Query gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 352 No_of_seqs 148 out of 661 Neff 5.4 Searched_HMMs 33803 Date Wed Jun 1 21:35:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781065.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2a5h_A L-lysine 2,3-aminomuta 100.0 3.9E-26 1.1E-30 205.3 21.7 248 75-324 1-248 (248) 2 >1tv8_A MOAA, molybdenum cofac 99.5 7.7E-12 2.3E-16 104.3 21.5 253 83-346 2-277 (313) 3 >3c8f_A Pyruvate formate-lyase 99.3 3.7E-11 1.1E-15 99.5 11.4 188 87-282 11-209 (245) 4 >3iix_A Biotin synthetase, put 99.3 5E-10 1.5E-14 91.5 16.1 201 92-303 50-262 (348) 5 >1olt_A Oxygen-independent cop 99.1 6.5E-09 1.9E-13 83.6 15.5 190 93-286 50-254 (364) 6 >1r30_A Biotin synthase; SAM r 99.0 2.7E-08 8E-13 79.2 15.2 209 88-307 59-283 (369) 7 >2yx0_A Radical SAM enzyme; pr 98.9 6.3E-08 1.9E-12 76.6 12.6 212 87-310 63-315 (342) 8 >2z2u_A UPF0026 protein MJ0257 98.5 1.2E-06 3.6E-11 67.5 9.0 200 88-301 45-284 (311) 9 >3can_A Pyruvate-formate lyase 98.3 6.1E-05 1.8E-09 55.5 14.6 123 143-276 3-134 (182) 10 >2qgq_A Protein TM_1862; alpha 98.2 2.8E-05 8.2E-10 58.0 11.6 104 95-205 4-112 (112) 11 >2a5h_A L-lysine 2,3-aminomuta 94.6 0.023 6.9E-07 37.3 2.6 28 325-352 1-28 (36) 12 >1sfs_A Hypothetical protein; 86.4 1.5 4.3E-05 24.6 4.9 168 129-313 11-186 (240) 13 >1xpj_A Hypothetical protein; 83.9 1.4 4.3E-05 24.6 4.0 69 217-285 23-97 (126) 14 >3cog_A Cystathionine gamma-ly 81.1 1.5 4.6E-05 24.4 3.3 104 129-233 11-140 (142) 15 >1cs1_A CGS, protein (cystathi 78.8 3.1 9E-05 22.3 4.2 104 129-233 11-140 (140) 16 >2ex2_A Penicillin-binding pro 76.7 3.9 0.00012 21.6 4.2 34 146-180 22-59 (123) 17 >3a2b_A Serine palmitoyltransf 73.6 6.6 0.00019 20.0 4.7 81 220-300 34-124 (131) 18 >1w79_A D-alanyl-D-alanine car 73.6 4.6 0.00014 21.1 3.9 36 147-183 24-62 (129) 19 >2iex_A Dihydroxynapthoic acid 72.3 2.9 8.7E-05 22.4 2.7 30 128-157 41-70 (211) 20 >3a3d_A PBP4, penicillin-bindi 71.8 5.1 0.00015 20.8 3.8 35 147-182 24-61 (121) 21 >2cvi_A 75AA long hypothetical 70.9 8.1 0.00024 19.3 4.9 54 127-180 11-71 (83) 22 >2r8c_A Putative amidohydrolas 70.6 8.2 0.00024 19.3 8.6 107 128-239 41-190 (199) 23 >2hz5_A Dynein light chain 2A, 70.6 8.2 0.00024 19.3 4.7 60 125-184 8-85 (106) 24 >1a2z_A Pyrrolidone carboxyl p 70.4 5.6 0.00016 20.5 3.7 93 145-237 2-132 (220) 25 >1w5d_A Penicillin-binding pro 69.0 6.3 0.00019 20.1 3.8 35 147-182 24-61 (125) 26 >3fdu_A Putative enoyl-COA hyd 68.9 8.9 0.00026 19.1 4.7 32 128-159 34-65 (266) 27 >1byr_A Protein (endonuclease) 68.1 9.2 0.00027 18.9 7.1 84 185-275 8-91 (155) 28 >1gc0_A Methionine gamma-lyase 67.9 9.3 0.00027 18.9 5.3 101 129-230 11-137 (138) 29 >1e5e_A MGL, methionine gamma- 67.2 9.6 0.00028 18.8 7.9 102 129-236 11-143 (146) 30 >1hux_A Activator of (R)-2-hyd 66.0 7.3 0.00022 19.7 3.6 66 100-173 66-140 (143) 31 >2h5g_A Delta 1-pyrroline-5-ca 64.7 4.8 0.00014 20.9 2.5 91 95-193 167-267 (303) 32 >2qgq_A Protein TM_1862; alpha 64.4 5.2 0.00016 20.7 2.6 98 190-301 10-112 (122) 33 >3i4p_A Transcriptional regula 63.8 11 0.00033 18.4 6.7 56 127-182 22-83 (109) 34 >2dky_A RHO-GTPase-activating 63.4 6.2 0.00018 20.2 2.8 43 221-263 21-75 (91) 35 >3en9_A Glycoprotease, O-sialo 61.8 8.3 0.00025 19.3 3.3 43 131-176 111-153 (161) 36 >2rfv_A Methionine gamma-lyase 61.4 12 0.00036 18.1 5.9 96 129-230 11-137 (139) 37 >2cyy_A Putative HTH-type tran 60.6 13 0.00037 18.0 6.1 55 128-182 20-80 (94) 38 >2ho4_A Haloacid dehalogenase- 60.0 8.3 0.00025 19.3 3.0 53 213-271 18-70 (140) 39 >2e0n_A Precorrin-2 C20-methyl 58.5 14 0.0004 17.8 4.1 41 128-172 83-123 (133) 40 >1x10_A Pyrrolidone-carboxylat 58.5 11 0.00032 18.5 3.4 92 146-238 2-132 (208) 41 >1s4d_A Uroporphyrin-III C-met 56.6 15 0.00043 17.5 5.1 41 128-172 79-119 (130) 42 >3bpt_A 3-hydroxyisobutyryl-CO 55.8 7.3 0.00022 19.7 2.1 27 128-154 35-61 (363) 43 >3h75_A Periplasmic sugar-bind 55.6 15 0.00045 17.4 7.5 129 130-270 5-142 (142) 44 >1vlu_A Gamma-glutamyl phospha 55.1 5.3 0.00016 20.7 1.3 55 132-193 199-257 (293) 45 >1dci_A Dienoyl-COA isomerase; 55.1 8.3 0.00025 19.2 2.3 29 128-156 33-61 (249) 46 >3l3s_A Enoyl-COA hydratase/is 54.5 16 0.00046 17.3 3.7 26 128-153 35-60 (209) 47 >3i47_A Enoyl COA hydratase/is 53.5 13 0.00039 17.8 3.2 106 128-233 33-203 (221) 48 >2h80_A STAR-related lipid tra 53.4 6.4 0.00019 20.1 1.5 43 221-263 19-73 (81) 49 >3lac_A Pyrrolidone-carboxylat 52.9 13 0.0004 17.8 3.1 153 145-301 2-200 (215) 50 >3kqf_A Enoyl-COA hydratase/is 52.1 16 0.00047 17.3 3.4 46 129-174 39-103 (207) 51 >3kwp_A Predicted methyltransf 52.0 17 0.00051 17.0 4.6 44 127-173 74-117 (125) 52 >2a6a_A Hypothetical protein T 51.2 7.2 0.00021 19.7 1.5 28 245-272 101-135 (149) 53 >2w25_A Probable transcription 50.7 12 0.00037 18.0 2.7 49 129-177 23-77 (94) 54 >2c1l_A Restriction endonuclea 50.3 4.5 0.00013 21.2 0.3 90 179-272 10-99 (184) 55 >1l6r_A Hypothetical protein T 49.8 14 0.00041 17.7 2.8 71 213-292 17-92 (160) 56 >3gkb_A Putative enoyl-COA hyd 49.8 18 0.00054 16.8 3.4 28 128-155 37-64 (227) 57 >2cfx_A HTH-type transcription 49.8 18 0.00055 16.8 5.5 52 127-178 19-76 (89) 58 >2e1c_A Putative HTH-type tran 48.9 19 0.00056 16.7 6.8 54 128-181 20-79 (94) 59 >2q02_A Putative cytoplasmic p 48.8 19 0.00056 16.7 4.4 168 127-306 49-240 (272) 60 >1pjq_A CYSG, siroheme synthas 48.5 19 0.00057 16.7 3.3 42 127-172 67-108 (118) 61 >1pff_A Methionine gamma-lyase 48.4 15 0.00046 17.4 2.8 101 129-230 11-136 (137) 62 >3eno_A Putative O-sialoglycop 48.1 16 0.00047 17.3 2.8 36 133-171 113-148 (161) 63 >3giu_A Pyrrolidone-carboxylat 47.2 20 0.00058 16.6 3.2 148 145-302 4-202 (215) 64 >3fzq_A Putative hydrolase; YP 46.7 16 0.00047 17.3 2.7 24 214-237 18-41 (160) 65 >1aug_A Pyroglutamyl peptidase 46.5 20 0.00058 16.6 3.1 146 145-298 3-197 (215) 66 >2o8r_A Polyphosphate kinase; 45.7 21 0.00061 16.5 3.1 14 252-265 324-337 (389) 67 >1hzd_A AUH, AU-binding protei 45.1 22 0.00064 16.3 3.2 46 128-173 41-105 (213) 68 >2ivn_A O-sialoglycoprotein en 44.8 17 0.0005 17.1 2.6 38 135-175 118-155 (164) 69 >2bb3_A Cobalamin biosynthesis 44.6 16 0.00049 17.2 2.5 42 128-173 75-116 (123) 70 >1wz8_A Enoyl-COA hydratase; l 43.9 18 0.00054 16.9 2.6 27 128-154 39-65 (244) 71 >1zjj_A Hypothetical protein P 43.6 5.9 0.00017 20.3 0.1 50 215-270 14-63 (131) 72 >2ppy_A Enoyl-COA hydratase; b 43.4 23 0.00068 16.1 3.4 27 128-154 37-63 (207) 73 >2ews_A Pantothenate kinase; P 43.3 23 0.00068 16.1 4.5 36 139-176 125-160 (167) 74 >2pq0_A Hypothetical conserved 42.6 20 0.00059 16.6 2.7 36 129-170 23-58 (158) 75 >2fq6_A Cystathionine beta-lya 42.5 7.4 0.00022 19.6 0.5 96 129-230 11-137 (138) 76 >1uiy_A Enoyl-COA hydratase; l 42.2 24 0.0007 16.0 3.4 29 128-156 28-56 (198) 77 >1t57_A Conserved protein MTH1 41.5 24 0.00072 16.0 6.0 46 200-248 69-119 (206) 78 >3g64_A Putative enoyl-COA hyd 41.5 7.7 0.00023 19.5 0.4 27 128-154 46-72 (236) 79 >3lke_A Enoyl-COA hydratase; n 41.1 25 0.00073 15.9 3.1 26 128-153 33-58 (263) 80 >2z6r_A Diphthine synthase; me 41.0 25 0.00073 15.9 3.9 37 131-171 67-103 (122) 81 >1vjr_A 4-nitrophenylphosphata 40.5 21 0.00061 16.5 2.5 51 214-270 29-79 (145) 82 >2hx1_A Predicted sugar phosph 39.9 17 0.0005 17.1 1.9 52 216-273 28-79 (162) 83 >1i1g_A Transcriptional regula 39.2 26 0.00078 15.7 5.2 53 127-179 19-78 (87) 84 >3ir2_A DNA DC->DU-editing enz 39.0 24 0.00072 15.9 2.7 75 132-211 83-162 (207) 85 >1rkq_A Hypothetical protein Y 38.8 27 0.00079 15.7 2.9 36 129-170 25-60 (176) 86 >3bf0_A Protease 4; bacterial, 38.7 27 0.00079 15.7 5.5 54 127-182 29-86 (223) 87 >3kd9_A Coenzyme A disulfide r 38.6 27 0.0008 15.6 5.6 50 194-243 41-92 (120) 88 >3h0u_A Putative enoyl-COA hyd 37.3 25 0.00074 15.9 2.5 47 128-174 36-104 (289) 89 >3lhk_A Putative DNA binding p 37.2 28 0.00084 15.5 5.8 95 102-210 2-100 (104) 90 >2q35_A CURF; crotonase, lyase 36.6 29 0.00085 15.4 3.4 40 128-167 32-71 (243) 91 >1nz8_A Transcription antiterm 36.6 29 0.00085 15.4 3.2 86 78-172 33-118 (119) 92 >1va0_A Uroporphyrin-III C-met 36.3 29 0.00086 15.4 5.6 41 128-172 62-102 (120) 93 >2djw_A Probable transcription 36.2 28 0.00083 15.5 2.6 56 127-182 11-73 (92) 94 >2gqq_A Leucine-responsive reg 36.2 29 0.00087 15.4 4.1 53 127-179 22-81 (100) 95 >2fp4_B Succinyl-COA ligase [G 35.6 30 0.00089 15.3 7.4 45 127-171 58-102 (152) 96 >2zvb_A Precorrin-3 C17-methyl 35.6 30 0.00089 15.3 4.7 40 128-171 61-100 (131) 97 >2c4n_A Protein NAGD; nucleoti 35.3 13 0.00039 17.9 0.8 70 195-276 26-96 (144) 98 >1mj3_A Enoyl-COA hydratase, m 35.1 30 0.0009 15.3 3.7 28 128-155 36-63 (238) 99 >2cb1_A O-acetyl homoserine su 35.1 30 0.0009 15.3 3.1 100 129-230 11-135 (135) 100 >3jyv_N 40S ribosomal protein 34.6 8 0.00024 19.4 -0.4 20 86-116 23-42 (50) 101 >2qbu_A Precorrin-2 methyltran 34.5 31 0.00092 15.2 6.2 38 131-172 84-121 (131) 102 >2pqm_A Cysteine synthase; OAS 34.4 31 0.00092 15.2 3.0 88 131-236 9-99 (109) 103 >1pjh_A Enoyl-COA isomerase; E 33.9 32 0.00094 15.1 3.4 27 128-154 38-64 (280) 104 >3l49_A ABC sugar (ribose) tra 33.8 32 0.00094 15.1 3.5 120 132-261 6-131 (141) 105 >3gk0_A PNP synthase, pyridoxi 33.1 20 0.00058 16.6 1.4 12 160-171 142-153 (278) 106 >2p5v_A Transcriptional regula 32.8 33 0.00098 15.0 6.3 53 128-180 22-81 (102) 107 >1ble_A Fructose permease; pho 32.6 33 0.00098 15.0 2.5 38 219-260 123-160 (163) 108 >1q52_A MENB; lyase, structura 32.6 33 0.00098 15.0 3.4 27 128-154 66-92 (290) 109 >1nrw_A Hypothetical protein, 32.6 33 0.00098 15.0 2.9 34 130-169 25-58 (159) 110 >1xto_A Coenzyme PQQ synthesis 32.5 20 0.00058 16.6 1.3 44 194-237 105-148 (150) 111 >2csu_A 457AA long hypothetica 32.3 34 0.00099 15.0 7.4 133 95-240 20-159 (183) 112 >1m5w_A Pyridoxal phosphate bi 32.2 34 0.001 15.0 3.2 16 167-182 201-216 (243) 113 >1jbq_A Cystathionine beta-syn 32.0 34 0.001 14.9 4.1 81 145-240 26-107 (108) 114 >2j5i_A P-hydroxycinnamoyl COA 31.5 35 0.001 14.9 3.9 27 128-154 38-64 (211) 115 >2b30_A Pvivax hypothetical pr 30.9 35 0.001 14.8 2.4 23 215-237 42-64 (192) 116 >1wdk_A Fatty oxidation comple 30.7 36 0.0011 14.8 3.4 126 128-253 37-230 (284) 117 >2nu8_B SCS-beta, succinyl-COA 30.4 36 0.0011 14.8 7.6 45 127-171 57-101 (151) 118 >3epr_A Hydrolase, haloacid de 30.3 25 0.00073 15.9 1.5 18 219-236 22-39 (154) 119 >1vsq_C Mannose-specific phosp 30.0 37 0.0011 14.7 2.5 38 219-260 125-162 (165) 120 >3f9r_A Phosphomannomutase; tr 29.9 37 0.0011 14.7 2.8 24 214-237 17-40 (142) 121 >3etc_A AMP-binding protein; a 29.4 37 0.0011 14.6 3.6 37 284-320 53-93 (105) 122 >2pn6_A ST1022, 150AA long hyp 29.3 38 0.0011 14.6 6.6 56 127-182 21-83 (97) 123 >2zbc_A 83AA long hypothetical 29.1 38 0.0011 14.6 6.2 52 128-179 12-70 (83) 124 >2ej5_A Enoyl-COA hydratase su 29.1 38 0.0011 14.6 3.4 49 128-176 32-97 (199) 125 >2vx2_A Enoyl-COA hydratase do 29.0 35 0.001 14.8 2.1 53 87-152 33-86 (230) 126 >1y7l_A O-acetylserine sulfhyd 28.9 38 0.0011 14.6 3.0 57 181-240 47-103 (105) 127 >2j5g_A ALR4455 protein; enzym 28.2 39 0.0012 14.5 3.4 108 128-235 53-224 (263) 128 >1f06_A MESO-diaminopimelate D 28.2 35 0.001 14.8 2.0 126 162-303 15-145 (154) 129 >1wr8_A Phosphoglycolate phosp 28.1 36 0.0011 14.7 2.1 41 129-175 23-63 (162) 130 >2v03_A Cysteine synthase B; p 28.0 39 0.0012 14.5 4.8 57 182-241 48-104 (109) 131 >3klj_A NAD(FAD)-dependent deh 27.8 40 0.0012 14.5 4.6 50 194-243 34-86 (102) 132 >1sg4_A 3,2-trans-enoyl-COA is 27.4 40 0.0012 14.4 3.4 26 128-153 33-58 (260) 133 >1wkv_A Cysteine synthase; hom 27.4 40 0.0012 14.4 3.2 57 181-240 45-101 (102) 134 >3h02_A Naphthoate synthase; I 27.2 41 0.0012 14.4 3.4 107 128-234 56-228 (265) 135 >3dnp_A Stress response protei 26.9 41 0.0012 14.3 2.9 37 129-171 26-62 (175) 136 >1yv9_A Hydrolase, haloacid de 26.9 36 0.0011 14.7 1.9 20 218-237 21-40 (154) 137 >1nrz_A PTS system, sorbose-sp 26.7 42 0.0012 14.3 2.5 38 219-260 122-159 (164) 138 >2oaj_A Protein SNI1; WD40 rep 26.6 27 0.0008 15.6 1.2 18 139-156 17-34 (77) 139 >2oyc_A PLP phosphatase, pyrid 26.5 42 0.0012 14.3 3.9 77 191-273 8-86 (166) 140 >1ef8_A Methylmalonyl COA deca 26.2 42 0.0013 14.3 2.8 105 129-233 34-201 (221) 141 >2a7k_A CARB; crotonase, antib 25.8 43 0.0013 14.2 3.6 108 128-235 29-200 (250) 142 >3g7s_A Long-chain-fatty-acid- 25.4 35 0.001 14.9 1.6 30 291-320 54-87 (105) 143 >3js3_A 3-dehydroquinate dehyd 25.3 44 0.0013 14.2 8.0 109 127-239 61-174 (258) 144 >3ipl_A 2-succinylbenzoate--CO 24.9 45 0.0013 14.1 2.9 26 286-311 50-75 (103) 145 >2q3b_A Cysteine synthase A; p 24.9 45 0.0013 14.1 4.6 57 181-240 47-104 (105) 146 >3gow_A PAAG, probable enoyl-C 24.7 45 0.0013 14.1 3.4 107 128-234 29-197 (254) 147 >1nzy_A Dehalogenase, 4-chloro 24.6 45 0.0013 14.1 3.4 127 128-254 32-228 (243) 148 >2egu_A Cysteine synthase; O-a 24.4 46 0.0013 14.0 3.2 58 181-241 47-104 (106) 149 >1zj8_A Probable ferredoxin-de 24.3 46 0.0014 14.0 5.6 114 147-266 64-207 (211) 150 >1ju2_A HydroxynitrIle lyase; 24.2 46 0.0014 14.0 2.9 28 255-282 8-35 (105) 151 >1ve2_A Uroporphyrin-III C-met 24.0 46 0.0014 14.0 4.9 39 129-171 66-104 (115) 152 >1jw2_A Hemolysin expression m 23.3 46 0.0014 14.0 1.9 31 2-34 14-49 (72) 153 >2h3g_X Biosynthetic protein; 23.1 48 0.0014 13.9 2.5 24 131-154 108-132 (147) 154 >2e9l_A Cytosolic beta-glucosi 22.9 49 0.0014 13.8 4.8 69 150-219 47-127 (469) 155 >1a4s_A ALDH, betaine aldehyde 22.7 29 0.00086 15.4 0.7 30 281-315 237-266 (310) 156 >1oih_A Putative alkylsulfatas 22.4 48 0.0014 13.9 1.8 121 216-343 34-160 (184) 157 >3djc_A Type III pantothenate 22.4 50 0.0015 13.8 3.6 28 131-158 79-109 (119) 158 >1wde_A Probable diphthine syn 22.4 50 0.0015 13.8 3.9 44 127-172 66-110 (120) 159 >3fvv_A Uncharacterized protei 22.2 50 0.0015 13.7 3.2 42 122-169 12-53 (156) 160 >1rqb_A Transcarboxylase 5S su 22.1 50 0.0015 13.7 10.4 109 127-242 142-253 (359) 161 >2q4a_A Clavaminate synthase-l 21.9 51 0.0015 13.7 1.9 111 219-340 46-164 (185) 162 >2imp_A Lactaldehyde dehydroge 21.9 32 0.00094 15.1 0.8 165 129-314 70-253 (291) 163 >3bex_A Type III pantothenate 21.6 41 0.0012 14.3 1.4 29 131-159 78-106 (115) 164 >2w8n_A Succinate-semialdehyde 21.3 52 0.0015 13.6 3.8 20 282-301 233-252 (299) 165 >2nyt_A Probable C->U-editing 21.2 52 0.0016 13.6 4.2 23 162-184 98-120 (190) 166 >2np9_A DPGC; protein inhibito 21.1 53 0.0016 13.6 3.1 25 128-152 49-73 (207) 167 >1bqc_A Protein (beta-mannanas 21.0 52 0.0015 13.6 1.7 131 129-260 105-246 (302) 168 >1o58_A O-acetylserine sulfhyd 20.8 53 0.0016 13.6 3.2 90 133-240 10-101 (102) 169 >3ite_A SIDN siderophore synth 20.7 24 0.00071 16.0 0.0 34 288-321 169-207 (236) 170 >2arf_A Wilson disease ATPase; 20.7 54 0.0016 13.5 2.2 29 127-156 130-158 (165) 171 >3b40_A PVDM, probable dipepti 20.6 54 0.0016 13.5 6.3 67 195-265 218-292 (417) 172 >1jfw_A TAT protein; HIV-1, he 20.5 29 0.00084 15.5 0.3 11 103-113 28-38 (86) 173 >1g5t_A COB(I)alamin adenosylt 20.3 54 0.0016 13.5 2.4 19 135-153 144-162 (196) 174 >2puz_A Imidazolonepropionase; 20.1 48 0.0014 13.9 1.4 101 135-240 132-248 (298) 175 >1cbf_A Cobalt-precorrin-4 tra 20.0 55 0.0016 13.4 5.3 41 128-172 80-120 (130) No 1 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342) Probab=99.95 E-value=3.9e-26 Score=205.30 Aligned_cols=248 Identities=41% Similarity=0.800 Sum_probs=234.2 Q ss_pred CCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 37310000076887145207537999727430000011223301255556789899999999997299747999726981 Q gi|254781065|r 75 EDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 75 ~DPl~E~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) .