  237 (352)
Q Consensus       215 Hp~Elt~~~~~A~~~L~~~Gv~v  237 (352)
                      +-.|+.|++.+++++|+++|+.+
T Consensus        42 ~~~~i~~~~~~~l~~l~~~g~~i   64 (192)
T 2b30_A           42 KDIKVPSENIDAIKEAIEKGYMV   64 (192)
T ss_dssp             TTTCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             89934999999999999789999


No 116
>>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} (A:1-284)
Probab=30.68  E-value=36  Score=14.79  Aligned_cols=126  Identities=15%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC--------CCCCC------CCH-------HHHHHHHHHHHCCCCCEE---------
Q ss_conf             899999999997299747999726--------98132------498-------999999999861998128---------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG--------GDPLI------LSH-------KRLQKVLKTLRYIKHVQI---------  177 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG--------GDPl~------l~~-------~~L~~ll~~L~~i~hv~~---------  177 (352)
                      -.++.++++.++.+++++=|||||        ||.-.      -..       ..+..++..+...+-.-+         
T Consensus        37 ~~~l~~al~~~~~d~~~~~viitg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~G  116 (284)
T 1wdk_A           37 LNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALG  116 (284)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEET
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             99999999999758896699997889961527388979735478867887767899999999984989899997874318


Q ss_pred             ----------EEEECCEEE-EEHHH-C--------CHHHHHHH--------HHCCCCE--------EEEECCCCHHHCCH
Q ss_conf             ----------987434356-34343-3--------99999998--------6259938--------99933699588699
Q gi|254781065|r  178 ----------LRFHSRVPI-VDPQR-I--------NPELIQCL--------KEAGKPV--------YIAIHANHPYEFSE  221 (352)
Q Consensus       178 ----------IRi~TR~pv-~~P~R-i--------t~~L~~~l--------~~~~~~~--------~iv~H~NHp~Elt~  221 (352)
                                +||.+.... .+|+- +        +..|.+.+        --.++++        -+|..+--+.|+..
T Consensus       117 gG~~lalacD~ria~~~a~~~~pe~~~G~~p~~~~~~~l~r~~g~~~a~~~l~~g~~~~a~eA~~~GlV~~vv~~~el~~  196 (284)
T 1wdk_A          117 GGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGA  196 (284)
T ss_dssp             HHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHH
T ss_pred             HHHHHHHHCCEEEECCCCEEECCCEECCCCCCCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             99999996899998199799733030001258876555201057333444412231045999985226661388889999


Q ss_pred             HHHHHHHHHHHCCCEEE--ECHHHHHCCCCCHHH
Q ss_conf             99999999998798982--327986234578899
Q gi|254781065|r  222 EAIAAISRLANAGIILL--SQSVLLKGINDDPEI  253 (352)
Q Consensus       222 ~~~~A~~~L~~~Gv~v~--nQsVLLkgVND~~~~  253 (352)
                      ++.+-++.+.+......  ....+-++...+.+.
T Consensus       197 ~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~  230 (284)
T 1wdk_A          197 AALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQ  230 (284)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHH
T ss_conf             9999999985299864443330355544210245


No 117
>>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (B:238-388)
Probab=30.42  E-value=36  Score=14.76  Aligned_cols=45  Identities=7%  Similarity=0.063  Sum_probs=19.9

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             989999999999729974799972698132498999999999861
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +.+.+.++++.+.++|+++-|++.++=+..........++..+.+
T Consensus        57 ~~~~~~~~l~~~~~d~~vd~i~v~~~~~~~~~~~~~~~i~~~~~~  101 (151)
T 2nu8_B           57 TKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAE  101 (151)
T ss_dssp             CHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             799999999999759987689999856601089999999999997


No 118
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
Probab=30.28  E-value=25  Score=15.94  Aligned_cols=18  Identities=28%  Similarity=0.198  Sum_probs=8.1

Q ss_pred             CCHHHHHHHHHHHHCCCE
Q ss_conf             699999999999987989
Q gi|254781065|r  219 FSEEAIAAISRLANAGII  236 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~  236 (352)
                      .-|++.+++++|++.|+.
T Consensus        22 ~~~~~~e~l~~l~~~G~~   39 (154)
T 3epr_A           22 RIPAGERFIERLQEKGIP   39 (154)
T ss_dssp             ECHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHCCCC
T ss_conf             282599999999987998


No 119
>>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A (C:)
Probab=29.98  E-value=37  Score=14.71  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             699999999999987989823279862345788999999999
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                      +|++=.++++.|.+.|+.+..|.+=    +|+...+.++.++
T Consensus       125 l~~ee~e~lk~l~~~Gv~i~~Q~vP----~~~~~~~~~~lkk  162 (165)
T 1vsq_C          125 VDEKDIEAFKKLNARGIELEVRKVS----TDPKLKMMDLISK  162 (165)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHH
T ss_conf             3999999999999769879999896----9970379999987


No 120
>>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* (A:1-88,A:193-246)
Probab=29.85  E-value=37  Score=14.70  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=12.2

Q ss_pred             CCHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             995886999999999999879898
Q gi|254781065|r  214 NHPYEFSEEAIAAISRLANAGIIL  237 (352)
Q Consensus       214 NHp~Elt~~~~~A~~~L~~~Gv~v  237 (352)
                      ++-..+++++.+|+++|++.|+.+
T Consensus        17 ~~~~~i~~~~~~~L~~l~~kGv~i   40 (142)
T 3f9r_A           17 PPRLCQTDEMRALIKRARGAGFCV   40 (142)
T ss_dssp             STTSCCCHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             899978999999999998489999


No 121
>>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} (A:476-580)
Probab=29.44  E-value=37  Score=14.65  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=25.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCEEEE---ECC-CCCCCE
Q ss_conf             1869999999999998288865410663---178-888823
Q gi|254781065|r  284 RLTIEEGQKIVASLKEKISGLCQPFYIL---DLP-GGYGKV  320 (352)
Q Consensus       284 ~v~~~~~~~i~~~l~~~lsG~~~P~~v~---d~p-~~~GKv  320 (352)
                      ..+-....++.+.++..++.|.+|.+++   ++| ...||+
T Consensus        53 ~~~~~~~~~~~~~~~~~l~~~~~P~~~~~v~~lP~t~sgKi   93 (105)
T 3etc_A           53 TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKI   93 (105)
T ss_dssp             CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf             97878999999999856888758619999798787988773


No 122
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:54-150)
Probab=29.31  E-value=38  Score=14.63  Aligned_cols=56  Identities=14%  Similarity=0.210  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHH-HHHCCCCCEEEEEEC
Q ss_conf             9899999999997299747999726981-324-----9899999999-986199812898743
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLK-TLRYIKHVQILRFHS  182 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~-~L~~i~hv~~IRi~T  182 (352)
                      +...+++..+.+++.|+|.++-..-||. +++     +.+.|..++. .+..+|+|..+.-+.
T Consensus        21 ~~~~~~~~~~~l~~~~~v~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~~i~~~~gv~~~~t~i   83 (97)
T 2pn6_A           21 GKNYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQV   83 (97)
T ss_dssp             CTTHHHHHHHHHHTSTTEEEEEECSSSCSEEEEEEESSHHHHHHHTHHHHTTCTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             067789999999848642666641589888999997999999999999973899973899999


No 123
>>2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str} (A:)
Probab=29.06  E-value=38  Score=14.60  Aligned_cols=52  Identities=19%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHH-HHHHCCCCCEEEE
Q ss_conf             89999999999729974799972698132------4989999999-9986199812898
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVL-KTLRYIKHVQILR  179 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll-~~L~~i~hv~~IR  179 (352)
                      ...+++..+.|++.|+|.++-..-|+.=.      -+.+.|..++ +.|..+|.|...+
T Consensus        12 ~~~~~~~~~~l~~~peV~~~~~vtG~~D~i~~v~~~d~~~l~~~i~~~l~~~~gV~~~~   70 (83)
T 2zbc_A           12 AGGEDEVFERLKSXSEVTEVHVVYGVYDIVVKVEADSXDKLKDFVTNTIRKLPKVRSTL   70 (83)
T ss_dssp             TTCHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEE
T ss_pred             CCCHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             89999999999769772489991087629999999999999999999872599983699


No 124
>>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} (A:1-199)
Probab=29.06  E-value=38  Score=14.60  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------H---------HHHHHHHHHHHCCCCCE
Q ss_conf             8999999999972997479997269813249--------8---------99999999986199812
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS--------H---------KRLQKVLKTLRYIKHVQ  176 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~--------~---------~~L~~ll~~L~~i~hv~  176 (352)
                      -.++.++++.++++++++=|++||+.+.-.+        .         .....++..+...|-.-
T Consensus        32 ~~~l~~~l~~~~~d~~~~vvvl~g~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~   97 (199)
T 2ej5_A           32 NAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPV   97 (199)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             999999999997499933999733432200102288864200012566641126778888529848


No 125
>>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} (A:1-230)
Probab=28.98  E-value=35  Score=14.82  Aligned_cols=53  Identities=13%  Similarity=0.028  Sum_probs=31.9

Q ss_pred             CCCEEECCCEEEEEECCC-CCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             871452075379997274-300000112233012555567898999999999972997479997269
Q gi|254781065|r   87 KGIVHRYPDRILLKLLHV-CPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus        87 pgl~hkY~~rvLl~~t~~-C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      +.+.-...+.++.++-++ ...|        -. +  ..  -.+++.++++.++++++++=|||+|+
T Consensus        33 ~~i~~~~~~~va~i~l~~p~~~N--------a~-~--~~--~~~~l~~~l~~~~~d~~v~~vil~g~   86 (230)
T 2vx2_A           33 RPTSARQLDGIRNIVLSNPKKRN--------TL-S--LA--MLKSLQSDILHDADSNDLKVIIISAE   86 (230)
T ss_dssp             CSEEEEEETTEEEEEECCGGGTT--------CC-C--HH--HHHHHHHHHHTTTTCTTCCEEEEEES
T ss_pred             CCEEEEEECCEEEEEECCCCCCC--------CC-C--HH--HHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             64267731998999974778679--------99-9--99--99999999999852999669999668


No 126
>>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} (A:39-143)
Probab=28.86  E-value=38  Score=14.58  Aligned_cols=57  Identities=12%  Similarity=0.071  Sum_probs=40.4

Q ss_pred             ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf             434356343433999999986259938999336995886999999999999879898232
Q gi|254781065|r  181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ  240 (352)
                      |-+.-++.|.-..++..+.++.++-.|.++.+-.   ...+....|-+-..+.|....||
T Consensus        47 G~~~~ivvp~~~~~~k~~~l~~~GA~V~~v~~~~---~~~~~~~~a~~~~~~~g~~~~~~  103 (105)
T 1y7l_A           47 GYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK---GMKGAIAKAEEIVASDPSRYVML  103 (105)
T ss_dssp             TCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGG---HHHHHHHHHHHHHHHCTTTEECC
T ss_pred             CCCCCEEEHHHHHHHHHHHHHHCCCCEEECCCCC---CCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             4554111012345777766650476148406665---64115666410002104655466


No 127
>>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D (A:)
Probab=28.21  E-value=39  Score=14.50  Aligned_cols=108  Identities=18%  Similarity=0.090  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC--------CCCCCCC----HH-------HHHHHHHHHHCCCCC-------------
Q ss_conf             899999999997299747999726--------9813249----89-------999999998619981-------------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG--------GDPLILS----HK-------RLQKVLKTLRYIKHV-------------  175 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG--------GDPl~l~----~~-------~L~~ll~~L~~i~hv-------------  175 (352)
                      -+++.++++.++++++++=|||||        ||.-.+.    ..       .+..++..+...|-.             
T Consensus        53 ~~~l~~al~~~~~~~~v~~vvltg~g~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~p~Iaav~G~a~GgG  132 (263)
T 2j5g_A           53 HREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS  132 (263)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEECSCG
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCHHHHHCCCHHHHHHH
T ss_conf             99999999999729996199986245431111100001333233322012221002222023466034302211444455


Q ss_pred             ------EEEEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCCCE--------EEEECCCCHHHCCHHH
Q ss_conf             ------289874343563-434-----------------33999999986259938--------9993369958869999
Q gi|254781065|r  176 ------QILRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGKPV--------YIAIHANHPYEFSEEA  223 (352)
Q Consensus       176 ------~~IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~~~--------~iv~H~NHp~Elt~~~  223 (352)
                            -.+||.++-..+ .|+                 ++.......+--.+..+        -++...--+.|+.+++
T Consensus       133 ~~lal~~D~ria~~~~~f~~p~~~~g~~p~~g~~~~l~~~~g~~~a~~~l~~g~~~~a~~A~~~Glv~~vv~~~~l~~~a  212 (263)
T 2j5g_A          133 EYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERA  212 (263)
T ss_dssp             GGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf             66640035556454333110233333222222222222233321024331023200000002152788963742899999


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999998798
Q gi|254781065|r  224 IAAISRLANAGI  235 (352)
Q Consensus       224 ~~A~~~L~~~Gv  235 (352)
                      .+..++|.+.+-
T Consensus       213 ~~~a~~la~~~~  224 (263)
T 2j5g_A          213 WEIARTLAKQPT  224 (263)
T ss_dssp             HHHHHHHHTSCH
T ss_pred             HHHHHHHHCCCH
T ss_conf             999999985899


No 128
>>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} (A:1-119,A:270-304)
Probab=28.15  E-value=35  Score=14.84  Aligned_cols=126  Identities=13%  Similarity=0.035  Sum_probs=69.3

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCEEEEE---HHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf             999999986199812898743435634---34339999999862599389993369958869999999999998798982
Q gi|254781065|r  162 LQKVLKTLRYIKHVQILRFHSRVPIVD---PQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILL  238 (352)
Q Consensus       162 L~~ll~~L~~i~hv~~IRi~TR~pv~~---P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~  238 (352)
                      =..++..|.+.++++.+-+..+.|-..   ..+.+....+.+... . +.+++..      +..-.+.+.+..++|+.++
T Consensus        15 G~~~~~~l~~~~~~eiVav~d~~~~~~~~~~~~~~~~~~~~~~~~-d-~~~i~t~------~~~h~~~~~~al~aG~~Vl   86 (154)
T 1f06_A           15 GRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDV-D-VLFLCMG------SATDIPEQAPKFAQFACTV   86 (154)
T ss_dssp             HHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTC-S-EEEECSC------TTTHHHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCHHHHHHCCCC-C-EEEECCC------CCCCHHHHHHHHHCCCCEE
T ss_conf             999999997399979999997776757788860306699745589-9-9998998------6267999999998699899


Q ss_pred             ECHHHHHCCCCCHHHHHHHHHHHHHCCCE--EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             32798623457889999999999986982--423011345765210118699999999999982888
Q gi|254781065|r  239 SQSVLLKGINDDPEILANLMRTFVELRIK--PYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISG  303 (352)
Q Consensus       239 nQsVLLkgVND~~~~l~~L~~~L~~~gV~--PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG  303 (352)
                      ...++-..+-|   ....|.+.--+.|+.  +-|-|.+|-....     .++-|+.-.+--++.-||
T Consensus        87 vEKP~a~s~~E---~a~~l~~aa~~~gv~~~v~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  145 (154)
T 1f06_A           87 DTYDNHRDIPR---HRQVMNEAATAAGNVALVSTGWNPDFTASS-----QIAFGRAAHRMKQQGQSG  145 (154)
T ss_dssp             CCCCCGGGHHH---HHHHHHHHHHHHTCEEECSCSBHHHHHHHH-----HHHHHHHHHHHHHTTCCE
T ss_pred             ECCCCCCCCHH---HHHHHHHHHHHCCCEEEEECCCCCCHHHHH-----HHHHHHHHHHHHHCCCCC
T ss_conf             88875343178---999999999973988999578494168999-----999999998887546998


No 129
>>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231)
Probab=28.05  E-value=36  Score=14.74  Aligned_cols=41  Identities=12%  Similarity=0.022  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             99999999997299747999726981324989999999998619981
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHV  175 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv  175 (352)
                      +...++++.++++ .+.=++.||.     +......+++++.--..+
T Consensus        23 ~~~~e~l~~l~~~-Gi~~~i~Tgr-----~~~~~~~~l~~~~~~~~~   63 (162)
T 1wr8_A           23 EKALEAIRRAESL-GIPIMLVTGN-----TVQFAEAASILIGTSGPV   63 (162)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEECSS-----CHHHHHHHHHHHTCCSCE
T ss_pred             HHHHHHHHHHHHC-CCEEEEEECC-----CCCCCHHHHHHCCCCCCE
T ss_conf             9999999999857-9909999357-----500102245532776752


No 130
>>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, enzyme kinetics, X-RAY diffraction; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* (A:38-146)
Probab=28.01  E-value=39  Score=14.48  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=40.8

Q ss_pred             CCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH
Q ss_conf             343563434339999999862599389993369958869999999999998798982327
Q gi|254781065|r  182 SRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS  241 (352)
Q Consensus       182 TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs  241 (352)
                      -+.-+++|.....+..+.++.++-.+.++.+-.-..   +....|-+-..+.|....||-
T Consensus        48 ~~~~iv~p~~~~~~k~~~l~~~Ga~V~~v~~~~~~~---~~~~~a~~la~~~g~~~~~~f  104 (109)
T 2v03_A           48 YRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME---GARDLALEMANRGEGKLLDQF  104 (109)
T ss_dssp             CEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHH---HHHHHHHHHHHTTSCEECCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHH---HHHHHHHHHCCCCCCCCCCCC
T ss_conf             870452125512676699998589763000353214---678876420245543455543


No 131
>>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} (A:126-227)
Probab=27.84  E-value=40  Score=14.46  Aligned_cols=50  Identities=24%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCH--HHCCHHHHHHHHH-HHHCCCEEEECHHH
Q ss_conf             99999986259938999336995--8869999999999-99879898232798
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHP--YEFSEEAIAAISR-LANAGIILLSQSVL  243 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp--~Elt~~~~~A~~~-L~~~Gv~v~nQsVL  243 (352)
                      -|+...|.+.++++.++.--+++  +.++++..+.+.+ +++.|+.+..++-+
T Consensus        34 lE~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v   86 (102)
T 3klj_A           34 IELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF   86 (102)
T ss_dssp             HHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCG
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCEE
T ss_conf             78999999629927999961531123357899999999876277599958799