||+.|....|+++..|+|+.++.+.+|..|+..|+||+++...+.. ....+.+.+.+++..++....+++|++|||+| T Consensus 1 ~D~l~e~~~~~~~~~~~~~~~~~~i~~T~~Cn~~C~~C~~~~~~~~~-~~~~~~e~i~~~~~~~~~~~~~~~i~~~ggep 79 (248) T 2a5h_A 1 EDPLHEDTDSPVPGLTHRYPDRVLLLITDXCSXYCRHCTRRRFAGQS-DDSXPXERIDKAIDYIRNTPQVRDVLLSGGDA 79 (248) T ss_dssp SSTTCTTTSCSBTTEECCSSSEEEEEEESCCSSCCTTCTTTTTTTSS-SSBCCHHHHHHHHHHHHTCTTCCEEEEEESCT T ss_pred CCCCCCCCCCCCCCCEEECCCEEEEEECCCCCEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 47653111356887313337547998414301004512542335763-34214999999999998389836999856985 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCC Q ss_conf 32498999999999861998128987434356343433999999986259938999336995886999999999999879 Q gi|254781065|r 155 LILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAG 234 (352) Q Consensus 155 l~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~G 234 (352) ++.+...+.+++..+.+..+...+++.|......++++...+...+.... -..-..+..+-........+++++++++| T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 158 (248) T 2a5h_A 80 LLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNXLKKYH-PVWLNTHFNHPNEITEESTRACQLLADAG 158 (248) T ss_dssp TSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGGC-SEEEEECCCSGGGCCHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCHHHHHHHHHHHHCC T ss_conf 62688999999999970899754888705542461656899998530266-48997214765443034899999999779 Q ss_pred CEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 89823279862345788999999999998698242301134576521011869999999999998288865410663178 Q gi|254781065|r 235 IILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLP 314 (352) Q Consensus 235 v~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p 314 (352) ..+.-.++++.|.||+.+.+.++.+.+.++|+.+.+++...+.+|+.++..+.....++++.+...++++..+.++.+++ T Consensus 159 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~t~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 238 (248) T 2a5h_A 159 VPLGNQSVLLRGVNDCVHVXKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAP 238 (248) T ss_dssp CCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCGGGCCEEEEEET T ss_pred CEEEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 86987461678615877899999999984883899976126775232037889999999998775389744303764168 Q ss_pred CCCCCEEECC Q ss_conf 8888235551 Q gi|254781065|r 315 GGYGKVKIDT 324 (352) Q Consensus 315 ~~~GKv~i~~ 324 (352) ++.||++|.| T Consensus 239 ~~~G~l~i~p 248 (248) T 2a5h_A 239 GGGGKTPVXP 248 (248) T ss_dssp TTTEEEECCC T ss_pred CCCCCCCCCC T ss_conf 8988500566 No 2 >>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313) Probab=99.54 E-value=7.7e-12 Score=104.27 Aligned_cols=253 Identities=13% Similarity=0.190 Sum_probs=168.1 Q ss_pred CCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCC-----CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC Q ss_conf 0768871452075379997274300000112233012555-----56789899999999997299747999726981324 Q gi|254781065|r 83 HSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQK-----GTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLIL 157 (352) Q Consensus 83 ~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~-----~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l 157 (352) .+++++..|+|+..+.+.+|..|+..|+||+.....+... ....+.+++.+.++.+.. ..+..|.++||+|++. T Consensus 2 ~~~~~~~~~~~~~~~~i~~t~~Cn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~GGEP~l~ 80 (313) T 1tv8_A 2 VEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITGGEPLMR 80 (313) T ss_dssp -CCCBCTTSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEESSCGGGS T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCC T ss_conf 341725899813847998424017879688975006777765761035899999999999997-6981997479840026 Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCC-CCEEEEECCCCHHH---C------CHHHHHHH Q ss_conf 98999999999861998128987434356343433999999986259-93899933699588---6------99999999 Q gi|254781065|r 158 SHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAG-KPVYIAIHANHPYE---F------SEEAIAAI 227 (352) Q Consensus 158 ~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~-~~~~iv~H~NHp~E---l------t~~~~~A~ 227 (352) ++ +.+++..+.+...+..+.+.|-. .++++....+...+ ..+.+....-.+.. + -..+.+++ T Consensus 81 ~~--~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~isi~~~~~~~~~~~~~~~~~~~~~~~~i 152 (313) T 1tv8_A 81 RD--LDVLIAKLNQIDGIEDIGLTTNG------LLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQI 152 (313) T ss_dssp TT--HHHHHHHHTTCTTCCEEEEEECS------TTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHH T ss_pred CH--HHHHHHHHHHCCCCCCEECCCCC------CCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHEECCCCCCHHHHHH T ss_conf 10--69999986402544310013331------23406899999839998872255788888756200477521012689 Q ss_pred HHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99998798982327986234578899999999999869824230113457652101186999999999999828886541 Q gi|254781065|r 228 SRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQP 307 (352) Q Consensus 228 ~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P 307 (352) +.++++|+.+....+.+.+.| .+.+.++.+.+.++|+....+.......+...+.-...................... T Consensus 153 ~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (313) T 1tv8_A 153 DYATSIGLNVKVNVVIQKGIN--DDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVE 230 (313) T ss_dssp HHHHHTTCEEEEEEEECTTTT--GGGHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSCEEEEC T ss_pred HHHHHCCCCEEEEEEECCCCC--CCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 999985998336368616755--001289999998527430232552055455533224677899988888743554333 Q ss_pred EEEEE-------CCCCCCCE-EECCHHHEEECCCEEEEECCCCCEEE Q ss_conf 06631-------78888823-55510212313987999816998871 Q gi|254781065|r 308 FYILD-------LPGGYGKV-KIDTHNIKKVGNGSYCITDHHNIVHD 346 (352) Q Consensus 308 ~~v~d-------~p~~~GKv-~i~~~~~~~~~~~~~~l~~~~g~~~~ 346 (352) ..... ..+..... ...+.............-+++|.++. T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dG~v~~ 277 (313) T 1tv8_A 231 PKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYG 277 (313) T ss_dssp CSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEES T ss_pred CCCCCCCHHHHEECCCCCCCCEEEEECCCCCCCCCEEEECCCCEEEE T ss_conf 33467721220000348730114440266568755057614726986 No 3 >>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Probab=99.31 E-value=3.7e-11 Score=99.47 Aligned_cols=188 Identities=11% Similarity=0.101 Sum_probs=139.2 Q ss_pred CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCHHHHHH Q ss_conf 871452075379997274300000112233012555567898999999999972--997479997269813249899999 Q gi|254781065|r 87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQE--KSQIWEVIFTGGDPLILSHKRLQK 164 (352) Q Consensus 87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~--~~eI~eVilSGGDPl~l~~~~L~~ 164 (352) +...|.+|..+.+.+|..|+..|.||+.....+.......+.+++...++-+.+ .+.+..+.++||+|++..+ .+.. T Consensus 11 ~~~~~~~~~~~~i~~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGep~l~~~-~~~~ 89 (245) T 3c8f_A 11 SCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE-FVRD 89 (245) T ss_dssp EEECTTSSSEEEEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHH-HHHH T ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHH T ss_conf 940682797289998689688798999803318679917889999999999999851588668715677442678-9999 Q ss_pred HHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC-------CHHHHHHHHHHHHCCCE Q ss_conf 99998619981289874343563434339999999862599-38999336995886-------99999999999987989 Q gi|254781065|r 165 VLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF-------SEEAIAAISRLANAGII 236 (352) Q Consensus 165 ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El-------t~~~~~A~~~L~~~Gv~ 236 (352) +++.+.+ ..+....+.+-. ..+++.+..+...+. .+.+...-..+.-. ...+.++++.+.+.|.. T Consensus 90 l~~~~~~-~~~~~~~~tn~~------~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 162 (245) T 3c8f_A 90 WFRACKK-EGIHTCLDTNGF------VRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVK 162 (245) T ss_dssp HHHHHHT-TTCCEEEEECCC------CCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCC T ss_pred HHHHHHH-HCCCEEEECCCC------CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCC T ss_conf 9999886-357146613773------114455565421332101145001006788876273326667665454225551 Q ss_pred EEECHHHHHCCCCCHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCC Q ss_conf 8232798623457889999999999986982-423011345765210 Q gi|254781065|r 237 LLSQSVLLKGINDDPEILANLMRTFVELRIK-PYYLHHPDLAAGTSH 282 (352) Q Consensus 237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~-PYYl~~~d~v~G~~h 282 (352) +.-+++++.|.||+.+.+.++.+-+.+.|.. ...+....+..|+.. T Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (245) T 3c8f_A 163 VWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKW 209 (245) T ss_dssp EEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHH T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH T ss_conf 37766323898899999999999998579975588714762564247 No 4 >>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:) Probab=99.28 E-value=5e-10 Score=91.49 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=147.9 Q ss_pred ECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 20753799972743000001122330125555678989999999999729974799972698132498999999999861 Q gi|254781065|r 92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 92 kY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +.+-.+.+..|..|+.+|.||.-....+.......+.+++.+.++.+++. .+.+|+++||+|+.+.+..+..+...+.. T Consensus 50 ~~~~~~~i~~t~gC~~~C~fC~~~~~~~~~~~~~~~~e~i~~~i~~~~~~-g~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 128 (348) T 3iix_A 50 EVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQF-GAKTIVLQSGEDPYXMPDVISDIVKEIKK 128 (348) T ss_dssp EEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHT-TCSEEEEEESCCGGGTTHHHHHHHHHHHT T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHC T ss_conf 76999999877886998957998666898652314578899999999971-88256540265234527888899886401 Q ss_pred CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC-EEEEECCCCHHHC--------CHHHHHHHHHHHHCCCEEEECHH Q ss_conf 99812898743435634343399999998625993-8999336995886--------99999999999987989823279 Q gi|254781065|r 172 IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP-VYIAIHANHPYEF--------SEEAIAAISRLANAGIILLSQSV 242 (352) Q Consensus 172 i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~-~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~v~nQsV 242 (352) +...-..+ +.-++++.++.|++.+.. +.+...--++.-+ ...+.++++.+++.|+.+.-... T Consensus 129 ~~~~~~~~---------~~~~~~~~~~~l~~~g~~~v~i~les~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~i 199 (348) T 3iix_A 129 MGVAVTLS---------LGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSM 199 (348) T ss_dssp TSCEEEEE---------CCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBE T ss_pred CCHHCCCC---------CCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 20100234---------441168999999874262788444423345521000033201567777787876531241057 Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCC Q ss_conf 8623457889999999999986982423011345765210118---699999999999982888 Q gi|254781065|r 243 LLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL---TIEEGQKIVASLKEKISG 303 (352) Q Consensus 243 LLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v---~~~~~~~i~~~l~~~lsG 303 (352) + -.-+++.+.+.++.+.+.++|+.-.+++...+.+|+..+.. +.++........+..... T Consensus 200 ~-g~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (348) T 3iix_A 200 V-GLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPD 262 (348) T ss_dssp E-SCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTT T ss_pred E-CCCCCCHHHHHHHHHHHHHHHHCEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 6-27765668888889999875533405510123599975568998989999999999987898 No 5 >>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364) Probab=99.12 E-value=6.5e-09 Score=83.59 Aligned_cols=190 Identities=15% Similarity=0.182 Sum_probs=142.1 Q ss_pred CCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHH----HHHHHHH--HCCCEEEEEEECCCCCCCCHHHHHHHH Q ss_conf 0753799972743000001122330125555678989999----9999997--299747999726981324989999999 Q gi|254781065|r 93 YPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTE----AALAYIQ--EKSQIWEVIFTGGDPLILSHKRLQKVL 166 (352) Q Consensus 93 Y~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~----~~~~Yi~--~~~eI~eVilSGGDPl~l~~~~L~~ll 166 (352) ....+++.++..|+..|.||.-..+.+.... .+.+..+ +..+.+. ....+..+.++||+|.......+..++ T Consensus 50 ~~~~~~~~~~rGC~~~C~fC~~~~~~~~~~~--~~~~~~~~~~~ei~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 127 (364) T 1olt_A 50 ERPLSLYVHIPFCHKLCYFCGCNKIVTRQQH--KADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLM 127 (364) T ss_dssp TSCEEEEEEECEESSCCTTCCSSCEECSCTH--HHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHH T ss_pred CCCEEEEEEECCCCCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH T ss_conf 9953999971898988899988256588855--19999999999999977663899746999748751659999999999 Q ss_pred HHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC--------CHHHHHHHHHHHHCCCEE Q ss_conf 998619981289874343563434339999999862599-38999336995886--------999999999999879898 Q gi|254781065|r 167 KTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF--------SEEAIAAISRLANAGIIL 237 (352) Q Consensus 167 ~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~v 237 (352) +.++++.....+.+-+ ..+.+..+++++++.|++.+. .+.+-...-+++-+ -+.+.++++.++++|+.. T Consensus 128 ~~i~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~~G~~~i~ig~es~~~~~~~~~~k~~~~~~~~~~i~~~~~~g~~~ 205 (364) T 1olt_A 128 KLLRENFQFNADAEIS--IEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTS 205 (364) T ss_dssp HHHHHHSCEEEEEEEE--EEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCS T ss_pred HHHHHHCCCCCCCEEE--EEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC T ss_conf 9999865777662147--98349987277899997379987998368686788866406687899999999999842553 Q ss_pred EECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC Q ss_conf 2327986234578899999999999869824230113457652101186 Q gi|254781065|r 238 LSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLT 286 (352) Q Consensus 238 ~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~ 286 (352) .+-.++.-.-+++.+.+.++.+.+.++++.--.++...+.+|+..+..+ T Consensus 206 v~~~~i~g~p~et~~~~~~~l~~~~~~~~~~~~i~~~~p~~gt~~~~~~ 254 (364) T 1olt_A 206 TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRK 254 (364) T ss_dssp CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGG T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECEECCCHHHHHHC T ss_conf 4034047799842677899999998408983344311007842776623 No 6 >>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:) Probab=99.03 E-value=2.7e-08 Score=79.22 Aligned_cols=209 Identities=12% Similarity=0.133 Sum_probs=143.2 Q ss_pred CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHH Q ss_conf 7145207537999727430000011223301255--55678989999999999729974799972698132498999999 Q gi|254781065|r 88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQ--KGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKV 165 (352) Q Consensus 88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~--~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~l 165 (352) .-..+++..+++.+|..|+..|.||.-....+.. .....+.+++.+.++.++.. .++.|.++||+|++..+ .+..+ T Consensus 59 ~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~-g~~~i~~~gg~~~~~~~-~~~~~ 136 (369) T 1r30_A 59 DPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA-GSTRFCMGAAWKNPHER-DMPYL 136 (369) T ss_dssp CTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT-TCSEEEEEECCSSCCTT-THHHH T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCCCCHH-HHHHH T ss_conf 98979998687744899998792299834189998754557878999999999973-99799998735886526-99999 Q ss_pred HHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---------CHHHHHHHHHHHHCCCE Q ss_conf 999861998128987434356343433999999986259938999336995886---------99999999999987989 Q gi|254781065|r 166 LKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---------SEEAIAAISRLANAGII 236 (352) Q Consensus 166 l~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---------t~~~~~A~~~L~~~Gv~ 236 (352) ++.++...... -...+.+..+|++.++.|++.+.. .+.....-.+|. -..+.++++.++++|+. T Consensus 137 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 209 (369) T 1r30_A 137 EQMVQGVKAMG------LEACMTLGTLSESQAQRLANAGLD-YYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 209 (369) T ss_dssp HHHHHHHHHTT------SEEEEECSSCCHHHHHHHHHHCCC-EEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCE T ss_pred HHHHHHHHHCC------CEEECCCCCCCHHHHHHHHHCCCC-EEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99999865238------445305577899999999847860-89753020201220467778899999999999986991 Q ss_pred EEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEE--EEECCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 823279862345788999999999998698242--30113457652101---186999999999999828886541 Q gi|254781065|r 237 LLSQSVLLKGINDDPEILANLMRTFVELRIKPY--YLHHPDLAAGTSHF---RLTIEEGQKIVASLKEKISGLCQP 307 (352) Q Consensus 237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PY--Yl~~~d~v~G~~hf---~v~~~~~~~i~~~l~~~lsG~~~P 307 (352) +....++ |.+++.+.+.++...+.++++.+. +++...+.+|+..+ .....+........+........+ T Consensus 210 ~~~~~i~--g~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (369) T 1r30_A 210 VCSGGIV--GLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVR 283 (369) T ss_dssp EECCEEE--CSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEE T ss_pred EEEEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE T ss_conf 6521483--6999999999999999865889888760510689998644467999999999999999978887626 No 7 >>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:) Probab=98.88 E-value=6.3e-08 Score=76.64 Aligned_cols=212 Identities=11% Similarity=0.030 Sum_probs=132.5 Q ss_pred CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCC---CCCCHHHH----HHHHHHHHHC---------------CCE Q ss_conf 8714520753799972743000001122330125555---67898999----9999999729---------------974 Q gi|254781065|r 87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKG---TVLSSKDT----EAALAYIQEK---------------SQI 144 (352) Q Consensus 87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~---~~~~~~~~----~~~~~Yi~~~---------------~eI 144 (352) .+..++++..+.+.+|..|+..|.||+.......... ...+.+.+ ..+++-.... ..+ T Consensus 63 ~~~~~~~~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (342) T 2yx0_A 63 FYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNP 142 (342) T ss_dssp HHCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSC T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC T ss_conf 12634644488768412527779889998877777555455579899999999999998765326753026777751487 Q ss_pred E-EEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---- Q ss_conf 7-99972698132498999999999861998128987434356343433999999986259938999336995886---- Q gi|254781065|r 145 W-EVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---- 219 (352) Q Consensus 145 ~-eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---- 219 (352) . -++.+||+|++..+ +..+++.+....-. +-+.|.. ..+.+ ++....+... ..++...++.+.+- T Consensus 143 ~~~~~~~~gep~~~~~--~~~~~~~~~~~~~~--~~~~tn~--~~~~~--~~~~~~~~~~--~~~v~isl~~~~~~~~~~ 212 (342) T 2yx0_A 143 THAAISLSGEPMLYPY--MGDLVEEFHKRGFT--TFIVTNG--TIPER--LEEMIKEDKL--PTQLYVSITAPDIETYNS 212 (342) T ss_dssp CEEEECSSSCGGGSTT--HHHHHHHHHHTTCE--EEEEECS--CCHHH--HHHHHHTTCC--CSEEEEEECCSSHHHHHH T ss_pred CEEEEECCCCCCCCHH--HHHHHHHHHHCCCE--EEEECCC--CCHHH--HHHHHHHHCC--CCEEEECCCCCCHHHHHH T ss_conf 5799946877545440--99999999863972--8995488--77258--9998864257--757996278999899998 Q ss_pred ---------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-----CC Q ss_conf ---------9999999999998798982327986234578899999999999869824230113457652101-----18 Q gi|254781065|r 220 ---------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHF-----RL 285 (352) Q Consensus 220 ---------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf-----~v 285 (352) ...+.++++.++++|+.+....+++.|.||+ .+.++.+-+.++|+.--.++...+.+|+..+ .. T Consensus 213 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~~~~~~~~g~n~~--~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~ 290 (342) T 2yx0_A 213 VNIPMIPDGWERILRFLELMRDLPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMP 290 (342) T ss_dssp HHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSC T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCC T ss_conf 7187777789999999999996699889999986898878--89999999987499889986525568860112401499 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 6999999999999828886541066 Q gi|254781065|r 286 TIEEGQKIVASLKEKISGLCQPFYI 310 (352) Q Consensus 286 ~~~~~~~i~~~l~~~lsG~~~P~~v 310 (352) +.++-++..+.++....+.-..... T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (342) T 2yx0_A 291 SHQDIREFAEALVKHLPGYHIEDEY 315 (342) T ss_dssp CHHHHHHHHHHHHTTCTTEEEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCEEECCC T ss_conf 8899999999999872696642266 No 8 >>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:) Probab=98.46 E-value=1.2e-06 Score=67.52 Aligned_cols=200 Identities=15% Similarity=0.082 Sum_probs=114.5 Q ss_pred CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCC-------CCCC------------------HHHHHHHHHHHH--H Q ss_conf 714520753799972743000001122330125555-------6789------------------899999999997--2 Q gi|254781065|r 88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKG-------TVLS------------------SKDTEAALAYIQ--E 140 (352) Q Consensus 88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~-------~~~~------------------~~~~~~~~~Yi~--~ 140 (352) ...++.|.++.+.+|..|+..|.||+.......... .... .+...+.++.+. . T Consensus 45 ~~~~~~~~~~~~~~~~~CNl~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~cn~~C~~c~~~~~~~~~i~~~~~~~ 124 (311) T 2z2u_A 45 YGIETHRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKE 124 (311) T ss_dssp HCCCGGGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHH T ss_pred ECCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 26146662432126310226794678977777666731012334379899999999999999864036665410566776 Q ss_pred CCCEE-EEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC Q ss_conf 99747-99972698132498999999999861998128987434356343433999999986259938999336995886 Q gi|254781065|r 141 KSQIW-EVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF 219 (352) Q Consensus 141 ~~eI~-eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El 219 (352) ...+. -|+++||+|++.++ +.+++..+.+.. -.+.|-|-... +++.+ ...-..+.+..+.-.+... T Consensus 125 ~~~~~~~~~~~GGepll~~~--~~~~~~~~~~~~--~~~~i~TNG~~-----~~~~~----~~~l~~~~is~~~~~~~~~ 191 (311) T 2z2u_A 125 ALEPKHVAISLSGEPTLYPY--LDELIKIFHKNG--FTTFVVSNGIL-----TDVIE----KIEPTQLYISLDAYDLDSY 191 (311) T ss_dssp HTSCCEEEECSSSCGGGSTT--HHHHHHHHHHTT--CEEEEEECSCC-----HHHHH----HCCCSEEEEECCCSSTTTC T ss_pred HCCCCEEEEECCCCCCCCCC--HHHHHHHHHHHC--CHHEEECCCCC-----HHHHH----HCCCCEEEEEECCCCHHHH T ss_conf 42775799815887410027--999999986303--02100005542-----36776----2366168987357999999 Q ss_pred C----------HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCCCH Q ss_conf 9----------9999999999987989823279862345788999999999998--698242301134576521011869 Q gi|254781065|r 220 S----------EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVE--LRIKPYYLHHPDLAAGTSHFRLTI 287 (352) Q Consensus 220 t----------~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~--~gV~PYYl~~~d~v~G~~hf~v~~ 287 (352) . ..+.++ .++...|+++.-++++++|.+|+.+.+.++...+-. +.+.||+-+-..+.........+. T Consensus 192 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~i~~~i~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (311) T 2z2u_A 192 RRICGGKKEYWESILNT-LDILKEKKRTCIRTTLIRGYNDDILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQH 270 (311) T ss_dssp ----CCCHHHHHHHHHH-HHHHTTSSSEEEEEEECTTTTCCGGGTHHHHHHHTCSEEEEEECC------------CCCCH T ss_pred HHHHCCCCCHHHHHHHH-HHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCH T ss_conf 99868765639999999-99998669859999726686528999999987459888999600741466331630039989 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999999999828 Q gi|254781065|r 288 EEGQKIVASLKEKI 301 (352) Q Consensus 288 ~~~~~i~~~l~~~l 301 (352) ++-.+..+.+.... T Consensus 271 ~~~~~~~~~~~~~~ 284 (311) T 2z2u_A 271 DEILKLAKMLDENS 284 (311) T ss_dssp HHHHHHHHHHHTSS T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999987546 No 9 >>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Probab=98.31 E-value=6.1e-05 Score=55.52 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=90.0 Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH---- Q ss_conf 7479997269813249899999999986199812898743435634343399999998625993899933699588---- Q gi|254781065|r 143 QIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE---- 218 (352) Q Consensus 143 eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E---- 218 (352) .|+.|.+|||+||+-++ .+..+++.+.+.. -.+-+.|.. +++ ++....+...- -++.+.++.+.+ T Consensus 3 g~~~v~~tGGEPll~~d-~i~~i~~~~~~~g--~~~~l~Tng--~~~----~~~~~~~~~~~--~~i~isld~~~~~~~~ 71 (182) T 3can_A 3 AGGGVTFCGGEPLLHPE-FLIDILKRCGQQG--IHRAVDTTL--LAR----KETVDEVXRNC--ELLLIDLKSXDSTVHQ 71 (182) T ss_dssp -CCCEEECSSTGGGSHH-HHHHHHHHHHHTT--CCEEEECTT--CCC----HHHHHHHHHTC--SEEEEECCCSCHHHHH T ss_pred CCCCEEEECCCCCCCHH-HHHHHHHHHHHCC--CCEEEEECC--CHH----HHHHHHHHHHC--CHHCCCCCCCHHHHHH T ss_conf 99848997133308988-9999999998779--929997252--110----77777665200--0002432200388888 Q ss_pred -----CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf -----6999999999999879898232798623457889999999999986982423011345 Q gi|254781065|r 219 -----FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDL 276 (352) Q Consensus 219 -----lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~ 276 (352) -...+.++++.|++.|+.+.-.+|+.+|.||+.+.+.++.+.+..+|+.-.+++.... T Consensus 72 ~~~~~~~~~~~~~i~~l~~~~~~~~i~~~~~~~~~d~~~ei~~~~~~~~~~~~~~~~i~~~~~ 134 (182) T 3can_A 72 TFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 134 (182) T ss_dssp HHHSSCSHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 787302578886666676630231244302279759999999999999866998479866556 No 10 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112) Probab=98.24 E-value=2.8e-05 Score=57.95 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=80.7 Q ss_pred CEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH-----HHHHHHHH Q ss_conf 5379997274300000112233012555567898999999999972997479997269813249899-----99999998 Q gi|254781065|r 95 DRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKR-----LQKVLKTL 169 (352) Q Consensus 95 ~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~-----L~~ll~~L 169 (352) -.