No 132
>>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} (A:)
Probab=27.44  E-value=40  Score=14.41  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999999729974799972698
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      -.++.++++.++++++++=||+||..
T Consensus        33 ~~~l~~~l~~~~~d~~~~~vii~g~g   58 (260)
T 1sg4_A           33 LTELVISLEKLENDKSFRGVILTSDR   58 (260)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             99999999999739995699996576


No 133
>>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix K1} (A:124-225)
Probab=27.43  E-value=40  Score=14.41  Aligned_cols=57  Identities=14%  Similarity=0.035  Sum_probs=41.4

Q ss_pred             ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf             434356343433999999986259938999336995886999999999999879898232
Q gi|254781065|r  181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ  240 (352)
                      |-+.-++.|..+..+..+.++.++-.|.++..-..   ..+....|.+-..+.|....||
T Consensus        45 g~~~~i~~p~~~~~~k~~~l~~~GA~V~~v~~~~~---~~~~~~~a~~~a~~~g~~~~~q  101 (102)
T 1wkv_A           45 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPS---TVHLLPRVMKDSKNEGFVHVNQ  101 (102)
T ss_dssp             TCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSS---SGGGHHHHHHHHHHHCCEECCT
T ss_pred             CCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCCH---HHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99689998300013455566405862366487413---5788998765302457542223


No 134
>>3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} (A:1-265)
Probab=27.19  E-value=41  Score=14.38  Aligned_cols=107  Identities=11%  Similarity=0.049  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEE-CCCC-------CC-CCH------------HHHHHHHHHHHCCCCCE----------
Q ss_conf             89999999999729974799972-6981-------32-498------------99999999986199812----------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFT-GGDP-------LI-LSH------------KRLQKVLKTLRYIKHVQ----------  176 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilS-GGDP-------l~-l~~------------~~L~~ll~~L~~i~hv~----------  176 (352)
                      .+++.++++.+.++++++=|||+ ||+-       +. +..            .....+...+..+|-.-          
T Consensus        56 ~~~l~~~~~~~~~d~~~~~vVl~~g~~~~Fs~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaav~G~a~G  135 (265)
T 3h02_A           56 VKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIG  135 (265)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEC
T ss_conf             99999999998629885179995798830004510777642254320134543100367887623588289995070442


Q ss_pred             ---------EEEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCH
Q ss_conf             ---------89874343563-434-----------------3399999998625993--------899933699588699
Q gi|254781065|r  177 ---------ILRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSE  221 (352)
Q Consensus       177 ---------~IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~  221 (352)
                               .+||.+..-.+ .|+                 ++-......+--.++.        .-+|..+--+.|+.+
T Consensus       136 gG~~lal~~D~~ia~~~a~f~~~~~~~G~~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~  215 (265)
T 3h02_A          136 GGHVLHXXCDLTIAAENAIFGQTGPKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVPLADLEK  215 (265)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHH
T ss_pred             CCCCEEECCCEEEECCCCEEECHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHH
T ss_conf             64310114541241698689871330071457624556777707999999997397044999997897888655676536


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999999879
Q gi|254781065|r  222 EAIAAISRLANAG  234 (352)
Q Consensus       222 ~~~~A~~~L~~~G  234 (352)
                      ++.+-.+++.+..
T Consensus       216 ~a~~~a~~~~~~~  228 (265)
T 3h02_A          216 ETVRWCREXLQNS  228 (265)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHCCCC
T ss_conf             7888876532588


No 135
>>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290)
Probab=26.89  E-value=41  Score=14.35  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999999729974799972698132498999999999861
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +...++++++++. .+.=++.||.     +......++..+.-
T Consensus        26 ~~~~e~l~~l~~~-Gi~~~ivTgr-----~~~~~~~~l~~lgl   62 (175)
T 3dnp_A           26 QATKDAIEYVKKK-GIYVTLVTNR-----HFRSAQKIAKSLKL   62 (175)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEBCSS-----CHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCC-----CHHHHHHHHHHHCC
T ss_conf             9999999999978-9999998999-----88999999998099


No 136
>>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264)
Probab=26.88  E-value=36  Score=14.75  Aligned_cols=20  Identities=15%  Similarity=0.129  Sum_probs=10.9

Q ss_pred             HCCHHHHHHHHHHHHCCCEE
Q ss_conf             86999999999999879898
Q gi|254781065|r  218 EFSEEAIAAISRLANAGIIL  237 (352)
Q Consensus       218 Elt~~~~~A~~~L~~~Gv~v  237 (352)
                      +..|.+.+++++|+++|+.+
T Consensus        21 ~~~p~~~e~l~~L~~~Gi~~   40 (154)
T 1yv9_A           21 EPIPAGKRFVERLQEKDLPF   40 (154)
T ss_dssp             EECHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCHHHHHHHHHHCCCCE
T ss_conf             83813999999999779978


No 137
>>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} (A:)
Probab=26.72  E-value=42  Score=14.33  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=29.2

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             699999999999987989823279862345788999999999
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                      +|++=.++++.|.+.|+.+.-|.+=    +|....|.++.++
T Consensus       122 l~~ee~~~lk~l~~~Gv~v~~q~vP----~~~~~~l~~~lkk  159 (164)
T 1nrz_A          122 LDPQDIQAFRELDKLGVKLDLRVVA----SDPSVNILDKINE  159 (164)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSST----TSCCBCHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHH
T ss_conf             1999999999999779879999895----9970269999977


No 138
>>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} (A:266-342)
Probab=26.59  E-value=27  Score=15.64  Aligned_cols=18  Identities=0%  Similarity=-0.007  Sum_probs=14.4

Q ss_pred             HHCCCEEEEEEECCCCCC
Q ss_conf             729974799972698132
Q gi|254781065|r  139 QEKSQIWEVIFTGGDPLI  156 (352)
Q Consensus       139 ~~~~eI~eVilSGGDPl~  156 (352)
                      +++||..-+|+.||+|-.
T Consensus        17 ~~nPd~T~LLIaGG~p~~   34 (77)
T 2oaj_A           17 ENNPEYTSLLISHKSISR   34 (77)
T ss_dssp             CSSTTEEEEEEEEECSTT
T ss_pred             CCCCCCCEEEEECCCCCC
T ss_conf             479984289971487744


No 139
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306)
Probab=26.48  E-value=42  Score=14.30  Aligned_cols=77  Identities=18%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             HCCHHHHHHHHHCCCCEEEEECCCC--HHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             3399999998625993899933699--58869999999999998798982327986234578899999999999869824
Q gi|254781065|r  191 RINPELIQCLKEAGKPVYIAIHANH--PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKP  268 (352)
Q Consensus       191 Rit~~L~~~l~~~~~~~~iv~H~NH--p~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~P  268 (352)
                      .++++-++-+.+.-+.++.-..-+.  -.++.|.+.+.+++|++.|+++.-=|      |.+......+.++|-..|+..
T Consensus         8 ~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~ivT------n~~~~~~~~~~~~L~~~Gl~~   81 (166)
T 2oyc_A            8 RLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVS------NNSRRARPELALRFARLGFGG   81 (166)
T ss_dssp             ECCHHHHHHHHHHCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEE------CCCSSCHHHHHHHHHHTTCCS
T ss_pred             CCCHHHHHHHHHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHHCCCCC
T ss_conf             28987899999679999996988128899168109999999997799889995------899999999999987437764


Q ss_pred             EEEEC
Q ss_conf             23011
Q gi|254781065|r  269 YYLHH  273 (352)
Q Consensus       269 YYl~~  273 (352)
                      |.=..
T Consensus        82 ~fd~i   86 (166)
T 2oyc_A           82 LRAEQ   86 (166)
T ss_dssp             CCGGG
T ss_pred             CCHHH
T ss_conf             32112


No 140
>>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} (A:1-221)
Probab=26.21  E-value=42  Score=14.26  Aligned_cols=105  Identities=10%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCC------------------CCHHHHHHHHHHHHCCCCCE--------------
Q ss_conf             9999999999729974799972698132------------------49899999999986199812--------------
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLI------------------LSHKRLQKVLKTLRYIKHVQ--------------  176 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~------------------l~~~~L~~ll~~L~~i~hv~--------------  176 (352)
                      +++.++++.+.++++++=||++|+.+-.                  -.......++..+...|-.-              
T Consensus        34 ~~l~~~l~~~~~~~~~~~vv~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~Iaav~G~a~ggG~~  113 (221)
T 1ef8_A           34 DDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFE  113 (221)
T ss_dssp             HHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHH
T ss_conf             99999999861799769999888888605479783533556621677999999999999978999999976812222564


Q ss_pred             -----EEEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHHHHH
Q ss_conf             -----89874343563-434-----------------3399999998625993--------8999336995886999999
Q gi|254781065|r  177 -----ILRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEEAIA  225 (352)
Q Consensus       177 -----~IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~~~~  225 (352)
                           .+||.|.--.+ .|+                 ++.......+--.+.+        .-++..+--+.|+.+++.+
T Consensus       114 lala~D~~ia~~~a~f~~p~~~~g~~p~~~~~~~~~r~~g~~~a~~~~~~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  193 (221)
T 1ef8_A          114 MIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQ  193 (221)
T ss_dssp             HHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHH
T ss_pred             HHHCCCEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHH
T ss_conf             67425568873776544200356889882079999999779999999986998959999876996687484789999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999987
Q gi|254781065|r  226 AISRLANA  233 (352)
Q Consensus       226 A~~~L~~~  233 (352)
                      -.+++.+.
T Consensus       194 ~a~~l~~~  201 (221)
T 1ef8_A          194 MAHHISEK  201 (221)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHCC
T ss_conf             99999847