+-+.++-.|+..|+||.-..+.+.. ...+.+.+.+-++++.+. .++++.+.++|-...+... +.++++.+ T Consensus 4 ~~~~i~tsRGCp~~C~FC~~~~~~g~~--r~r~~~~v~~ei~~l~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (112) T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSL--RSRSIEDITREVEDLLKE-GKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (112) T ss_dssp SEEEEESBCCC-------------CCC--CBCCHHHHHHHHHHHHHT-TCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH T ss_pred CEEEEEECCCCCCCCEECEEEEEECCE--EEECHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 509989867989977557342122972--870999999999999987-99689998503664554233443278887655 Q ss_pred HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC Q ss_conf 619981289874343563434339999999862599 Q gi|254781065|r 170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK 205 (352) Q Consensus 170 ~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~ 205 (352) .+++....+|++| ..|..++++|++.+++.++ T Consensus 81 ~~~~~~~~~~~~~----~~~~~i~~ell~~l~~~~k 112 (112) T 2qgq_A 81 NSLNGEFWIRVXY----LHPDHLTEEIISAXLELDK 112 (112) T ss_dssp HTSSSSCEEEECC----CCGGGCCHHHHHHHHHCTT T ss_pred HCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCC T ss_conf 3034411012123----4663332110000023775 No 11 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:343-378) Probab=94.58 E-value=0.023 Score=37.31 Aligned_cols=28 Identities=4% Similarity=0.199 Sum_probs=25.7 Q ss_pred HHHEEECCCEEEEECCCCCEEECCCCCC Q ss_conf 0212313987999816998871898899 Q gi|254781065|r 325 HNIKKVGNGSYCITDHHNIVHDYPPKSS 352 (352) Q Consensus 325 ~~~~~~~~~~~~l~~~~g~~~~yp~~~~ 352 (352) +|++++++++++||||+|.+..|++|.+ T Consensus 1 nYliSqs~~kVvLRNyEGVIttY~EP~~ 28 (36) T 2a5h_A 1 NYVISQSHDKVILRNFEGVITTYSEPIN 28 (36) T ss_dssp CCEEEEETTEEEEECTTCCEEEEECCTT T ss_pred CCCCCCCCCEEEEECCCCCEEEECCCCC T ss_conf 4301478867999668873786458888 No 12 >>1sfs_A Hypothetical protein; structural genomics, unknown function, possible bacterial lysozyme, PSI, protein structure initiative; 1.07A {Geobacillus stearothermophilus} (A:) Probab=86.36 E-value=1.5 Score=24.61 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=99.5 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEE Q ss_conf 99999999997299747999726981324989999999998619981289874343563434339999999862599389 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVY 208 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~ 208 (352) .+++....+++. ..|+.|-+-||-|-.|+.+.|..+++.+++- ...-+...-+ +-.|-.+|.+.++.|++.+.+-. T Consensus 11 ~~l~~~~~~~~~-~~~~~iy~GGGTPt~L~~~~l~~l~~~~~~~--f~~~~~~e~t-~E~~p~lt~~~l~~l~~~GvnRi 86 (240) T 1sfs_A 11 VDLGTENLYFQS-NAMARGIWGVDSAQVVTDQLFQCVRTELGYP--KFWGRYLSEV-PNVSEGLTRDEIVRIRNYGVKVL 86 (240) T ss_dssp ------------------CEEEEECSSCCCHHHHHHHHHHTCCC--SEEEEESSCB-TTTBCBCCHHHHHHHHHTTCEEE T ss_pred CCCCCCEECCCC-CHHHHCCCCCCCCCCCCHHHHHHHHHCCCCE--EEEEEECCCC-CCCCCCCCHHHHHHHHHCCCEEE T ss_conf 477883552475-1222003263213120699999998637815--7998766899-88467678899999998898799 Q ss_pred EEECCCCHHHC----CHHHHHHHHHHHHCCCEEEECHHHHHCCC---CCHHHHHHHHH-HHHHCCCEEEEEECCCCCCCC Q ss_conf 99336995886----99999999999987989823279862345---78899999999-999869824230113457652 Q gi|254781065|r 209 IAIHANHPYEF----SEEAIAAISRLANAGIILLSQSVLLKGIN---DDPEILANLMR-TFVELRIKPYYLHHPDLAAGT 280 (352) Q Consensus 209 iv~H~NHp~El----t~~~~~A~~~L~~~Gv~v~nQsVLLkgVN---D~~~~l~~L~~-~L~~~gV~PYYl~~~d~v~G~ 280 (352) -+++.-.+..+ -..+.+++...+..|.+ ||+++.-.+. +....-..++. .+...+...-=. T Consensus 87 SivQSf~~~~l~~~gR~~~~~~v~~a~~~G~~--~~~li~~~l~~~~~l~~~~i~~y~l~~~~~~~~~~~~--------- 155 (240) T 1sfs_A 87 PIYNAFREAVGYANGQVAARNAVFHARRLGIP--KNKLLFANIEDFFAVDAAWIAAWVETLYPTGYRPGLY--------- 155 (240) T ss_dssp EEECCCSCBCCHHHHHHHHHHHHHHHHHTTCC--SSCEEEEECCTTSCBCHHHHHHHHHHHHHHTCEEEEE--------- T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE--------- T ss_conf 98211765214888878999999999973999--8968999841454557899999999999759975997--------- Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 101186999999999999828886541066317 Q gi|254781065|r 281 SHFRLTIEEGQKIVASLKEKISGLCQPFYILDL 313 (352) Q Consensus 281 ~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~ 313 (352) =..+.++..+.+......++......+.... T Consensus 156 --~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~ 186 (240) T 1sfs_A 156 --ADPTKGDFAAAYCEAVSRNNQVAVQAVIWSA 186 (240) T ss_dssp --ECTTSTTHHHHHHHHHHHCTHHHHHCEEEEC T ss_pred --CCCCHHHHHHHHHCCCCCHHHHHHHHCCEEC T ss_conf --1585056788752144351667654131011 No 13 >>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} (A:) Probab=83.91 E-value=1.4 Score=24.63 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=53.2 Q ss_pred HHCCHHHHHHHHHHHHCCC---EEEECHHHHHCCCC---CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC Q ss_conf 8869999999999998798---98232798623457---889999999999986982423011345765210118 Q gi|254781065|r 217 YEFSEEAIAAISRLANAGI---ILLSQSVLLKGIND---DPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL 285 (352) Q Consensus 217 ~Elt~~~~~A~~~L~~~Gv---~v~nQsVLLkgVND---~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v 285 (352) .++.|.+.+|+++++++|. .+-||+-..+|..- .......+.+.|...|+.-.-.+.+.+-.|..+|.+ T Consensus 23 ~~~~p~v~e~l~~l~~~G~~ivi~Tnq~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~k~~~~~~~~~~ 97 (126) T 1xpj_A 23 VLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYI 97 (126) T ss_dssp CCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCCSEEEECCCCCCTTCEEE T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEE T ss_conf 785799999999999789999999566532457866565787999999999982998269986899877799985 No 14 >>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B (A:262-403) Probab=81.14 E-value=1.5 Score=24.44 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=67.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEE----------------ECCCCCCC-----CHHHHHHHHHHHHCCCCCEEEEEECCEEEE Q ss_conf 999999999972997479997----------------26981324-----989999999998619981289874343563 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIF----------------TGGDPLIL-----SHKRLQKVLKTLRYIKHVQILRFHSRVPIV 187 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVil----------------SGGDPl~l-----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~ 187 (352) +.-....+|+++||.|..|.- +||-.++. +.+....+++.|.-+.+--.+ =+++..+. T Consensus 11 ~nA~~lA~~L~~~p~V~~V~yP~l~~~~~~~l~~~~~~g~~g~lsf~~~~~~~~~~~f~~~l~l~~~~~S~-G~~~SL~~ 89 (142) T 3cog_A 11 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESL-GGFESLAE 89 (142) T ss_dssp HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC-SSSSCEEE T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEECCCC-CCCCCEEC T ss_conf 99999999999689935797589888821999996189987067989769899999999738935554677-77562400 Q ss_pred EHHH-----CCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHC Q ss_conf 4343-----399999998625993899933699588699999999999987 Q gi|254781065|r 188 DPQR-----INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANA 233 (352) Q Consensus 188 ~P~R-----it~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~ 233 (352) .|.. .+++-.+...-...-+-+.+-+.+|.+|-....+|+++++.. T Consensus 90 ~~~~~~~~~~~~~~~~~~Gi~~~liRlSvGlE~~edLi~Dl~~Al~~~~~~ 140 (142) T 3cog_A 90 LPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHPP 140 (142) T ss_dssp CTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCCC T ss_pred CCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC T ss_conf 765224322899999975989495999958599999999999999836678 No 15 >>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:247-386) Probab=78.77 E-value=3.1 Score=22.33 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=68.1 Q ss_pred HHHHHHHHHHHHCCCEEEEEEE----------------CCCCCCC-----CHHHHHHHHHHHHCCCCCEEEEEECCEEEE Q ss_conf 9999999999729974799972----------------6981324-----989999999998619981289874343563 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFT----------------GGDPLIL-----SHKRLQKVLKTLRYIKHVQILRFHSRVPIV 187 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilS----------------GGDPl~l-----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~ 187 (352) +.-.+..+|+++||.|..|.-- ||-+++. +......+++.|.-+.+--.+ =+.+..+. T Consensus 11 ~nA~~la~~L~~~~~v~~V~yPgl~~~p~~~~~~k~~~ggg~~~~f~~~~~~~~~~~F~~~l~l~~~~~Sl-Gg~~SL~~ 89 (140) T 1cs1_A 11 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESL-GGVESLIS 89 (140) T ss_dssp HHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCC-CSSSCEEE T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHCCCCEECCCC-CCCCCEEE T ss_conf 99999999643588666631012220258999876158986400300134699999999828826455156-87530330 Q ss_pred EHHH-----CCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHC Q ss_conf 4343-----399999998625993899933699588699999999999987 Q gi|254781065|r 188 DPQR-----INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANA 233 (352) Q Consensus 188 ~P~R-----it~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~ 233 (352) .|.. ++++-...+.-...-+-+.+-..+|.+|-....+|++.+.++ T Consensus 90 ~~~~~~~~~~~~~~~~~~Gi~~~lvRlSvGlE~~edLi~Dl~~AL~~~~~~ 140 (140) T 1cs1_A 90 HAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG 140 (140) T ss_dssp EGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC T ss_pred CCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 661005311799999866989296999765299999999999999986179 No 16 >>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} (A:60-137,A:231-275) Probab=76.75 E-value=3.9 Score=21.56 Aligned_cols=34 Identities=18% Similarity=0.483 Sum_probs=24.0 Q ss_pred EEEE-ECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEE Q ss_conf 9997-2698132498999999999861--99812-8987 Q gi|254781065|r 146 EVIF-TGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRF 180 (352) Q Consensus 146 eVil-SGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi 180 (352) +++| .||||. |+.+.|..++++|.+ |.+|+ .|-+ T Consensus 22 dLyIkGsGDPt-Ltse~L~~La~~Lk~~GIr~I~GdIvi 59 (123) T 2ex2_A 22 DLVARFGADPT-LKRQDIRNMVATLKKSGVNQIDGNVLI 59 (123) T ss_dssp EEEEECCCCTT-CCHHHHHHHHHHHHHTTCCEEESCEEE T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEECCEEEE T ss_conf 18998268998-466689999999997188511340673 No 17 >>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:29-54,A:294-398) Probab=73.64 E-value=6.6 Score=19.99 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=53.2 Q ss_pred CHHHHHHHHHHHHCCCEEE-ECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCH---------HH Q ss_conf 9999999999998798982-3279862345788999999999998698242301134576521011869---------99 Q gi|254781065|r 220 SEEAIAAISRLANAGIILL-SQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTI---------EE 289 (352) Q Consensus 220 t~~~~~A~~~L~~~Gv~v~-nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~---------~~ 289 (352) ...+....+.|++.|+.+. .++++.--.-++.+....+++.|.+.|+.-.+..-+---.|.+++|+++ ++ T Consensus 34 ~~n~~~l~~~L~~~Gf~v~~s~s~iv~i~~~~~~~~~~l~~~L~e~Gi~V~~~~~P~vP~g~~~lRisita~~t~eeId~ 113 (131) T 3a2b_A 34 WKNTDYAKAQLLDHGFDLGATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDE 113 (131) T ss_dssp HHHHHHHHHHHHHTTCCBCSCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHH T ss_conf 98888877543203888689999989999898899999999999789279888899889998069999887799999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999982 Q gi|254781065|r 290 GQKIVASLKEK 300 (352) Q Consensus 290 ~~~i~~~l~~~ 300 (352) ..+.+.++... T Consensus 114 lieal~ei~~~ 124 (131) T 3a2b_A 114 AIEKMVKVFKQ 124 (131) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 18 >>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} (A:66-145,A:240-288) Probab=73.63 E-value=4.6 Score=21.09 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.2 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEEECC Q ss_conf 9972698132498999999999861--99812-8987434 Q gi|254781065|r 147 VIFTGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRFHSR 183 (352) Q Consensus 147 VilSGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi~TR 183 (352) +|.-+||| +|+.+.|..++++|++ |.+|+ .|.+-.. T Consensus 24 ~IkGsGDP-tLtse~L~~La~~Lk~~GIr~I~G~IviD~S 62 (129) T 1w79_A 24 YLVGRGDP-TLSAEDLDAMAAEVAASGVRTVRGDLYADDT 62 (129) T ss_dssp EEEECSCT-TCCHHHHHHHHHHHHHTTCCEECSCEEEECT T ss_pred EEEECCCC-CCCHHHHHHHHHHHHHHCCCEECCCEEECCC T ss_conf 99955899-8788899999999997287555055797154 No 19 >>2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* (A:1-211) Probab=72.28 E-value=2.9 Score=22.44 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCC Q ss_conf 899999999997299747999726981324 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLIL 157 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l 157 (352) -+++.++++.++++++++-|||+||.+-.. T Consensus 41 ~~~l~~~l~~~~~d~~v~~vVl~g~~~~~f 70 (211) T 2iex_A 41 VNEMIDAFTKARDDSNIGVIILTGAGGKAF 70 (211) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSSEE T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCHHH T ss_conf 999999999997486665244226885011 No 20 >>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272) Probab=71.80 E-value=5.1 Score=20.76 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=24.6 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEEEC Q ss_conf 9972698132498999999999861--99812-898743 Q gi|254781065|r 147 VIFTGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRFHS 182 (352) Q Consensus 147 VilSGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi~T 182 (352) +|.-|||| +|+.+.|..++..|.+ |..|+ .|-+-+ T Consensus 24 ~i~G~GDP-tLt~~~L~~la~~Lk~~GI~~I~G~iiiD~ 61 (121) T 3a3d_A 24 IVSFTGDP-DLTRGQLYSLLAELKKQGIKKINGDLVLDT 61 (121) T ss_dssp EEECCCCT-TCCHHHHHHHHHHHHHTTCCEECSCEEEEC T ss_pred EEEECCCC-CCCHHHHHHHHHHHHHHCCCEECCCEEECC T ss_conf 99834799-889899999999999618752404323023 No 21 >>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii OT3} PDB: 2z4p_A 2e1a_A (A:) Probab=70.89 E-value=8.1 Score=19.34 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=42.1 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHH-HHHHCCCCCEEEEE Q ss_conf 9899999999997299747999726981324------989999999-99861998128987 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVL-KTLRYIKHVQILRF 180 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll-~~L~~i~hv~~IRi 180 (352) .....