No 141
>>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} (A:)
Probab=25.84  E-value=43  Score=14.22  Aligned_cols=108  Identities=13%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------------------HHHHHHHHHHHHCCCC-------------
Q ss_conf             8999999999972997479997269813249--------------------8999999999861998-------------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS--------------------HKRLQKVLKTLRYIKH-------------  174 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~--------------------~~~L~~ll~~L~~i~h-------------  174 (352)
                      -.++.++++.+.++++++=||++|+.+-..+                    ...+..+...+...|-             
T Consensus        29 ~~~l~~al~~~~~d~~v~~vvi~~~~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~Gg  108 (250)
T 2a7k_A           29 ETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGM  108 (250)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf             99999999999739993399997414533322334332223332333101233321123331012222343202345454


Q ss_pred             ------CEEEEEECCEEEE-EHHHC--------CHHHHHHHH--------HCCCC--------EEEEECCCCHHHCCHHH
Q ss_conf             ------1289874343563-43433--------999999986--------25993--------89993369958869999
Q gi|254781065|r  175 ------VQILRFHSRVPIV-DPQRI--------NPELIQCLK--------EAGKP--------VYIAIHANHPYEFSEEA  223 (352)
Q Consensus       175 ------v~~IRi~TR~pv~-~P~Ri--------t~~L~~~l~--------~~~~~--------~~iv~H~NHp~Elt~~~  223 (352)
                            --.+||.|....+ +|+..        ...+...+.        -.++.        .-++.++-.+.|+.+.+
T Consensus       109 G~~lal~~D~ria~~~a~f~~p~~~~g~~~~~~~~~l~~~ig~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~l~~~a  188 (250)
T 2a7k_A          109 GFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAA  188 (250)
T ss_dssp             HHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             32410124312112334222223333333322222332233211232100357610799999854444322222222210


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999998798
Q gi|254781065|r  224 IAAISRLANAGI  235 (352)
Q Consensus       224 ~~A~~~L~~~Gv  235 (352)
                      .+..+.+.+...
T Consensus       189 ~~~a~~~~~~~~  200 (250)
T 2a7k_A          189 ITQAHVMASYPA  200 (250)
T ss_dssp             HHHHHHHHTSCH
T ss_pred             HHHHHHHHCCCH
T ss_conf             357777631339


No 142
>>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} (A:445-549)
Probab=25.36  E-value=35  Score=14.86  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHCCCCCCCEEEE---ECC-CCCCCE
Q ss_conf             999999998288865410663---178-888823
Q gi|254781065|r  291 QKIVASLKEKISGLCQPFYIL---DLP-GGYGKV  320 (352)
Q Consensus       291 ~~i~~~l~~~lsG~~~P~~v~---d~p-~~~GKv  320 (352)
                      ..|.+.++++++.+.+|+++.   ++| ...||+
T Consensus        54 ~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi   87 (105)
T 3g7s_A           54 EDIIEWVRERISGYKRVREVEFVEELPRTASGKL   87 (105)
T ss_dssp             HHHHHHHHTTCC-----CCCCEEEECC-------
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             9999999976888888658999798787988673


No 143
>>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile 630} (A:)
Probab=25.34  E-value=44  Score=14.16  Aligned_cols=109  Identities=16%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHH
Q ss_conf             9899999999997299747999726-----98132498999999999861998128987434356343433999999986
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTG-----GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLK  201 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSG-----GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~  201 (352)
                      +.+++...+.+++++..-.-+|+|=     |.-.-.++..-.+++.++.+...+..|-|--    ..++.+-.++.+..+
T Consensus        61 ~~~~i~~~i~~lr~~~~~~PiI~T~R~~~eGG~~~~s~~~~~~~l~~~~~~~~~d~iDiEl----~~~~~~~~~l~~~~~  136 (258)
T 3js3_A           61 NIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVEL----FMGDEVIDEVVNFAH  136 (258)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTSCCSEEEEEG----GGCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HCCHHHHHHHHHHHH
T ss_conf             8999999999999736898789997272208988899899999999999808941258887----553899999999887


Q ss_pred             HCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             25993899933699588699999999999987989823
Q gi|254781065|r  202 EAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLS  239 (352)
Q Consensus       202 ~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~n  239 (352)
                      +.+..+.+..|....---.++..+.+.++++.|.-+.-
T Consensus       137 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivK  174 (258)
T 3js3_A          137 KKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPK  174 (258)
T ss_dssp             HTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf             55987999954699998999999999999974899589


No 144
>>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} (A:399-501)
Probab=24.91  E-value=45  Score=14.10  Aligned_cols=26  Identities=12%  Similarity=0.086  Sum_probs=15.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             69999999999998288865410663
Q gi|254781065|r  286 TIEEGQKIVASLKEKISGLCQPFYIL  311 (352)
Q Consensus       286 ~~~~~~~i~~~l~~~lsG~~~P~~v~  311 (352)
                      +-....+|...++..++.+.+|+++.
T Consensus        50 ~~~~~~~i~~~~~~~l~~~~~P~~~~   75 (103)
T 3ipl_A           50 SDISKAQLIAYLSKHLAKYKVPKHFE   75 (103)
T ss_dssp             SCCCHHHHHHHHHHHSCGGGSCSEEE
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             99999999999985298567964899


No 145
>>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* (A:44-148)
Probab=24.87  E-value=45  Score=14.10  Aligned_cols=57  Identities=16%  Similarity=0.098  Sum_probs=39.7

Q ss_pred             ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEE-EEC
Q ss_conf             434356343433999999986259938999336995886999999999999879898-232
Q gi|254781065|r  181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL-LSQ  240 (352)
Q Consensus       181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v-~nQ  240 (352)
                      |-+.-+++|....++..+.++.++-.|+++..-.   -+++....|-+...+.|..+ .||
T Consensus        47 g~~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~---~~~~~~~~a~~~a~e~g~~~~~~q  104 (105)
T 2q3b_A           47 GYRCVLTMPETMSLERRMLLRAYGAELILTPGAD---GMSGAIAKAEELAKTDQRYFVPQQ  104 (105)
T ss_dssp             TCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGG---HHHHHHHHHHHHHHHCTTEECCCT
T ss_pred             CCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             9984685457578888347550576511146422---212110112222223344100246


No 146
>>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A (A:)
Probab=24.67  E-value=45  Score=14.07  Aligned_cols=107  Identities=17%  Similarity=0.124  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-----------------HHHHHHHHHHHHCCCCCE--------------
Q ss_conf             8999999999972997479997269813249-----------------899999999986199812--------------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS-----------------HKRLQKVLKTLRYIKHVQ--------------  176 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~-----------------~~~L~~ll~~L~~i~hv~--------------  176 (352)
                      -.++.++++.++++++++=||++||+....+                 ...+..+...+...|-+-              
T Consensus        29 ~~~l~~~l~~~~~~~~~~~Vv~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaai~G~a~GgG~~  108 (254)
T 3gow_A           29 LDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMS  108 (254)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECEEE
T ss_conf             99999999999868895899995477764211102432256531100112468888998638997599998899886135


Q ss_pred             -----EEEEECCEEE-EEHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHHHHH
Q ss_conf             -----8987434356-3434-----------------3399999998625993--------8999336995886999999
Q gi|254781065|r  177 -----ILRFHSRVPI-VDPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEEAIA  225 (352)
Q Consensus       177 -----~IRi~TR~pv-~~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~~~~  225 (352)
                           .+||.|..-. .+|+                 ++...+...+--.+..        .-++.++....|+..++.+
T Consensus       109 la~~~D~~ia~~~~~~~~pe~~~G~~p~~g~~~~~~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~~~~  188 (254)
T 3gow_A          109 LALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALS  188 (254)
T ss_dssp             HHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH
T ss_pred             EEECCCCCEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH
T ss_conf             10035400444887898700176868753599999998382100246741860159999987997561480889998765


Q ss_pred             HHHHHHHCC
Q ss_conf             999999879
Q gi|254781065|r  226 AISRLANAG  234 (352)
Q Consensus       226 A~~~L~~~G  234 (352)
                      ...++.+..
T Consensus       189 ~a~~~~~~~  197 (254)
T 3gow_A          189 LAKELAQGP  197 (254)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHCC
T ss_conf             445541011


No 147
>>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} (A:1-243)
Probab=24.59  E-value=45  Score=14.06  Aligned_cols=127  Identities=13%  Similarity=0.110  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC----------------HH-------HHHHHHHHHHCCCCCEE-------
Q ss_conf             8999999999972997479997269813249----------------89-------99999999861998128-------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS----------------HK-------RLQKVLKTLRYIKHVQI-------  177 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~----------------~~-------~L~~ll~~L~~i~hv~~-------  177 (352)
                      .+++.++++.++.+++++=||++|+.+..-+                .+       .+..+...+...|-.-+       
T Consensus        32 ~~~l~~~l~~~~~d~~v~~vVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaai~G~a  111 (243)
T 1nzy_A           32 MQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVA  111 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99999999999868793799997999872588558876512354320467788888899999999968998999867854