++..+.+++.|+|.++-...||.=.+ +.+.|..++ +.|..+|+|+.++- T Consensus 11 ~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~T 71 (83) T 2cvi_A 11 AAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTST 71 (83) T ss_dssp CTTCHHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEE T ss_pred CCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 7899999999997699988898970889999999989999999999998645999817999 No 22 >>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} (A:134-332) Probab=70.63 E-value=8.2 Score=19.30 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=67.1 Q ss_pred HHHH-HHHHHHHHHCCCEEEEEEEC--------CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC-------------CEE Q ss_conf 8999-99999997299747999726--------9813249899999999986199812898743-------------435 Q gi|254781065|r 128 SKDT-EAALAYIQEKSQIWEVIFTG--------GDPLILSHKRLQKVLKTLRYIKHVQILRFHS-------------RVP 185 (352) Q Consensus 128 ~~~~-~~~~~Yi~~~~eI~eVilSG--------GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~T-------------R~p 185 (352) .++. +...+.++...+--.+..+| +++...+.+.|..+.+..++.. -.+.+|. +.. T Consensus 41 ~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g--~~v~~H~~~~~~~~~~~~~g~~~ 118 (199) T 2r8c_A 41 VDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRG--TYVLAHAYTPAAIARAVRCGVRT 118 (199) T ss_dssp HHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTT--CCEEEEECSHHHHHHHHHTTCSE T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHCCCC T ss_conf 7999999999875155111101245433334443102343334678999987520--21000000022321112202111 Q ss_pred EEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---------------------CHHHHHHHHHHHHCCCEEEE Q ss_conf 6343433999999986259938999336995886---------------------99999999999987989823 Q gi|254781065|r 186 IVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---------------------SEEAIAAISRLANAGIILLS 239 (352) Q Consensus 186 v~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---------------------t~~~~~A~~~L~~~Gv~v~n 239 (352) +..-..++++.++.|++.+. .++|+-+.++. .......+++|.++|++|.- T Consensus 119 i~H~~~~~~~~i~~l~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~aGv~v~~ 190 (199) T 2r8c_A 119 IEHGNLIDDETARLVAEHGA---YVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGF 190 (199) T ss_dssp EEECTTCCHHHHHHHHHTTC---EEECCTHHHHHHHHHTTTTTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECC T ss_pred CCCCCCCCCHHHHHHHHCCC---CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCCCEEEE T ss_conf 12344321024555442165---3111101100011112212653112432101102443210001146742541 No 23 >>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} (A:) Probab=70.56 E-value=8.2 Score=19.29 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=41.7 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEE--CCCCCCCC--HHH---H-----------HHHHHHHHCCCCCEEEEEECCE Q ss_conf 78989999999999729974799972--69813249--899---9-----------9999998619981289874343 Q gi|254781065|r 125 VLSSKDTEAALAYIQEKSQIWEVIFT--GGDPLILS--HKR---L-----------QKVLKTLRYIKHVQILRFHSRV 184 (352) Q Consensus 125 ~~~~~~~~~~~~Yi~~~~eI~eVilS--GGDPl~l~--~~~---L-----------~~ll~~L~~i~hv~~IRi~TR~ 184 (352) ..+..++++.++.|.+|+.|..+|+- -|.|+--+ .+. . ...+..|..-+.+..+|+.||. T Consensus 8 ~~~~~evee~l~Ri~~~kgV~g~iI~n~~G~pirst~d~~~a~~yA~~~~~l~~~a~~~vrdldp~nel~~LRiRTkk 85 (106) T 2hz5_A 8 HGSMAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKK 85 (106) T ss_dssp -------CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESS T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 676999999999986399945999996999888772784879999999999999999999837987866999986287 No 24 >>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} (A:) Probab=70.40 E-value=5.6 Score=20.50 Aligned_cols=93 Identities=23% Similarity=0.170 Sum_probs=59.9 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEE------------- Q ss_conf 7999726981324989999999998619981289874343563434339999999862599389993------------- Q gi|254781065|r 145 WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAI------------- 211 (352) Q Consensus 145 ~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~------------- 211 (352) +.|++||=+|+-.-...=.+.+-....=..+..++|+|+..=+.-+.+++.+.+.+++....+++.+ T Consensus 2 k~IliTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~i~~~~lPV~y~~~~~~l~~~l~~~~p~~vih~Gv~~~~~~i~iE~ 81 (220) T 1a2z_A 2 KKVLITGFEPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVER 81 (220) T ss_dssp EEEEEEEECCCTTCSCCHHHHHHHHHTTCEETTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEEC T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE T ss_conf 97999834898989878599999970215799836999972154799999999999847861899986037877257998 Q ss_pred ------CCCCHHHC-------------------CHHHHHHHHHHHHCCCEE Q ss_conf ------36995886-------------------999999999999879898 Q gi|254781065|r 212 ------HANHPYEF-------------------SEEAIAAISRLANAGIIL 237 (352) Q Consensus 212 ------H~NHp~El-------------------t~~~~~A~~~L~~~Gv~v 237 (352) .+.-|++. +-.+.+.+++|+++|+++ T Consensus 82 ~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~i~~~l~~~g~~~ 132 (220) T 1a2z_A 82 IAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAITKTLRDNGIPA 132 (220) T ss_dssp EEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECCSCHHHHHHHHHHTTCCE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHCCCCE T ss_conf 787579887456678978898827899612026999999999998559995 No 25 >>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} (A:69-148,A:245-289) Probab=68.99 E-value=6.3 Score=20.12 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=25.5 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEEEC Q ss_conf 9972698132498999999999861--99812-898743 Q gi|254781065|r 147 VIFTGGDPLILSHKRLQKVLKTLRY--IKHVQ-ILRFHS 182 (352) Q Consensus 147 VilSGGDPl~l~~~~L~~ll~~L~~--i~hv~-~IRi~T 182 (352) +|.-|||| +|+.+.|..++.+|.+ |..|+ .|.+-. T Consensus 24 ~i~G~GDP-tL~~~~L~~la~~Lk~~GI~~I~G~iviD~ 61 (125) T 1w5d_A 24 YLKGKGDP-TLLPSDFDKMAEILKHSGVKVIKGNLIGDD 61 (125) T ss_dssp EEEECSCT-TCCHHHHHHHHHHHHHTTCCEESSCEEEEC T ss_pred EEEECCCC-CCCHHHHHHHHHHHHHCCCCCCCCCEEECC T ss_conf 99946699-887556999999999708750025478516 No 26 >>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} (A:) Probab=68.93 E-value=8.9 Score=19.06 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH Q ss_conf 89999999999729974799972698132498 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSH 159 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~ 159 (352) -+++.++++.++++++|+-|||+|+.+-..+. T Consensus 34 ~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~g 65 (266) T 3fdu_A 34 YLWIAKALDEADQNKDVRVVVLRGAEHDFTAG 65 (266) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCEEECC T ss_conf 99999999999758994699997898425157 No 27 >>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} (A:) Probab=68.11 E-value=9.2 Score=18.95 Aligned_cols=84 Identities=6% Similarity=0.006 Sum_probs=58.2 Q ss_pred EEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHC Q ss_conf 56343433999999986259938999336995886999999999999879898232798623457889999999999986 Q gi|254781065|r 185 PIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVEL 264 (352) Q Consensus 185 pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~ 264 (352) |...+..+-+.+++++.+..+.+++++-.= ..++..+++....+.|+.|. +++.+.+.....-......|... T Consensus 8 ~~~~~~~~~~~~~~~i~~A~~~I~i~~~~~----~~~~i~~~L~~a~~rGv~V~---ii~~~~~~~~~~~~~~~~~l~~~ 80 (155) T 1byr_A 8 GYSPEGSARVLVLSAIDSAKTSIRMMAYSF----TAPDIMKALVAAKKRGVDVK---IVIDERGNTGRASIAAMNYIANS 80 (155) T ss_dssp EEETTTHHHHHHHHHHHHCSSEEEEEESSB----CCHHHHHHHHHHHHTTCEEE---EEEESTTCCSHHHHHHHHHHHHT T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEEEEEE----CCHHHHHHHHHHHHCCCEEE---EEEEECCCCCCHHHHHHHHHHHH T ss_conf 989986099999999984882999999640----49899999999986498599---99985034550047888887750 Q ss_pred CCEEEEEECCC Q ss_conf 98242301134 Q gi|254781065|r 265 RIKPYYLHHPD 275 (352) Q Consensus 265 gV~PYYl~~~d 275 (352) |+..++..... T Consensus 81 ~v~~~~~~~~~ 91 (155) T 1byr_A 81 GIPLRTDSNFP 91 (155) T ss_dssp TCCEEEECSSS T ss_pred CCCCCCCCCCC T ss_conf 23323457775 No 28 >>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} (A:261-398) Probab=67.93 E-value=9.3 Score=18.92 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=62.0 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC----------------CCCCCCC----H-HHHHHHHHHHHCCCCCEEEEEECCEEEE Q ss_conf 99999999997299747999726----------------9813249----8-9999999998619981289874343563 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTG----------------GDPLILS----H-KRLQKVLKTLRYIKHVQILRFHSRVPIV 187 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSG----------------GDPl~l~----~-~~L~~ll~~L~~i~hv~~IRi~TR~pv~ 187 (352) +.-.+..+|+++||.|..|.-.| |-.++.. + .....+++.|.-..+--.+ =|++..+. T Consensus 11 ~nA~~ia~~L~~~p~V~~V~yPgl~~~p~~~~~~k~~~~g~g~~sf~~~~~~~~~~~f~~~L~l~~~~~Sl-Gg~~SLi~ 89 (138) T 1gc0_A 11 ANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSL-GDAESLAQ 89 (138) T ss_dssp HHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCC-SCSSCEEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEECCCC-CCCCCEEE T ss_conf 88999999997476644335522367815779863279999878986539999999999838946664567-87672201 Q ss_pred EHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH Q ss_conf 43433-----99999998625993899933699588699999999999 Q gi|254781065|r 188 DPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL 230 (352) Q Consensus 188 ~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L 230 (352) .|... +++-.+...-...-+-+.+-+.+|.+|-.+..+|+.++ T Consensus 90 ~~~~~~~~~~~~~~~~~~gi~~~liRlsvGlEd~edLi~Dl~~Al~~~ 137 (138) T 1gc0_A 90 HPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 137 (138) T ss_dssp CGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH T ss_pred CCHHCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 752105201899999866979495999970199999999999999963 No 29 >>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} (A:259-404) Probab=67.20 E-value=9.6 Score=18.82 Aligned_cols=102 Identities=11% Similarity=0.180 Sum_probs=69.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC----------------CCCCCCCH-----HHHHHHHHHHHCCCCCEEEEEEC----- Q ss_conf 99999999997299747999726----------------98132498-----99999999986199812898743----- Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTG----------------GDPLILSH-----KRLQKVLKTLRYIKHVQILRFHS----- 182 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSG----------------GDPl~l~~-----~~L~~ll~~L~~i~hv~~IRi~T----- 182 (352) +.-.+..+|+++||.|..|.-.| |-+++... +....+++ +.+.+.+++ T Consensus 11 ~nA~~la~~L~~~p~v~~V~yP~l~~~p~~~l~~~~~~~gg~~l~~~~~~~~~~~~~f~~------~l~lf~~~~slGg~ 84 (146) T 1e5e_A 11 ENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLD------NLKLITLAVSLGGC 84 (146) T ss_dssp HHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHH------TCSSSEESSCCCSS T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH------CCCCCEEEECCCCC T ss_conf 999999999984999316746888888319999975668986138887686999999997------28855485567777 Q ss_pred CEEEEEHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE Q ss_conf 4356343433-----99999998625993899933699588699999999999987989 Q gi|254781065|r 183 RVPIVDPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGII 236 (352) Q Consensus 183 R~pv~~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~ 236 (352) +..+..|..- +++-.+.+.-...-|-+.+-+.++.+|-....+|+.++.+.+.+ T Consensus 85 ~SLi~~~~~~~~~~~~~~~~~~~Gi~~~lvRlsvGlEd~edLi~Dl~~Al~~~~~~~~~ 143 (146) T 1e5e_A 85 ESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLRSHHH 143 (146) T ss_dssp SCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHCC--- T ss_pred CEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 50444862005533899999976989394999925699999999999999999864022 No 30 >>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:96-238) Probab=66.05 E-value=7.3 Score=19.67 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=43.3 Q ss_pred EECCCCCCHHHCCCCCCEECCCCCCCCCHHHHH---------HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 972743000001122330125555678989999---------99999972997479997269813249899999999986 Q gi|254781065|r 100 KLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTE---------AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLR 170 (352) Q Consensus 100 ~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~---------~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~ 170 (352) ..+..|..++...+..... ...+.+++. ...+.++..+.+++|++||| ...|..|.+.+.+.. T Consensus 66 ~~~~~~~~f~~~~~~~~~~-----~~~~~~dia~~~~~~~a~~i~~~~~~~~~~~~vvl~GG---v~~N~~L~~~l~~~l 137 (143) T 1hux_A 66 AISSTCTVFAESEVISQLS-----KGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGG---VAQNYGVRGALEEGL 137 (143) T ss_dssp CCCCCSHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEESG---GGGCHHHHHHHHHHH T ss_pred EECCCEEEEECHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CHHHHHHHHHHHHCC T ss_conf 5503125552078898875-----69968999999999999999998764177652798566---000155788887346 Q ss_pred CCC Q ss_conf 199 Q gi|254781065|r 171 YIK 173 (352) Q Consensus 171 ~i~ 173 (352) +.+ T Consensus 138 ~~~ 140 (143) T 1hux_A 138 GVE 140 (143) T ss_dssp CSC T ss_pred CCE T ss_conf 706 No 31 >>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.25A {Homo sapiens} (A:1-248,A:409-463) Probab=64.70 E-value=4.8 Score=20.94 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=52.2 Q ss_pred CEEEEEECCCCCCHHHC---CCCCCEE--CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 53799972743000001---1223301--255556789899999999997299747999726981324989999999998 Q gi|254781065|r 95 DRILLKLLHVCPVYCRF---CFRREMV--GSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTL 169 (352) Q Consensus 95 ~rvLl~~t~~C~~~Cry---CfR~~~~--~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L 169 (352) +.|+|++...+..-+.. +|+.... +-.+... ...+-+.+-+++..|+.|+-|+++||.. +-..+.+- T Consensus 167 NavILKp~~~a~~s~~~l~~l~~~Al~~~g~~~~~v-~~~~~~~v~~ll~~~~~id~V~ftGs~~-------~g~~V~~~ 238 (303) T 2h5g_A 167 NGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQ-LVNTREEVEDLCRLDKXIDLIIPRGSSQ-------LVRDIQKA 238 (303) T ss_dssp CEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEE-ECCTTCCC-------CCCSEEEEESCHH-------HHHHHHHH T ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHHHCCCCCCEEEECCCCH-------HHHHHHHH T ss_conf 852532717788899999999975445408844788-6230258999971658875899805750-------78899984 Q ss_pred H-C---CCC-CEEEEEECCEEEEEHHHCC Q ss_conf 6-1---998-1289874343563434339 Q gi|254781065|r 170 R-Y---IKH-VQILRFHSRVPIVDPQRIN 193 (352) Q Consensus 170 ~-~---i~h-v~~IRi~TR~pv~~P~Rit 193 (352) . . |.| |.+=++|.|.|+-+.+-.| T Consensus 239 At~iPV~~~gist~k~hargp~g~~~l~~ 267 (303) T 2h5g_A 239 AKGIPVXGHSISTSRIHARGPVGLEGLLT 267 (303) T ss_dssp CSSSCBCSCSEECCSSSCCEECCGGGGEE T ss_pred CCCCCEEEECEECCCCCCCCCCCHHHHCE T ss_conf 45874799457548777899777799478 No 32 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:113-234) Probab=64.38 E-value=5.2 Score=20.68 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=66.8 Q ss_pred HHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCC-CCCHHHHHHHHHHHHHCCCEE Q ss_conf 4339999999862599389993369958869999999999998798982327986234-578899999999999869824 Q gi|254781065|r 190 QRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGI-NDDPEILANLMRTFVELRIKP 268 (352) Q Consensus 190 ~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgV-ND~~~~l~~L~~~L~~~gV~P 268 (352) |-++++.++.+.+.. -..++.+|++.++++|..+.-.+=++-|- +++.+.+.+..+.+.+++..= T Consensus 10 eS~~~~vl~~~~r~~--------------~~~~~~~~~~~l~~~g~~~~i~~~~i~GlPget~e~~~~t~~~l~~l~~d~ 75 (122) T 2qgq_A 10 QHGSDKILKLXGRTK--------------SSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDK 75 (122) T ss_dssp BCSCHHHHHHTTCCS--------------CHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSE T ss_pred CCCCHHHHHHHHCCC--------------CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCH T ss_conf 446677777764376--------------344323577678774899638877876179887378999899987649881 Q ss_pred EEEECCCCCCCCCCCCC----CHHHHHHHHHHHHHHC Q ss_conf 23011345765210118----6999999999999828 Q gi|254781065|r 269 YYLHHPDLAAGTSHFRL----TIEEGQKIVASLKEKI 301 (352) Q Consensus 269 YYl~~~d~v~G~~hf~v----~~~~~~~i~~~l~~~l 301 (352) =++|.+.+.+|+.-++- +.....+.++.+...+ T Consensus 76 i~~~~~~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~ 112 (122) T 2qgq_A 76 LGAFVYSDEEGTVAFNLKEKVDPEXAKRRQEELLLLQ 112 (122) T ss_dssp EEEEECCC-----------CCCHHHHHHHHHHHHHHH T ss_pred HHCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 0021023222201200001245023466777767765 No 33 >>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:54-162) Probab=63.84 E-value=11 Score=18.39 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=45.3 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 9899999999997299747999726981-324-----9899999999986199812898743 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLKTLRYIKHVQILRFHS 182 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~~L~~i~hv~~IRi~T 182 (352) ....+++..+.|++.|+|.++-..-||. +++ +.+.|..++.++.+++.|..++=+. T Consensus 22 ~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~l~v~~~d~~~l~~~i~~~~~~~gv~~~~T~i 83 (109) T 3i4p_A 22 SIEWLKRFSEVVSEFPEVVEFYRXSGDVDYLLRVVVPDIAAYDAFYKRXIAKIEIRDVSSAF 83 (109) T ss_dssp CHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHHHHHHCCCSEEEEEE T ss_pred CHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 46779999999856984899999628999899999899999999999973679944899999 No 34 >>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=63.44 E-value=6.2 Score=20.17 Aligned_cols=43 Identities=23% Similarity=0.108 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999999998798982327------------9862345788999999999998 Q gi|254781065|r 221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE 263 (352) Q Consensus 221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~ 263 (352) -|+.+||.=|+.+|.+-+.|. |=-..=.=+.+.+..|+++|-. T Consensus 21 iEA~eAC~WLraaGFpqYAqlyEd~~FPidi~~VkkDh~fLd~D~l~sL~RRL~t 75 (91) T 2dky_A 21 IEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNT 75 (91) T ss_dssp HHHHHHHHHHHHHTCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 9899999999983884899986503687303776137653057789999999999 No 35 >>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:126-286) Probab=61.82 E-value=8.3 Score=19.26 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=28.6 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE Q ss_conf 9999999972997479997269813249899999999986199812 Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQ 176 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~ 176 (352) +.+.+.++.+...++.|++||| +..|..|.+-|.+......++ T Consensus 111 l~~~~~~~~~~~~~~~lvlsGG---Va~N~~l~~~l~~~l~~~~~~ 153 (161) T 3en9_A 111 LTEITERALAHTNKGEVMLVGG---VAANNRLREMLKAMCEGQNVD 153 (161) T ss_dssp HHHHHHHHHHHHTCSEEEEESG---GGGCHHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHCCCEEEEEEE---HHHHHHHHHHHHHHHHHCCCE T ss_conf 9999999999719398999833---998899999999999876999 No 36 >>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* (A:260-398) Probab=61.40 E-value=12 Score=18.10 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=61.8 Q ss_pred HHHHHHHHHHHHCCCEEEEEEE----------------CCCCCCCCH-----HHHHHHHHHHHCCCCCEEEEEEC----- Q ss_conf 9999999999729974799972----------------698132498-----99999999986199812898743----- Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFT----------------GGDPLILSH-----KRLQKVLKTLRYIKHVQILRFHS----- 182 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilS----------------GGDPl~l~~-----~~L~~ll~~L~~i~hv~~IRi~T----- 182 (352) +.-.+..+|+++||+|..|.-. ||=.++... +....+ ++..+.+++++ T Consensus 11 ~nA~~la~~L~~~p~V~~V~yP~l~~~~~~~~~~~~~~ggg~~lsf~l~~~~~~~~~f------~~~l~lf~~~~s~G~~ 84 (139) T 2rfv_A 11 ENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRM------INSVELCLLAVSLGDT 84 (139) T ss_dssp HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH------HTTCSSSEECSCCSSS T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHH------HHCCCCCCEEECCCCC T ss_conf 9999999999748996757178878996512223446778759999966999999999------9728936241571643 Q ss_pred CEEEEEHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH Q ss_conf 4356343433-----99999998625993899933699588699999999999 Q gi|254781065|r 183 RVPIVDPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL 230 (352) Q Consensus 183 R~pv~~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L 230 (352) +..+..|... +++-.+...-...-+-+.+-+.++.+|-....+|+.+. T Consensus 85 ~SLi~~~~~~~~~~~~~~~~~~~Gi~~~liRisvGlEd~~dLi~Dl~~Al~~~ 137 (139) T 2rfv_A 85 ETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 137 (139) T ss_dssp SCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH T ss_conf 30323763126545899999965989396999761099999999999999872 No 37 >>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:58-151) Probab=60.58 E-value=13 Score=18.00 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 8999999999972997479997269813------249899999999986199812898743 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPL------ILSHKRLQKVLKTLRYIKHVQILRFHS 182 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl------~l~~~~L~~ll~~L~~i~hv~~IRi~T 182 (352) ....++..+.|++.|+|.++-...|+-= .-+.+.+..++++|..++.|..++-+- T Consensus 20 ~~~~~~v~~~l~~~p~V~~~~~~sG~~d~~~~v~~~d~~~l~~~i~~l~~~~gv~~~~t~i 80 (94) T 2cyy_A 20 AGKYSEVASNLAKYPEIVEVYETTGDYDXVVKIRTKNSEELNNFLDLIGSIPGVEGTHTXI 80 (94) T ss_dssp TTCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEEE T ss_pred CCCCHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 5320033444047863167101578876999999799999999999984689940899999 No 38 >>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259) Probab=59.99 E-value=8.3 Score=19.26 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=38.9 Q ss_pred CCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 69958869999999999998798982327986234578899999999999869824230 Q gi|254781065|r 213 ANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYL 271 (352) Q Consensus 213 ~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl 271 (352) +.+-.++-|.+.+++++|+++|+++.-=| |.+......+.++|-.+|+.+|.- T Consensus 18 l~~~~~~~pg~~e~L~~L~~~G~~~~iiT------N~~~~~~~~~~~~L~~~Gl~~~f~ 70 (140) T 2ho4_A 18 LHIEDAAVPGAQEALKRLRATSVXVRFVT------NTTKETKKDLLERLKKLEFEISED 70 (140) T ss_dssp SCC---CCTTHHHHHHHHHTSSCEEEEEE------CCSSCCHHHHHHHHHHTTCCCCGG T ss_pred EEECCCCCCCHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHHCCCCCCCE T ss_conf 28199068009999999998699889994------899899999999986304677700 No 39 >>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* (A:1-133) Probab=58.51 E-value=14 Score=17.76 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 899999999997299747999726981324989999999998619 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) .+.++++++..++...| |+++.|||++.+. -.++++.+++- T Consensus 83 ~~~~~~i~~~~~~G~~V--~~l~~GDP~i~~~--~~~l~~~~~~~ 123 (133) T 2e0n_A 83 AANYASMAEEVQAGRRV--AVVSVGDGGFYST--ASAIIERARRD 123 (133) T ss_dssp GGGHHHHHHHHHTTCEE--EEEESBCTTBSCT--HHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCCE--EEECCCCCCCCCC--HHEECCCCCCC T ss_conf 76556789986089714--7863544321142--10110112344 No 40 >>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A (A:) Probab=58.50 E-value=11 Score=18.45 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=54.8 Q ss_pred EEEEECCCCCCCCHHHHH-HHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEEC------------ Q ss_conf 999726981324989999-9999986199812898743435634343399999998625993899933------------ Q gi|254781065|r 146 EVIFTGGDPLILSHKRLQ-KVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIH------------ 212 (352) Q Consensus 146 eVilSGGDPl~l~~~~L~-~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H------------ 212 (352) .|++||=+|+---...=. .+++.|.+. .+..++|.|...=+.-..+.+.+.+.+++....+++.+- T Consensus 2 ~IliTGF~PF~~~~~NpS~~~~~~L~~~-~~~~~~i~~~~lpV~y~~~~~~i~~~~~~~~p~~vih~Gv~~~~~~i~lE~ 80 (208) T 1x10_A 2 KVLVTGFEPFGGEKINPTERIAKDLDGI-KIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIER 80 (208) T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTC-EETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSEEEEC T ss_pred EEEEEEECCCCCCCCCHHHHHHHHCCCC-CCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE T ss_conf 8999800798989878689999856457-888717999870022899999999999857897699996038876078886 Q ss_pred -------CCCHHHC-------------------CHHHHHHHHHHHHCCCEEE Q ss_conf -------6995886-------------------9999999999998798982 Q gi|254781065|r 213 -------ANHPYEF-------------------SEEAIAAISRLANAGIILL 238 (352) Q Consensus 213 -------~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~ 238 (352) ++-|++. +-.+.+.+++|+++|+++. T Consensus 81 ~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~l~~~l~~~g~~~~ 132 (208) T 1x10_A 81 IAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKIMKKLHERGIPAY 132 (208) T ss_dssp EEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHTTCCEE T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEE T ss_conf 3771799750367787469986557895241069999999998886299816 No 41 >>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrinogen-III methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} (A:1-130) Probab=56.62 E-value=15 Score=17.55 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 899999999997299747999726981324989999999998619 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) .+..+.+++++++...| ++++.|||++.+. ..++++++.+- T Consensus 79 ~~~~~~i~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~~ 119 (130) T 1s4d_A 79 RDISLRLVELARAGNRV--LRLKGGDPFVFGR--GGEEALTLVEH 119 (130) T ss_dssp HHHHHHHHHHHHTTCCE--EEEESBCTTSSSS--HHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCCCE--EEEECCCCCCHHH--HHHHHHHHHHC T ss_conf 67889999999779918--9994789840466--89999999852 No 42 >>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} (A:) Probab=55.84 E-value=7.3 Score=19.66 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) ..++.++++.++++++++-||++|+.+ T Consensus 35 ~~~l~~~l~~~~~d~~~~~vvi~g~~~ 61 (363) T 3bpt_A 35 IRQIYPQLKKWEQDPETFLIIIKGAGG 61 (363) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEETTS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999998499966999965899 No 43 >>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:122-263) Probab=55.64 E-value=15 Score=17.44 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=82.7 Q ss_pred HHHHHHHHHHH--CCCE----EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE--EEEECCEEEEEHHHCCHHHHHHHH Q ss_conf 99999999972--9974----799972698132498999999999861998128--987434356343433999999986 Q gi|254781065|r 130 DTEAALAYIQE--KSQI----WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI--LRFHSRVPIVDPQRINPELIQCLK 201 (352) Q Consensus 130 ~~~~~~~Yi~~--~~eI----~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~--IRi~TR~pv~~P~Rit~~L~~~l~ 201 (352) .-..+.+|+.+ |..+ +=.+++|..-...+..++.-+.+.+++-+.... +..+. ..++..-.....+|. T Consensus 5 ~~~~a~~~L~~~G~r~~~~~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ 80 (142) T 3h75_A 5 GYRXLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGE----WNRERAYRQAQQLLK 80 (142) T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHC----CCHHHHHHHHHHHHH T ss_conf 9999999998635553388647999957867727777666553344307875411000111----114799999999997 Q ss_pred HCCCCEEEEECCCCHHHCC-HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 2599389993369958869-99999999999879898232798623457889999999999986982423 Q gi|254781065|r 202 EAGKPVYIAIHANHPYEFS-EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY 270 (352) Q Consensus 202 ~~~~~~~iv~H~NHp~Elt-~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY 270 (352) +...+-.|.+ .+ ..+..+++.+++.|+.+-.+-.+ -|.+|++.++..+..--+..=..