Q ss_pred             ------------EEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCC--------CEEEEECCCCHHHC
Q ss_conf             ------------9874343563-434-----------------339999999862599--------38999336995886
Q gi|254781065|r  178 ------------LRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGK--------PVYIAIHANHPYEF  219 (352)
Q Consensus       178 ------------IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~--------~~~iv~H~NHp~El  219 (352)
                                  +||.+..-.+ .|+                 ++-......+--.++        ..-++..+-.+.|+
T Consensus       112 ~GgG~~la~~~D~ria~~~a~f~~p~~~~G~~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  191 (243)
T 1nzy_A          112 AGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEF  191 (243)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHH
T ss_pred             CCCCCEEEHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHCCCCCEECCHHHH
T ss_conf             65553302410476660202213554445767883299999998090553121234787889999987995286386799


Q ss_pred             CHHHHHHHHHHHHCCCE--EEECHHHHHCCCCCHHHH
Q ss_conf             99999999999987989--823279862345788999
Q gi|254781065|r  220 SEEAIAAISRLANAGII--LLSQSVLLKGINDDPEIL  254 (352)
Q Consensus       220 t~~~~~A~~~L~~~Gv~--v~nQsVLLkgVND~~~~l  254 (352)
                      .+++.+.++++.+..-.  ...-..+-+......+.-
T Consensus       192 ~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  228 (243)
T 1nzy_A          192 REVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEEC  228 (243)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9999999999986899999999999998763899999


No 148
>>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA; 1.90A {Geobacillus kaustophilus HTA426} (A:42-147)
Probab=24.39  E-value=46  Score=14.04  Aligned_cols=58  Identities=16%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH
Q ss_conf             4343563434339999999862599389993369958869999999999998798982327
Q gi|254781065|r  181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS  241 (352)
Q Consensus       181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs  241 (352)
                      |-+.-++.|........+.++.++-.|.++.+-..   ..+....|-+-..+.|....||-
T Consensus        47 g~~~~iv~p~~~~~~k~~~l~~~Ga~Vi~v~~~~~---~~~~~~~a~~~a~~~g~~~~~qf  104 (106)
T 2egu_A           47 GYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG---MRGAIAKAEELVREHGYFMPQQF  104 (106)
T ss_dssp             TCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGH---HHHHHHHHHHHHHHHCCBCC---
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99759996799889999999953973697044104---66899999999750495414545


No 149
>>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418)
Probab=24.33  E-value=46  Score=14.03  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHC---CHHHHHHHHHCCC------------------
Q ss_conf             9972698132498999999999861998128987434356343433---9999999862599------------------
Q gi|254781065|r  147 VIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRI---NPELIQCLKEAGK------------------  205 (352)
Q Consensus       147 VilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Ri---t~~L~~~l~~~~~------------------  205 (352)
                      +-+-||   .++.+.|..+.+--++-. .-.+||.||.=+.++.--   -+++++.|.+.+.                  
T Consensus        64 ir~p~G---~it~~ql~~la~ia~~yg-~g~i~lTtRq~iql~gi~~~~~~~v~~~L~~~Gl~t~~~~~~~~~~~~~Gv~  139 (211)
T 1zj8_A           64 VRCDGG---ALSAAALRTLGQISTEFA-RDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTAPEPVKHPIDHVGVQ  139 (211)
T ss_dssp             EBCGGG---EECHHHHHHHHHHHHHHS-TTEEEECTTSCEEEEEECGGGHHHHHHHHHTTTCBCTCCCCCSSCCCCCEEE
T ss_pred             ECCCCC---CCCHHHHHHHHHHHHHHC-CCEEEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf             777886---148999999999999978-8939996780558378888899999999997599864776543555336437


Q ss_pred             ----CEEEEECCCCHHHCCHHHHHHHHHHHH---CC-CE-EEECHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             ----389993369958869999999999998---79-89-823279862345788999999999998698
Q gi|254781065|r  206 ----PVYIAIHANHPYEFSEEAIAAISRLAN---AG-II-LLSQSVLLKGINDDPEILANLMRTFVELRI  266 (352)
Q Consensus       206 ----~~~iv~H~NHp~Elt~~~~~A~~~L~~---~G-v~-v~nQsVLLkgVND~~~~l~~L~~~L~~~gV  266 (352)
                          ..+++.=.--...+|++...++..+.+   .| +. --+|++.|.||+  .+.+.++.+.|.++|+
T Consensus       140 ~q~dg~~~vri~~p~G~lt~~ql~~la~iA~kyg~g~irlTtrQ~i~l~~i~--~~~~~~i~~~L~~~Gl  207 (211)
T 1zj8_A          140 RLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIP--DALLDDLIAGLDALGL  207 (211)
T ss_dssp             ECTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEEC--HHHHHHHHHHHHHTTC
T ss_pred             ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCC--HHHHHHHHHHHHHCCC
T ss_conf             5268845764545884556256599999998539986997640051530463--3409999999997488


No 150
>>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:149-186,A:299-365)
Probab=24.17  E-value=46  Score=14.01  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf             9999999986982423011345765210
Q gi|254781065|r  255 ANLMRTFVELRIKPYYLHHPDLAAGTSH  282 (352)
Q Consensus       255 ~~L~~~L~~~gV~PYYl~~~d~v~G~~h  282 (352)
                      ..+-..|+++||.||-=|-.|-+.|+.-
T Consensus         8 savrdglLEaGv~P~NGft~dH~~GTKi   35 (105)
T 1ju2_A            8 SVTKTAFLEAGVHPNHGFSLDHEEGTRI   35 (105)
T ss_dssp             HHHHHHHHHTTCCCEEEECCBCCSEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             0457787873126577864443478655


No 151
>>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:1-115)
Probab=23.97  E-value=46  Score=13.98  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999999729974799972698132498999999999861
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +..+.+++-.++..  +=++++.|||+..+.  ..++++.+.+
T Consensus        66 ~~~~~i~~~~~~g~--~V~~l~~GDP~~~~~--~~~l~~~~~~  104 (115)
T 1ve2_A           66 AITARLIALAREGR--VVARLKGGDPMVFGR--GGEEALALRR  104 (115)
T ss_dssp             HHHHHHHHHHHTTC--EEEEEESBCTTSSTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC--EEEEECCCCCCCCCH--HHHHHHHHHC
T ss_conf             99999999997798--676741543312242--8899999740


No 152
>>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} (A:)
Probab=23.35  E-value=46  Score=14.00  Aligned_cols=31  Identities=13%  Similarity=0.230  Sum_probs=22.6

Q ss_pred             CCCCCCCCCHHHHHHHC-----CCCHHHHHHHHHHHHH
Q ss_conf             33552249988998641-----9998999999999853
Q gi|254781065|r    2 QLRHKTLTSAQDLYNAN-----LIKKEQIDEIKEISNH   34 (352)
Q Consensus         2 Qlr~~~i~s~~~L~~~l-----~Ls~e~~~~~~~~~~~   34 (352)
                      |+|.  .+|.+.|++++     .|++++...+..|..+
T Consensus        14 k~Rr--css~eTLEkv~e~~~y~L~~~El~~f~~AaDH   49 (72)
T 1jw2_A           14 RLRR--CQTIDTLERVIEKNKYELSDNELAVFYSAADH   49 (72)
T ss_dssp             HHHT--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9981--68587899999971055998999999999999


No 153
>>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} (X:93-239)
Probab=23.09  E-value=48  Score=13.87  Aligned_cols=24  Identities=33%  Similarity=0.328  Sum_probs=14.9

Q ss_pred             HHHHHHHHHH-CCCEEEEEEECCCC
Q ss_conf             9999999972-99747999726981
Q gi|254781065|r  131 TEAALAYIQE-KSQIWEVIFTGGDP  154 (352)
Q Consensus       131 ~~~~~~Yi~~-~~eI~eVilSGGDP  154 (352)
                      ++..++.+++ .++=-.|++||||.
T Consensus       108 i~~~i~~~~~~~~~~~~iv~TGGda  132 (147)
T 2h3g_X          108 VEGIVKRMKEEAKQEPKVIATGGLA  132 (147)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEESTTH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf             9999999999878998799989877


No 154
>>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X* (A:)
Probab=22.85  E-value=49  Score=13.84  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=39.3

Q ss_pred             ECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHH----HCC-------HHHHHHHHHCC-CCEEEEECCCCHH
Q ss_conf             26981324989999999998619981289874343563434----339-------99999986259-9389993369958
Q gi|254781065|r  150 TGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQ----RIN-------PELIQCLKEAG-KPVYIAIHANHPY  217 (352)
Q Consensus       150 SGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~----Rit-------~~L~~~l~~~~-~~~~iv~H~NHp~  217 (352)
                      +.+|.-.-.-.+.++=++.+.++. ++..|++-.=.-+.|.    .++       +++++.|++.+ +|++..-||.+|.
T Consensus        47 ~~~~~a~d~y~~y~eDi~l~~~lG-~~~~R~si~WsRi~P~~~~g~~n~~~~~~Y~~~i~~l~~~Gi~pivtL~H~~~P~  125 (469)
T 2e9l_A           47 QTGDVACGSYTLWEEDLKCIKQLG-LTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQ  125 (469)
T ss_dssp             CCSSSTTCTTTCHHHHHHHHHHHT-CSEEEEECCHHHHSTTSSTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHC-CCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH
T ss_conf             998755763461699999999839-9989804769984147877873799999999999999970986667740565157


Q ss_pred             HC
Q ss_conf             86
Q gi|254781065|r  218 EF  219 (352)
Q Consensus       218 El  219 (352)
                      -+
T Consensus       126 ~l  127 (469)
T 2e9l_A          126 TL  127 (469)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             88


No 155
>>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} (A:1-266,A:460-503)
Probab=22.74  E-value=29  Score=15.42  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             10118699999999999982888654106631788
Q gi|254781065|r  281 SHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPG  315 (352)
Q Consensus       281 ~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~  315 (352)
                      =.|-=+.+.|..|.+..-.++.     +.+.|+-|
T Consensus       237 V~FTGS~~vG~~I~~~aa~~~k-----~~~LELGG  266 (310)
T 1a4s_A          237 VSFTGSVPTGKKVMEMSAKTVK-----HVTLELGG  266 (310)
T ss_dssp             EEEESCHHHHHHHHHHHHTTTC-----EEEEECCC
T ss_pred             EEEECCHHHHHHHHHHHHHCCC-----CEEEECCC
T ss_conf             9987979999999997641488-----37997787


No 156
>>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} (A:1-139,A:242-286)
Probab=22.40  E-value=48  Score=13.86  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=67.8

Q ss_pred             HHHCCHHHHHHH-HHHHHCCCEEEECHHHHHCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             588699999999-999987989823279862345-788999999999998698242301134576521011869999999
Q gi|254781065|r  216 PYEFSEEAIAAI-SRLANAGIILLSQSVLLKGIN-DDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKI  293 (352)
Q Consensus       216 p~Elt~~~~~A~-~~L~~~Gv~v~nQsVLLkgVN-D~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i  293 (352)
                      ..-++++..+++ ..|.+.|+.+      +||.. .+++.+.++.+.+-....-||.-......+-..--..+-..++..
T Consensus        34 ~~~l~~~~~~~l~~~l~~~Gvvi------~Rg~~~~t~~~~~~l~~~~G~~~~~~~~~~~~~~~~v~~~s~~~~~~~l~~  107 (184)
T 1oih_A           34 SPDLDAATVEAIQAALVRHKVIF------FRGQTHLDDQSQEGFAKLLGEPVAHPTVPVVDGTRYLLQLDGAQGQRANSW  107 (184)
T ss_dssp             CTTCCHHHHHHHHHHHHHHSEEE------ECCCTTCCHHHHHHHHHTTSCBCC----CCCTTCSSCEEEC-----CCCSC
T ss_pred             CCCCCHHHHHHHHHHHHHCCEEE------ECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf             98699999999999999779999------869988997898999986074554344565655422310122222344544


Q ss_pred             HHHH--HHHCCCCCCCEEEEECCCCCCCEEECCH--HHEEECCCEEEEECCCCC
Q ss_conf             9999--9828886541066317888882355510--212313987999816998
Q gi|254781065|r  294 VASL--KEKISGLCQPFYILDLPGGYGKVKIDTH--NIKKVGNGSYCITDHHNI  343 (352)
Q Consensus       294 ~~~l--~~~lsG~~~P~~v~d~p~~~GKv~i~~~--~~~~~~~~~~~l~~~~g~  343 (352)
                      ..++  ....|++.. -+.+..|..||-+.+.-+  |--.|+.+.+++-+-.+.
T Consensus       108 H~D~sy~~~pP~~~~-l~c~~~p~~GGeT~~~D~~~~~~~w~~gd~viwdN~~~  160 (184)
T 1oih_A          108 HTDVTFVEAYPKASI-LRSVVAPASGGDTVWANENTVRWRWEAGDVAIWDNRAT  160 (184)
T ss_dssp             BCTTTTSSSCCSEEE-EEEEECCSSCCCEEEEEGGEEEECCCTTCEEEEETTSE
T ss_pred             CCCCCCCCCCCCCEE-EEEEECCCCCCCCCCCHCEEEEEEEECCCEEEECCCEE
T ss_conf             357512458984115-87663267788842110739999953899899957735


No 157
>>3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} (A:124-242)
Probab=22.37  E-value=50  Score=13.77  Aligned_cols=28  Identities=14%  Similarity=0.242  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHC---CCEEEEEEECCCCCCCC
Q ss_conf             99999999729---97479997269813249
Q gi|254781065|r  131 TEAALAYIQEK---SQIWEVIFTGGDPLILS  158 (352)
Q Consensus       131 ~~~~~~Yi~~~---~eI~eVilSGGDPl~l~  158 (352)
                      ++..++.+++.   ..--.|++||||.=.+.
T Consensus        79 i~~~i~~~~~e~~~~~~~~vv~TGGda~~l~  109 (119)
T 3djc_A           79 CKELIQRIHHEAFNGDQILILATGGFASLFD  109 (119)
T ss_dssp             HHHHHHHHHHHTTTTCCEEEEEESTTGGGGT
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf             9999999999834699868999798689886


No 158
>>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120)
Probab=22.36  E-value=50  Score=13.77  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             989999999999729-9747999726981324989999999998619
Q gi|254781065|r  127 SSKDTEAALAYIQEK-SQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~-~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      ....+++..+.+... .+=+=|+++.|||+..+.  ..++++++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~V~~l~~GDP~iy~~--~~~l~~~~~~~  110 (120)
T 1wde_A           66 SRRDLEERSREIVSRALDAVVAVVTAGDPXVATT--HSSLAAEALEA  110 (120)
T ss_dssp             CHHHHHTSHHHHTCCSSCCEEEEEESBCTTSSSS--HHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCH--HHHHHHHHHHC
T ss_conf             5355999999999997379959996689864543--99999999845


No 159
>>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein structure initiative; 2.10A {Bordetella pertussis} (A:1-15,A:92-232)
Probab=22.20  E-value=50  Score=13.75  Aligned_cols=42  Identities=5%  Similarity=0.007  Sum_probs=24.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             556789899999999997299747999726981324989999999998
Q gi|254781065|r  122 KGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTL  169 (352)
Q Consensus       122 ~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L  169 (352)
                      ..+....++..++++++++. .|+=+|+||+-+.+     .+.+..++
T Consensus        12 ~~~~~l~p~~~e~i~~lk~~-Gi~v~ivTg~~~~~-----a~~ia~~l   53 (156)
T 3fvv_A           12 DHTLSLTVQAVDVVRGHLAA-GDLCALVTATNSFV-----TAPIARAF   53 (156)
T ss_dssp             BTTTGCCHHHHHHHHHHHHT-TCEEEEEESSCHHH-----HHHHHHHT
T ss_pred             CCCCHCCHHHHHHHHHHHHC-CCEEEEECCCCHHH-----HHHHHHHC
T ss_conf             78821387699999999975-93699967998999-----99999981


No 160
>>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} (A:1-308,A:422-472)
Probab=22.12  E-value=50  Score=13.74  Aligned_cols=109  Identities=10%  Similarity=0.180  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHC---
Q ss_conf             98999999999972997479997269813249899999999986199812898743435634343399999998625---
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEA---  203 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~---  203 (352)
                      ..+..+.++++++++-..-.+-++--|--.-..+.+..+.+++.++. +.+|.|.--.=...|..+ .+|++.|++.   
T Consensus       142 ~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-~d~I~i~Dt~G~~~P~~~-~~lv~~lk~~~~~  219 (359)
T 1rqb_A          142 DPRNXAHAXAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDXG-ADSIALXDXAALLKPQPA-YDIIKAIKDTYGQ  219 (359)
T ss_dssp             CTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT-CSEEEEEETTCCCCHHHH-HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHH-HHHHHHHHHHCCC
T ss_conf             99998888999995698799999616787879999999976777369-767987157653127799-9999999986575


Q ss_pred             CCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             993899933699588699999999999987989823279
Q gi|254781065|r  204 GKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSV  242 (352)
Q Consensus       204 ~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsV  242 (352)
                      +.++.+.+|-|-=.     +....-.-.++|+....=|+
T Consensus       220 ~i~i~~H~Hnt~Gl-----a~an~laAi~AGad~IDtai  253 (359)
T 1rqb_A          220 KTQINLHCHSTTGV-----TEVSLXKAIEAGVDVVDTAI  253 (359)
T ss_dssp             TCCEEEEEBCTTSC-----HHHHHHHHHHTTCSEEEEBC
T ss_pred             CCCCEEEECCHHHH-----HHHHHHHHHHCCCCEEECCC
T ss_conf             43312312460647-----99999999985988983445