|+| T Consensus 81 ~~~~~~ai~~-------~~d~~a~g~~~~l~~~g~~vp~dv~v-vgfD~~~~~~~~~~~p~lt~i~q~~y 142 (142) T 3h75_A 81 RYPKTQLVWS-------ANDEXALGAXQAARELGRKPGTDLLF-SGVNSSPEALQALIDGKLSVLEAGHF 142 (142) T ss_dssp HCTTEEEEEE-------SSHHHHHHHHHHHHHTTCCBTTTBEE-EEESCCHHHHHHHHHTSSCEEEECGG T ss_pred HCCCCCEEEE-------CCHHHHHHHHHHHHHCCCCCCCCEEE-EEECCCHHHHHHHHCCCEEEEECCHH T ss_conf 4999739998-------87799999999999759999998599-99898599999875798059977908 No 44 >>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural genomics, JCSG, protein structure initiative, PSI; 2.29A {Saccharomyces cerevisiae} (A:1-238,A:414-468) Probab=55.14 E-value=5.3 Score=20.66 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=42.4 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC---CCC-CEEEEEECCEEEEEHHHCC Q ss_conf 9999999729974799972698132498999999999861---998-1289874343563434339 Q gi|254781065|r 132 EAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY---IKH-VQILRFHSRVPIVDPQRIN 193 (352) Q Consensus 132 ~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~---i~h-v~~IRi~TR~pv~~P~Rit 193 (352) ++..+.+..|+.|+=|+++||.. +-+.+.+-.+ |.| |.+=++|-|.|+.+.+-.| T Consensus 199 ~~v~~~l~~~~~id~IiftGs~~-------~~~~V~~~A~vPvi~~gist~k~hargp~g~~~l~~ 257 (293) T 1vlu_A 199 QDVSDLLDQDEYIDLVVPRGSNA-------LVRKIKDTTKIPVLGHAISTSKIHARGPVGLDGLVS 257 (293) T ss_dssp --CGGGGGCTTTCCEEEEESCHH-------HHHHHHHTCCSCBTTBC-----------CCSGGGEE T ss_pred HHHHHHHHCCCCCCEEEECCCCC-------CEEEEECCCCCCEEEECEECCCCCCCCCCCHHHHCE T ss_conf 77888874068775689556640-------202200024530787667558778899867688555 No 45 >>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} (A:1-249) Probab=55.07 E-value=8.3 Score=19.25 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 89999999999729974799972698132 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI 156 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~ 156 (352) .+++.++++.++.+++++=||+||.++-. T Consensus 33 ~~~l~~al~~~~~d~~v~~vi~tg~g~~f 61 (249) T 1dci_A 33 WRELVECFQKISKDSDCRAVVVSGAGKMF 61 (249) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEESTTCS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 99999999999739996699996346653 No 46 >>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} (A:1-209) Probab=54.49 E-value=16 Score=17.32 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999999729974799972698 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) -.++.++++.++++++++=||+|||. T Consensus 35 ~~~l~~~l~~~~~d~~v~~vv~~~~~ 60 (209) T 3l3s_A 35 IAALHDALRRAXGDDHVHVLVIHGPG 60 (209) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEECCS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 99999999999648996699997899 No 47 >>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} (A:1-221) Probab=53.55 E-value=13 Score=17.82 Aligned_cols=106 Identities=9% Similarity=0.083 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH---------------------HHHHHHHHHHHCCCCCEE--------- Q ss_conf 89999999999729974799972698132498---------------------999999999861998128--------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSH---------------------KRLQKVLKTLRYIKHVQI--------- 177 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~---------------------~~L~~ll~~L~~i~hv~~--------- 177 (352) ..++.++++.++++++|+=||+||+++---+. ..+..++..+...|-.-+ T Consensus 33 ~~~l~~~~~~~~~d~~v~~vi~~g~~~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~G 112 (221) T 3i47_A 33 LTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFG 112 (221) T ss_dssp HHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEET T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEECC T ss_conf 99999999999748991699991567765567304443012223211101367899999999982898789998998767 Q ss_pred ----------EEEECCEEEEE-HH----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHH Q ss_conf ----------98743435634-34----------------3399999998625993--------8999336995886999 Q gi|254781065|r 178 ----------LRFHSRVPIVD-PQ----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEE 222 (352) Q Consensus 178 ----------IRi~TR~pv~~-P~----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~ 222 (352) +||.++--.+. |+ ++-......+--.+++ .-++.++--+.|+.++ T Consensus 113 gG~~lal~~D~~ia~~~a~f~~~~~~~g~~~~~~~~~l~~~~g~~~a~~~ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 192 (221) T 3i47_A 113 GGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEF 192 (221) T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHH T ss_pred CCHHHHHCCCCCCCCCCCEEECCCEEEEECCCCCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECHHHHHHH T ss_conf 62255505230246899799774023564576321332230258999999863897889999877991086084799999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999987 Q gi|254781065|r 223 AIAAISRLANA 233 (352) Q Consensus 223 ~~~A~~~L~~~ 233 (352) +.+-.++|.+. T Consensus 193 a~~~a~~l~~~ 203 (221) T 3i47_A 193 TLKYASQISNN 203 (221) T ss_dssp HHHHHHHHHTS T ss_pred HHHHHHHHHCC T ss_conf 99999999778 No 48 >>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} (A:) Probab=53.40 E-value=6.4 Score=20.08 Aligned_cols=43 Identities=23% Similarity=0.113 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999999998798982327------------9862345788999999999998 Q gi|254781065|r 221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE 263 (352) Q Consensus 221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~ 263 (352) -|+.+||.=|+.+|.+-+.|. |=-..--=|.+.+..|+++|-. T Consensus 19 iEA~eAC~WLraaGFpqYAqlyEd~~FPidi~~Vkkdh~fLd~Dsl~sL~RRL~t 73 (81) T 2h80_A 19 IEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNT 73 (81) T ss_dssp HHHHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 9899999999983884899986603787303877237663167789999999999 No 49 >>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis} (A:) Probab=52.94 E-value=13 Score=17.78 Aligned_cols=153 Identities=18% Similarity=0.114 Sum_probs=79.1 Q ss_pred EEEEEECCCCCCCCHHHHHH-HHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEE--------------- Q ss_conf 79997269813249899999-99998619981289874343563434339999999862599389--------------- Q gi|254781065|r 145 WEVIFTGGDPLILSHKRLQK-VLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVY--------------- 208 (352) Q Consensus 145 ~eVilSGGDPl~l~~~~L~~-ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~--------------- 208 (352) +.|++||=+|+---...=.+ +++.|.. ..+..++|+++..=+.=..+.+.+-+.+.+....++ T Consensus 2 k~iliTGF~pF~~~~~NpS~~i~~~L~~-~~~~~~~i~~~~lpV~y~~~~~~l~~~~~~~~pd~vih~Gv~~~~~~i~lE 80 (215) T 3lac_A 2 KTVLLTGFDPFGGESINPAWEVAKSLHE-KTIGEYKIISKQVPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPDITIE 80 (215) T ss_dssp EEEEEEEECCCTTCSCCHHHHHHHTTTT-CEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEEEECCEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEE T ss_conf 9799952589898986849999986223-358982499985643389899999999983799689998635897607789 Q ss_pred ---EE-ECCCCHHHC-------------------CHHHHHHHHHHHHCCCEEE-ECHHHHHCCCCCHHHHHHHHHHHHH- Q ss_conf ---99-336995886-------------------9999999999998798982-3279862345788999999999998- Q gi|254781065|r 209 ---IA-IHANHPYEF-------------------SEEAIAAISRLANAGIILL-SQSVLLKGINDDPEILANLMRTFVE- 263 (352) Q Consensus 209 ---iv-~H~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~-nQsVLLkgVND~~~~l~~L~~~L~~- 263 (352) ++ ..+.-|++. +-...+.++++++.|+++. +... |=-=+-.++-...+.+.. T Consensus 81 ~~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~T~lp~~~i~~~l~~~g~~~~iS~dA---G~yLCN~i~Y~sl~~~~~~ 157 (215) T 3lac_A 81 RVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPXKAIVKKLQEEGIPASVSQTA---GTFVXNHLFYGLXHELEKH 157 (215) T ss_dssp CEEESCBCCSSCCTTSCCCSSBCSSTTSCSEEECCSCHHHHHHHHHHTTCCEEEESCC---CSSHHHHHHHHHHHHHGGG T ss_pred EEEECCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCHHHHHHHHHHCCCCEEEECCC---CHHHHHHHHHHHHHHHHHH T ss_conf 7231577787799888876995275898634665899999999988539974882785---1106559999999999984 Q ss_pred -CCCEEEEEECCCCC----CCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf -69824230113457----652101186999999999999828 Q gi|254781065|r 264 -LRIKPYYLHHPDLA----AGTSHFRLTIEEGQKIVASLKEKI 301 (352) Q Consensus 264 -~gV~PYYl~~~d~v----~G~~hf~v~~~~~~~i~~~l~~~l 301 (352) ..+.--.+|.+..- .....+..+++...+.++.+-+.+ T Consensus 158 ~~~~~~~FiHVP~~~~~~~~~~~~~~~~l~~~~~av~~~i~~~ 200 (215) T 3lac_A 158 DTKXKGGFIHIPFLPEQASNYPGQPSXSLSTIRKGIELAVEVT 200 (215) T ss_dssp TTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 8998589997489725530579989878999999999999999 No 50 >>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} (A:1-207) Probab=52.13 E-value=16 Score=17.26 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCC------------H-------HHHHHHHHHHHCCCC Q ss_conf 999999999972997479997269813249------------8-------999999999861998 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILS------------H-------KRLQKVLKTLRYIKH 174 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~------------~-------~~L~~ll~~L~~i~h 174 (352) +++.++++.++++++|+-||++|+.|-..+ + ..+..++..|...|- T Consensus 39 ~~l~~~l~~~~~d~~v~~vii~g~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (207) T 3kqf_A 39 EELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGXNEEQVRHAVSXIRTTXEXVEQLPQ 103 (207) T ss_dssp HHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSS T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCC T ss_conf 99999999997499967899963878746435301233102112222233223230110104665 No 51 >>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} (A:1-125) Probab=51.96 E-value=17 Score=17.04 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=29.1 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 98999999999972997479997269813249899999999986199 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK 173 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~ 173 (352) ..+.+++.+.-+++...+= ++++||||+.-+. ..+++..+.+.. T Consensus 74 ~~~~~~~~i~~~~~g~~vv-~~~~gg~P~~y~~--~~~l~~~~~~~g 117 (125) T 3kwp_A 74 TQERIPQLIAKLKQGXQIA-QVSDAGXPSISDP--GHELVNACIDAH 117 (125) T ss_dssp HHHHHHHHHHHHHTTCEEE-EECSSBCTTSSHH--HHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCH--HHHHHHHHHCCC T ss_conf 1657999999998599789-9976888510366--999999851875 No 52 >>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:1-104,A:174-218) Probab=51.16 E-value=7.2 Score=19.68 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=21.1 Q ss_pred HCCCCCHHHHHHHHHHHHHCC-------CEEEEEE Q ss_conf 234578899999999999869-------8242301 Q gi|254781065|r 245 KGINDDPEILANLMRTFVELR-------IKPYYLH 272 (352) Q Consensus 245 kgVND~~~~l~~L~~~L~~~g-------V~PYYl~ 272 (352) -|||-+++.|.+-..++|+.| +.||||- T Consensus 101 igVs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149) T 2a6a_A 101 APLNISPAVLVEESERLFREKKTIHYYEIEPLYLQ 135 (149) T ss_dssp EEECCCHHHHHHHHHHHHHTTCCBCGGGTTHHHHC T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCC T ss_conf 14674999999999999985999980408477189 No 53 >>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:57-150) Probab=50.73 E-value=12 Score=18.01 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=37.4 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHHHHHHCCCCCEE Q ss_conf 9999999999729974799972698-1324-----98999999999861998128 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVLKTLRYIKHVQI 177 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll~~L~~i~hv~~ 177 (352) ..+++..+-|++.|+|.++-...|+ -+++ +.+.|..++++|..+++|++ T Consensus 23 ~~~~~~~~~l~~~peV~~~~~vtG~~d~i~~v~~~~~~~l~~~~~~l~~~~~v~~ 77 (94) T 2w25_A 23 SQPDDAPARLEHIEEVESCYSVAGEASYVLLVRVASARALEDLLQRIRTTANVRT 77 (94) T ss_dssp TSCCCHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHHHHHHTEEE T ss_pred CHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEE T ss_conf 1067899997507778465541899789999998999999999998716898679 No 54 >>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} (A:1-184) Probab=50.27 E-value=4.5 Score=21.16 Aligned_cols=90 Identities=7% Similarity=0.035 Sum_probs=56.2 Q ss_pred EEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHH Q ss_conf 87434356343433999999986259938999336995886999999999999879898232798623457889999999 Q gi|254781065|r 179 RFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLM 258 (352) Q Consensus 179 Ri~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~ 258 (352) .+.+..|...+..+.+.+++.++...+.+++.+-+=-+. .+.+..+|+....+.||.|. +++.+.++....-...+ T Consensus 10 ~~~~~~p~~~~~~~~~~~~~~I~~Ak~~i~I~~~~~~~~-~~~~i~~aL~~a~~rGV~V~---ii~~~~~~~~~~~~~~~ 85 (184) T 2c1l_A 10 VYATGRPKGLIGMLENVWVSNHTPGEGTLYLISGFSNYN-GGVRFYETFTEHINQGGRVI---AILGGSTSQRLSSRQVV 85 (184) T ss_dssp TEESSSCCSHHHHHHHHHTTTCCTTSSEEEEEESSBCGG-GTTTTHHHHHHHHHTTCEEE---EEEECCSSSCCBBHHHH T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-CCEEEEHHHHHHHHCCCEEE---EEECCCCCCCCCHHHHH T ss_conf 133488731899999887604778881299985233457-86665188999874587599---99547520224288899 Q ss_pred HHHHHCCCEEEEEE Q ss_conf 99998698242301 Q gi|254781065|r 259 RTFVELRIKPYYLH 272 (352) Q Consensus 259 ~~L~~~gV~PYYl~ 272 (352) ..|...|+.-++.. T Consensus 86 ~~l~~~~~~v~~~~ 99 (184) T 2c1l_A 86 EELLNRGVEVHIIN 99 (184) T ss_dssp HHHHHTTCEEEEEE T ss_pred HHHHHCCCEEEEEC T ss_conf 99972886599961 No 55 >>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:1-85,A:153-227) Probab=49.79 E-value=14 Score=17.67 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=38.0 Q ss_pred CCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE-----CCCCCCCCCCCCCCH Q ss_conf 699588699999999999987989823279862345788999999999998698242301-----134576521011869 Q gi|254781065|r 213 ANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLH-----HPDLAAGTSHFRLTI 287 (352) Q Consensus 213 ~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~-----~~d~v~G~~hf~v~~ 287 (352) +++...++|++.+|+++|++.|+.+--=| +.+......+++. +++..|.+. ..++-+...++...- T Consensus 17 l~~~~~i~~~~~~aL~~L~~~Gi~i~iaT------Gr~~~~v~~~~~~---l~i~~~~i~~NGa~v~~~~~~~~~~~~~K 87 (160) T 1l6r_A 17 TDRDRLISTKAIESIRSAEKKGLTVSLLS------GNVIPVVYALKIF---LGINGPVFGENGGIMFDNDGSIKKFFSDK 87 (160) T ss_dssp BCTTSCBCHHHHHHHHHHHHTTCEEEEEC------SSCHHHHHHHHHH---HTCCSCEEEGGGTEEECTTSCEEESSCSH T ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEC------CCCCHHHHHHHHH---CCCCCEEEECCCEEEEECCCCEEEECCCH T ss_conf 58999359999999999997799899984------8860215899997---18874078437559996894178744645 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781065|r 288 EEGQK 292 (352) Q Consensus 288 ~~~~~ 292 (352) ..