No 161
>>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} (A:1-152,A:298-330)
Probab=21.91  E-value=51  Score=13.71  Aligned_cols=111  Identities=11%  Similarity=0.058  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHH-HHHCCCEEEECHHHHHCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCCCCCCCHHHHH
Q ss_conf             69999999999-9987989823279862345-78899999999999869824230113457-----65210118699999
Q gi|254781065|r  219 FSEEAIAAISR-LANAGIILLSQSVLLKGIN-DDPEILANLMRTFVELRIKPYYLHHPDLA-----AGTSHFRLTIEEGQ  291 (352)
Q Consensus       219 lt~~~~~A~~~-L~~~Gv~v~nQsVLLkgVN-D~~~~l~~L~~~L~~~gV~PYYl~~~d~v-----~G~~hf~v~~~~~~  291 (352)
                      ++++..++++. |.+.|+.+      +||.+ ++++.+.++.+.+-.....||+-...+..     ...........-+|
T Consensus        46 ~~~~~~~~L~~~L~~~Gvvv------fRgq~~~t~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  119 (185)
T 2q4a_A           46 TIKTQKHYLDSLLHESGAVL------FRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPF  119 (185)
T ss_dssp             HHHHTHHHHHHHHHHHSEEE------ECSSCCCSHHHHHHHHHHTCCCBCCCCSCSSCCEEEETTEEECCCSCTTSCEEE
T ss_pred             HHHHHHHHHHHHHHHCCEEE------ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78999999999999779999------899999899999999997287667866777776666675414788986555213


Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCHHHEEEC-CCEEEEECC
Q ss_conf             9999999828886541066317888882355510212313-987999816
Q gi|254781065|r  292 KIVASLKEKISGLCQPFYILDLPGGYGKVKIDTHNIKKVG-NGSYCITDH  340 (352)
Q Consensus       292 ~i~~~l~~~lsG~~~P~~v~d~p~~~GKv~i~~~~~~~~~-~~~~~l~~~  340 (352)
                      +.=..-...-+++.. -|.+..|..+|-+.+    +-.|. ++..++-|+
T Consensus       120 HtD~sy~~~pp~~~~-L~c~~~p~~GGeT~f----~D~~~~~~~~~~~~~  164 (185)
T 2q4a_A          120 HHEMAQVREFPSKLF-FYCEIEPKCGGETPI----VLSWQRGDVLLIDNW  164 (185)
T ss_dssp             ECTTTTSTTCCSEEE-EEEEECCSEECCCCE----EEHCCTTCEEEEETT
T ss_pred             EEECCCCCCCCHHHE-EEEECCCCCCCCCEE----EEHCCCCCEEEECCH
T ss_conf             556567668972431-333102556677657----779389998999150


No 162
>>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* (A:1-254,A:443-479)
Probab=21.88  E-value=32  Score=15.14  Aligned_cols=165  Identities=14%  Similarity=0.110  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHCCC--EEEEEEECCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCEEEEEHHHCCHHHHHHHHH
Q ss_conf             999999999972997--4799972698132498999999999861----9981289874343563434339999999862
Q gi|254781065|r  129 KDTEAALAYIQEKSQ--IWEVIFTGGDPLILSHKRLQKVLKTLRY----IKHVQILRFHSRVPIVDPQRINPELIQCLKE  202 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~e--I~eVilSGGDPl~l~~~~L~~ll~~L~~----i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~  202 (352)
                      +-+.++.++|++|.+  ..-+-.+||-|+..........++.++-    ...+..-......+...-.-.       -.-
T Consensus        70 ~iL~~~a~~l~~~~~ela~l~~~e~gk~~~~a~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~P  142 (291)
T 2imp_A           70 SWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLF-------KRA  142 (291)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTTTTCCCEEECCSSTTEEEEEE-------EEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-------CCC
T ss_conf             9999999999982999999999961984224410001112223321001232046542468864433331-------104


Q ss_pred             CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCCCCC--
Q ss_conf             5993899933699588699999999999987989823279862345788999999999998698242301--134576--
Q gi|254781065|r  203 AGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLH--HPDLAA--  278 (352)
Q Consensus       203 ~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~--~~d~v~--  278 (352)
                      .+ .+.++.-||.|-.+.-.  . +..-..+|.+     |++|-=.+.+-+...|.+-+.+.|.-+-=+-  .++...  
T Consensus       143 ~G-VV~~I~p~N~P~~~~~~--~-~~~ALaaGN~-----VIvKps~~~pl~~~~l~~ll~~Ag~p~gv~~~v~~~~~~~~  213 (291)
T 2imp_A          143 LG-VTTGILPWNFPFFLIAR--K-MAPALLTGNT-----IVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVG  213 (291)
T ss_dssp             CS-EEEEECCSSSHHHHHHH--H-HHHHHHTTCE-----EEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHH
T ss_pred             CC-CEEEECCCHHHHHHHHH--H-HHHHHHHCCE-----EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
T ss_conf             68-34887131125777776--7-9999970891-----79657632719999999999985839680899867928999


Q ss_pred             ---------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             ---------521011869999999999998288865410663178
Q gi|254781065|r  279 ---------GTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLP  314 (352)
Q Consensus       279 ---------G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p  314 (352)
                               ..-.|-=+.+.|..|++..-.++.     +.+.|+.
T Consensus       214 ~~L~~~p~i~~V~FTGS~~vG~~i~~~aa~~lk-----~~~lELG  253 (291)
T 2imp_A          214 QELAGNPKVAMVSMTGSVSAGEKIMATAAKNIT-----KVXLELG  253 (291)
T ss_dssp             HHHHHCTTEEEEEEESCHHHHHHHHHHHHTTTC-----EEEEECC
T ss_pred             HHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCC-----CEEEECC
T ss_conf             999839896779986977999999998655677-----2799768


No 163
>>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} (A:121-235)
Probab=21.61  E-value=41  Score=14.33  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCH
Q ss_conf             99999999729974799972698132498
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIFTGGDPLILSH  159 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~  159 (352)
                      ++..++.+++.-.--.|++||||.-.+.+
T Consensus        78 i~~~i~~~~~~~~~~~vilTGGda~~l~~  106 (115)
T 3bex_A           78 LEGIIGRIKEVYGDLPVVLTGGQSKIVKD  106 (115)
T ss_dssp             HHHHHHHHHHHHCCCCEEEESTTSGGGGG
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCHHHHHH
T ss_conf             99999999998399809996898899986


No 164
>>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* (A:1-261,A:450-487)
Probab=21.32  E-value=52  Score=13.63  Aligned_cols=20  Identities=10%  Similarity=0.252  Sum_probs=12.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHC
Q ss_conf             01186999999999999828
Q gi|254781065|r  282 HFRLTIEEGQKIVASLKEKI  301 (352)
Q Consensus       282 hf~v~~~~~~~i~~~l~~~l  301 (352)
                      .|-=+.+.|.+|++..-.++
T Consensus       233 ~FTGS~~~G~~I~~~aa~~~  252 (299)
T 2w8n_A          233 SFTGSTTTGKILLHHAANSV  252 (299)
T ss_dssp             EEEECHHHHHHHHHHHHTTT
T ss_pred             EEECCHHHHHHHHHHHHHCC
T ss_conf             99698589999999987439


No 165
>>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} (A:)
Probab=21.19  E-value=52  Score=13.61  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=10.9

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCE
Q ss_conf             99999998619981289874343
Q gi|254781065|r  162 LQKVLKTLRYIKHVQILRFHSRV  184 (352)
Q Consensus       162 L~~ll~~L~~i~hv~~IRi~TR~  184 (352)
                      -.++.+-|++-+||..-=+.+|+
T Consensus        98 A~~ia~FL~~~~~v~L~If~aRL  120 (190)
T 2nyt_A           98 ADRIIKTLSKTKNLRLLILVGRL  120 (190)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEEEEECC
T ss_conf             99999999779990899882115


No 166
>>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* (A:148-237,A:286-402)
Probab=21.11  E-value=53  Score=13.60  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      -.+++.+++-...+|+|+=+|||||
T Consensus        49 ~~~l~~~~~~~~~d~~v~~~~~~g~   73 (207)
T 2np9_A           49 VDDMETAVDLALLDPGVRVGLLRGG   73 (207)
T ss_dssp             HHHHHHHHHHHHHCTTCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999999999962999639999688


No 167
>>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A {Thermomonospora fusca} (A:)
Probab=20.99  E-value=52  Score=13.65  Aligned_cols=131  Identities=11%  Similarity=0.011  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-------HHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCC--HHHHHH
Q ss_conf             9999999999729974799972698132498-------9999999998619981289874343563434339--999999
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSH-------KRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRIN--PELIQC  199 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~-------~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit--~~L~~~  199 (352)
                      +.+.+.++-.++||+|-=.-+ +-+|-.-..       +-+..+...++++..-..+.++.-..........  +.....
T Consensus       105 ~~~~~~~~~~~~hpsv~~~~~-~NE~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (302)
T 1bqc_A          105 DYWIELKSVLQGEEDYVLINI-GNEPYGNDSATVAAWATDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTMRNNADQVY  183 (302)
T ss_dssp             HHHHHTHHHHTTCTTTEEEEC-SSSCCCSCHHHHTTHHHHHHHHHHHHHHTTCCSCEEEECTTTTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHCCCCHHCCC
T ss_conf             999999998528997699960-1012789984077899999999999997299868998787645563010013101024


Q ss_pred             HHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE--EEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             8625993899933699588699999999999987989--823279862345788999999999
Q gi|254781065|r  200 LKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGII--LLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       200 l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~--v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                      -.......+...|.-...............+...|.+  +.....-....+...+........
T Consensus       184 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~  246 (302)
T 1bqc_A          184 ASDPTGNTVFSIHMYGVYSQASTITSYLEHFVNAGLPLIIGEFGHDHSDGNPDEDTIMAEAER  246 (302)
T ss_dssp             HTCTTCCEEEEEEESGGGCSHHHHHHHHHHHHHHTCCEEEEEECCTTSTTCCCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             678541658995157785577899999997876698299968776578987899999999998


No 168
>>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} (A:44-145)
Probab=20.77  E-value=53  Score=13.55  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             HHHHHHHHCCCEE-EEE-EECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEE
Q ss_conf             9999997299747-999-72698132498999999999861998128987434356343433999999986259938999
Q gi|254781065|r  133 AALAYIQEKSQIW-EVI-FTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIA  210 (352)
Q Consensus       133 ~~~~Yi~~~~eI~-eVi-lSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv  210 (352)
                      .++.+..+.-.++ .|+ -|+|     +...=-.+..+...+          +.-+++|.....+..+.++.++-.+..+
T Consensus        10 ~~~~~~~~~g~~~~~vv~aSsG-----N~g~alA~~a~~~G~----------~~~iv~p~~~~~~k~~~l~~~Ga~v~~~   74 (102)
T 1o58_A           10 FMILDAEKRGLLKNGIVEPTSG-----NMGIAIAMIGAKRGH----------RVILTMPETMSVERRKVLKMLGAELVLT   74 (102)
T ss_dssp             HHHHHHHHTTCCTTCEEEECSS-----HHHHHHHHHHHHHTC----------CEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHCCCCCCCEEECCCC-----CHHHHHHHHHHHCCC----------CEECCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             9999999759998857967897-----167888889987595----------2323787656299998776169889990


Q ss_pred             ECCCCHHHCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf             336995886999999999999879898232
Q gi|254781065|r  211 IHANHPYEFSEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       211 ~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ  240 (352)
                      ..   .....+....|.+-..+.|....||
T Consensus        75 ~~---~~~~~~~~~~a~~~a~~~g~~~~~q  101 (102)
T 1o58_A           75 PG---ELGMKGAVEKALEISRETGAHMLNQ  101 (102)
T ss_dssp             CG---GGHHHHHHHHHHHHHHHHCCBCCCT
T ss_pred             CC---CCHHHHHHHHHHHHHHHCCCEEECC
T ss_conf             68---7403799999999997559588157


No 169
>>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} (A:273-354,A:409-562)
Probab=20.71  E-value=24  Score=15.99  Aligned_cols=34  Identities=15%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEE---ECC--CCCCCEE
Q ss_conf             999999999998288865410663---178--8888235
Q gi|254781065|r  288 EEGQKIVASLKEKISGLCQPFYIL---DLP--GGYGKVK  321 (352)
Q Consensus       288 ~~~~~i~~~l~~~lsG~~~P~~v~---d~p--~~~GKv~  321 (352)
                      +-..+|.+.++.+|+.|.+|++++   ++|  ...||+-
T Consensus       169 ~~~~~l~~~l~~~Lp~y~vP~~~~~v~~lPl~t~sGKid  207 (236)
T 3ite_A          169 EINNSLRQACEQTLPAYXVPDFIIPISFIPLRDTSAKTD  207 (236)
T ss_dssp             ---------------------------------------
T ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             129999999984587667873999958877999984723


No 170
>>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} (A:)
Probab=20.70  E-value=54  Score=13.54  Aligned_cols=29  Identities=17%  Similarity=0.069  Sum_probs=22.9

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             989999999999729974799972698132
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLI  156 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~  156 (352)
                      .+++..++++++++. .|+=+++||=.|++
T Consensus       130 ~r~~a~~~I~~l~~~-GI~v~miTGD~~~T  158 (165)
T 2arf_A          130 ISSDVSDAMTDHEMK-GQTAILVAIDGVLC  158 (165)
T ss_dssp             SCHHHHHHHHHHHTT-TSEEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHC-CCEEEEEEECCEEE
T ss_conf             898999999999977-99199999999999


No 171
>>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} (A:)
Probab=20.56  E-value=54  Score=13.52  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=42.9

Q ss_pred             HHHHHHHHCCCCEEEEECC------CCHHHCCHHHHHHHHHHHHCC-CEEEECH-HHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999986259938999336------995886999999999999879-8982327-986234578899999999999869
Q gi|254781065|r  195 ELIQCLKEAGKPVYIAIHA------NHPYEFSEEAIAAISRLANAG-IILLSQS-VLLKGINDDPEILANLMRTFVELR  265 (352)
Q Consensus       195 ~L~~~l~~~~~~~~iv~H~------NHp~Elt~~~~~A~~~L~~~G-v~v~nQs-VLLkgVND~~~~l~~L~~~L~~~g  265 (352)
                      .+.++++-+..| ++.+|.      +||+-+|++..   ++|.+.| +.-.|.. -+|..-.+...++..+...+..+.
T Consensus       218 t~~dvl~~s~~P-vi~SHs~~ral~~h~RNl~De~i---r~ia~~GGvIgi~~~~~fl~~~~~~~~t~~~~~~hi~~~~  292 (417)
T 3b40_A          218 ALEQVAALSRAP-IVASHSAPRALVDIKRNLSDHEM---QLIKDSGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDLP  292 (417)
T ss_dssp             HHHHHHHHCSSC-EEEEEECBTTTSCCTTSBCHHHH---HHHHHTTCEEEEECCHHHHSCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCCC-EEECCCCHHHHCCCCCCCCHHHH---HHHHHCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf             999987504666-32214045652774346789999---9999749889995346752677644234688888763013


No 172
>>1jfw_A TAT protein; HIV-1, heteronuclear, drug design, viral protein; NMR {Synthetic} (A:)
Probab=20.50  E-value=29  Score=15.47  Aligned_cols=11  Identities=36%  Similarity=1.114  Sum_probs=9.8

Q ss_pred             CCCCCHHHCCC
Q ss_conf             74300000112
Q gi|254781065|r  103 HVCPVYCRFCF  113 (352)
Q Consensus       103 ~~C~~~CryCf  113 (352)
                      ..|..||..||
T Consensus        28 K~Cc~HCqlCF   38 (86)
T 1jfw_A           28 KKCCFHCQVCF   38 (86)
T ss_dssp             TTBTSSSSCCS
T ss_pred             HHHHHHHHHHH
T ss_conf             00678889988


No 173
>>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} (A:)
Probab=20.34  E-value=54  Score=13.49  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=7.1

Q ss_pred             HHHHHHCCCEEEEEEECCC
Q ss_conf             9999729974799972698
Q gi|254781065|r  135 LAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       135 ~~Yi~~~~eI~eVilSGGD  153 (352)
                      ++-|++.|+=-||||||-+
T Consensus       144 ~~~L~~rp~~~evIlTGr~  162 (196)
T 1g5t_A          144 ISALNARPGHQTVIITGRG  162 (196)
T ss_dssp             HHHHHTSCTTCEEEEECSS
T ss_pred             HHHHHHCCCCCEEEEECCC
T ss_conf             9999858999779997999


No 174
>>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein structure initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} (A:80-377)
Probab=20.13  E-value=48  Score=13.87  Aligned_cols=101  Identities=13%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCE----------------EEEEHHHCCHHHHH
Q ss_conf             99997299747999726981324989999999998619981289874343----------------56343433999999
Q gi|254781065|r  135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRV----------------PIVDPQRINPELIQ  198 (352)
Q Consensus       135 ~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~----------------pv~~P~Rit~~L~~  198 (352)
                      ........-+. ...+.++....+++.+..++....+-.  ..+.+|...                .+..-.-++++.++
T Consensus       132 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~  208 (298)
T 2puz_A          132 LEKAHAEGLAD-AVDGFCEGIAFSVKEIDRVFAAAQQRG--LPVKLHAEQLSNLGGAELAASYNALSADHLEYLDETGAK  208 (298)
T ss_dssp             HHHHHHTTCCS-EECCEESTTSBCHHHHHHHHHHHHHTT--CCBEEEESSSSCCSHHHHHHHTTCSEEEECTTCCHHHHH
T ss_pred             HHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHCCCCEEHHCCCCHHHHHH
T ss_conf             76654433322-103442122343567789999998659--972001133220013566766085300000121044555


Q ss_pred             HHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf             986259938999336995886999999999999879898232
Q gi|254781065|r  199 CLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       199 ~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ  240 (352)
                      .+++.+  +.++...-+..+.-......++.+.++|+++.--
T Consensus       209 ~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~l~~aGv~i~~g  248 (298)
T 2puz_A          209 ALAKAG--TVAVLLPGAFYALREKQLPPVQALRDAGAEIALA  248 (298)
T ss_dssp             HHHHHT--CEEEECHHHHHHHTCCCCCCHHHHHHHTCCEEEC
T ss_pred             HHHHCC--CCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCC
T ss_conf             543101--2210134420111012456166777630330000


No 175
>>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} (A:1-130)
Probab=20.00  E-value=55  Score=13.44  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             899999999997299747999726981324989999999998619
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
                      .+..+.+++..++...|  ++++-|||+..+.  ..+++..+.+-
T Consensus        80 ~~~~~~i~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~~  120 (130)
T 1cbf_A           80 EEMVGTMLDRMREGKMV--VRVHTGDPAMYGA--IMEQMVLLKRE  120 (130)
T ss_dssp             HHHHHHHHHHHTTTCCE--EEEESBCTTTTCC--CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEE--EEECCCCCCCCCC--HHHHHHHHHHC
T ss_conf             88899999999809846--7635886422260--67789999732


Done!