+++ T Consensus 88 ~~~~~ 92 (160) T 1l6r_A 88 AFAVN 92 (160) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 76652 No 56 >>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} (A:1-227) Probab=49.78 E-value=18 Score=16.84 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 8999999999972997479997269813 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPL 155 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl 155 (352) -.++.++++.++++++|+=|||+|..|- T Consensus 37 ~~~l~~al~~~~~d~~v~~vil~g~g~~ 64 (227) T 3gkb_A 37 MRELRTVLTTLADDSSVRVIVFSSADPE 64 (227) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEESSSS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999999973999369999644555 No 57 >>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:56-144) Probab=49.76 E-value=18 Score=16.81 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=39.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHHHHHHCCCCCEEE Q ss_conf 9899999999997299747999726981324------989999999998619981289 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVLKTLRYIKHVQIL 178 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll~~L~~i~hv~~I 178 (352) ....+++..+.|++.|+|.++-...|++=.+ +.+.|..+|+++..|.++++- T Consensus 19 ~~~~~~~~~~~l~~~peV~~~~~vsG~~d~i~~v~~~d~~~l~~~l~~i~~i~~~~T~ 76 (89) T 2cfx_A 19 KNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTH 76 (89) T ss_dssp GGGCHHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTTTEEEEEE T ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEE T ss_conf 2487999999872398621668963689899999989999999999966885644899 No 58 >>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:78-171) Probab=48.95 E-value=19 Score=16.73 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=43.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 89999999999729974799972698132------4989999999998619981289874 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVLKTLRYIKHVQILRFH 181 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll~~L~~i~hv~~IRi~ 181 (352) ...+++..+.|++.|+|.++-.+-||-=. -+.+.+..++++|..++.|...+-. T Consensus 20 ~~~~~~~~~~l~~~p~V~~~~~~sG~~dl~~~v~~~~~~~l~~~i~~l~~~~gv~~~~t~ 79 (94) T 2e1c_A 20 AGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM 79 (94) T ss_dssp TTCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEEE T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 410223345414797478840157888699999979999999999998468994089999 No 59 >>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} (A:) Probab=48.83 E-value=19 Score=16.71 Aligned_cols=168 Identities=9% Similarity=-0.064 Sum_probs=74.9 Q ss_pred CHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHH---HCCCCCEEEEEECCEEEEEHH--HC---CHHHH Q ss_conf 9899999999997299-747999726981324989999999998---619981289874343563434--33---99999 Q gi|254781065|r 127 SSKDTEAALAYIQEKS-QIWEVIFTGGDPLILSHKRLQKVLKTL---RYIKHVQILRFHSRVPIVDPQ--RI---NPELI 197 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~-eI~eVilSGGDPl~l~~~~L~~ll~~L---~~i~hv~~IRi~TR~pv~~P~--Ri---t~~L~ 197 (352) +.+.+++..+.++++- +|.-+-.+..|+-. ....++.+...+ ..+. .+.+++|+-..-.... ++ -.+++ T Consensus 49 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~lg-~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 126 (272) T 2q02_A 49 DDLNYNQVRNLAEKYGLEIVTINAVYPFNQL-TEEVVKKTEGLLRDAQGVG-ARALVLCPLNDGTIVPPEVTVEAIKRLS 126 (272) T ss_dssp TTCCHHHHHHHHHHTTCEEEEEEEETTTTSC-CHHHHHHHHHHHHHHHHHT-CSEEEECCCCSSBCCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 7777999999999839966886113677785-5889998999999999862-8789996388875024999999999999 Q ss_pred HHHHHCCCCEEEEECCCCHHHCC---HHHHHHHHHHHH-CCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 99862599389993369958869---999999999998-79898232798623457889999999999986982423011 Q gi|254781065|r 198 QCLKEAGKPVYIAIHANHPYEFS---EEAIAAISRLAN-AGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH 273 (352) Q Consensus 198 ~~l~~~~~~~~iv~H~NHp~Elt---~~~~~A~~~L~~-~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~ 273 (352) +..++++..+.+-.| +++..+. +++.+.++.+.. .|+ .+.-+-+...-.|..+.+.++. +-+=+|+|. T Consensus 127 ~~a~~~Gv~~~~E~~-~~~~~~~~~~~~~~~l~~~~~~~~gi-~~D~~h~~~~~~~~~~~~~~~~------~~~i~~vHi 198 (272) T 2q02_A 127 DLFARYDIQGLVEPL-GFRVSSLRSAVWAQQLIREAGSPFKV-LLDTFHHHLYEEAEKEFASRID------ISAIGLVHL 198 (272) T ss_dssp HHHHTTTCEEEECCC-CSTTCSCCCHHHHHHHHHHHTCCCEE-EEEHHHHHHCTTHHHHHHHHCC------GGGEEEEEE T ss_pred HHHHHCCEEEEEEEC-CCCCCCCCCHHHHHHHHHHCCCCEEE-ECCHHHHHHHCCCHHHHHHHHC------CCCEEEEEE T ss_conf 875214838999846-76676448899999999860997233-1201567870898699998727------181999986 Q ss_pred CCCCC-------CCCCCCCCHHHH----HHHHHHHHHHCCCCCC Q ss_conf 34576-------521011869999----9999999982888654 Q gi|254781065|r 274 PDLAA-------GTSHFRLTIEEG----QKIVASLKEKISGLCQ 306 (352) Q Consensus 274 ~d~v~-------G~~hf~v~~~~~----~~i~~~l~~~lsG~~~ 306 (352) .|-.. +..++.++..+| ..+++.|+. .||.. T Consensus 199 ~d~~~~~~~~~~~~~~~~~~~g~G~~d~~~i~~~L~~--~g~~g 240 (272) T 2q02_A 199 SGVEDTRPTEALADEQRIXLSEKDVXQNYQQVQRLEN--XGYRG 240 (272) T ss_dssp CBCCCCSCGGGCCGGGCBCCCTTCSSCHHHHHHHHHH--TTCCS T ss_pred ECCCCCCCHHHHCCCCEECCCCCCCCCHHHHHHHHHH--CCCCC T ss_conf 3268987505542675202699973679999999998--09974 No 60 >>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:213-330) Probab=48.45 E-value=19 Score=16.68 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=30.3 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 9899999999997299747999726981324989999999998619 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) ..+.++..++.+++...+ ++++.|||+..+. ..++++.+.+- T Consensus 67 ~~~~~~~~~~~~~~g~~v--~~l~~GDP~~~~~--~~~l~~~~~~~ 108 (118) T 1pjq_A 67 QEEINQILLREAQKGKRV--VRLKGGDPFIFGR--GGEELETLCHA 108 (118) T ss_dssp THHHHHHHHHHHHTTCEE--EEEESBCTTTSSS--HHHHHTTTTTT T ss_pred HHHHHHHHHHHHHCCCEE--EEECCCCCCCCHH--HHHHHHHHHCC T ss_conf 999999999999759859--9976887321067--99999985048 No 61 >>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} (A:195-331) Probab=48.40 E-value=15 Score=17.36 Aligned_cols=101 Identities=11% Similarity=0.171 Sum_probs=61.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEE----------------ECCCCCCC----CHHHHHHHHHHHHCCCCCEEEEEECCEEEEE Q ss_conf 999999999972997479997----------------26981324----9899999999986199812898743435634 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIF----------------TGGDPLIL----SHKRLQKVLKTLRYIKHVQILRFHSRVPIVD 188 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVil----------------SGGDPl~l----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~ 188 (352) +.-.+..+|+++||.|..|.- +||-+++. +.+....+++.|+-+.+--.+ =++++.+.. T Consensus 11 ~nA~~la~~L~~~p~V~~V~yPgl~~~~~~~~~~~~~~~~G~~~sf~l~~~~~a~~f~~~l~l~~~~~sl-G~~~TL~~~ 89 (137) T 1pff_A 11 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSL-GGPESLIQH 89 (137) T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSC-CSSSCEEEC T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEECCC-CCCCCEEEC T ss_conf 9999999978758984341168877850789987413687604789848899999999837822451367-877514657 Q ss_pred HHHCC-----HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH Q ss_conf 34339-----9999998625993899933699588699999999999 Q gi|254781065|r 189 PQRIN-----PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL 230 (352) Q Consensus 189 P~Rit-----~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L 230 (352) |..-+ ++-.....-...-+-+.+-+.++.+|-....+|++++ T Consensus 90 ~~~~~h~~~~~~~~~~~Gi~~~liRlSvGlEd~edLi~dl~~AL~~~ 136 (137) T 1pff_A 90 PASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 136 (137) T ss_dssp HHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC T ss_pred CCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH T ss_conf 63015322999999966989296999970189999999999999975 No 62 >>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:127-287) Probab=48.10 E-value=16 Score=17.30 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=23.6 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 999999729974799972698132498999999999861 Q gi|254781065|r 133 AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 133 ~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) ..+.++.+...++.|++||| +..|..|..-|.+... T Consensus 113 ~~~~~~~~~~~~~~l~l~GG---Va~N~~l~~~l~~~l~ 148 (161) T 3eno_A 113 EVLERALYVSGKDEILMAGG---VALNRRLRDMVTNMAR 148 (161) T ss_dssp HHHHHHHHHHTCSEEEEESS---GGGCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEECCC---HHHHHHHHHHHHHHHH T ss_conf 99999998707762121362---7778999999999999 No 63 >>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, cytoplasm, hydrolase, protease, thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} (A:) Probab=47.24 E-value=20 Score=16.61 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=86.0 Q ss_pred EEEEEECCCCCCCCHHH-HHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEEC----------- Q ss_conf 79997269813249899-999999986199812898743435634343399999998625993899933----------- Q gi|254781065|r 145 WEVIFTGGDPLILSHKR-LQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIH----------- 212 (352) Q Consensus 145 ~eVilSGGDPl~l~~~~-L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H----------- 212 (352) ..|++||=+|+-.-... =..+.+.|.. ++..++++++..=+.=..+.+.+.+.+.++...+++++- T Consensus 4 ~~vLiTGF~PF~~~~~NpS~~i~~~L~~--~~~~~~i~~~~lpV~y~~~~~~~~~~~~~~~p~~vih~Gv~~~~~~i~lE 81 (215) T 3giu_A 4 XHILVTGFAPFDNQNINPSWEAVTQLED--IIGTHTIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPE 81 (215) T ss_dssp CEEEEEEECCCTTCSCCHHHHHHHHSCS--EETTEEEEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECTTCCSBEEB T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEEECCEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEE T ss_conf 8999961178898998818999998763--53686599996425589999999999985788469999841885436777 Q ss_pred --------CCCHHHC-------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCH------HHHHHHHH Q ss_conf --------6995886-------------------99999999999987989823279862345788------99999999 Q gi|254781065|r 213 --------ANHPYEF-------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDP------EILANLMR 259 (352) Q Consensus 213 --------~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~------~~l~~L~~ 259 (352) ++-|+.- +-...+.+++|+++|+++. +.+|+ .++-...+ T Consensus 82 ~~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~~~~~l~~~g~~~~--------~S~daG~YlCN~i~Y~sL~ 153 (215) T 3giu_A 82 RVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLPVKAXTQSIINQGLPGA--------LSNSAGTFVCNHTLYHLGY 153 (215) T ss_dssp CEEESCEECSSCCTTSCCCEEECSCTTSCSEEECCSCHHHHHHHHHHTTCCBC--------CBSCCCSSHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE--------ECCCCCCHHHHHHHHHHHH T ss_conf 88874465667886798568887468993330558889999999986699807--------7569862062689999999 Q ss_pred HHHHCC--CEEEEEECCCCCCCC----CCCCCCHHHHHHHHHHHHHHCC Q ss_conf 999869--824230113457652----1011869999999999998288 Q gi|254781065|r 260 TFVELR--IKPYYLHHPDLAAGT----SHFRLTIEEGQKIVASLKEKIS 302 (352) Q Consensus 260 ~L~~~g--V~PYYl~~~d~v~G~----~hf~v~~~~~~~i~~~l~~~ls 302 (352) .+...+ +.--.+|.+-.-.++ ..+..+++...+.++.+-+.+. T Consensus 154 ~~~~~~~~~~~~FiHVP~~~~~~~~~~~~~~~~l~~~~~~i~~~i~~~~ 202 (215) T 3giu_A 154 LQDKHYPHLRFGFIHVPYIPEQVIGKPDTPSXPLEKIVAGLTAAIEAIS 202 (215) T ss_dssp HHHHTCTTCEEEEEEECCCGGGGTTCTTCCCCCHHHHHHHHHHHHHTCC T ss_pred HHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 9985389971699976897154215899998899999999999999964 No 64 >>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolase, structural genomics; HET: MSE; 2.10A {Clostridium difficile 630} (A:1-84,A:199-274) Probab=46.74 E-value=16 Score=17.26 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=14.2 Q ss_pred CCHHHCCHHHHHHHHHHHHCCCEE Q ss_conf 995886999999999999879898 Q gi|254781065|r 214 NHPYEFSEEAIAAISRLANAGIIL 237 (352) Q Consensus 214 NHp~Elt~~~~~A~~~L~~~Gv~v 237 (352) ++-.++.|++.+++++|++.|+.+ T Consensus 18 ~~~~~i~~~~~~~L~~L~~~Gi~i 41 (160) T 3fzq_A 18 DEVYGIPESAKHAIRLCQKNHCSV 41 (160) T ss_dssp BTTTBCCHHHHHHHHHHHHTTCEE T ss_pred CCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 898945999999999998689989 No 65 >>1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} (A:) Probab=46.50 E-value=20 Score=16.62 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=71.9 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEE------------- Q ss_conf 7999726981324989999999998619981289874343563434339999999862599389993------------- Q gi|254781065|r 145 WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAI------------- 211 (352) Q Consensus 145 ~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~------------- 211 (352) ..|++||=+|+-.-...=.+.+-....=..+.-++|.++..=+.-..+.+.+.+.+++..-.+++.+ T Consensus 3 ~~IliTGF~pF~~~~~NPS~~i~~~L~~~~~~~~~i~~~~lpV~~~~~~~~l~~~l~~~~pd~vlh~Gv~~~~~~i~lE~ 82 (215) T 1aug_A 3 KKVLLTGFDPFGGETVNPSWEAVKRLNGAAEGPASIVSEQVPTVFYKSLAVLREAIKKHQPDIIICVGQAGGRMQITPER 82 (215) T ss_dssp EEEEEEEECCCSSCSCCHHHHHHHTTTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSBEEBS T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE T ss_conf 67999804898969868399999984442589846999976620888999999999857871899997038853698400 Q ss_pred ------CCCCHHHC-------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCH------HHHHHHHHH Q ss_conf ------36995886-------------------99999999999987989823279862345788------999999999 Q gi|254781065|r 212 ------HANHPYEF-------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDP------EILANLMRT 260 (352) Q Consensus 212 ------H~NHp~El-------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~------~~l~~L~~~ 260 (352) .+.-|++. +-...+.+++|+++|+++. +-+|+ .++-...+. T Consensus 83 ~A~N~~~~~~pD~~g~~p~~~~i~~~gp~~~~t~lp~~~i~~~l~~~g~~~~--------~S~daG~YlCN~~~Y~sl~~ 154 (215) T 1aug_A 83 VAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAA--------VSYTAGTFVCNHLFYGLMDE 154 (215) T ss_dssp EEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHTTCCBC--------CBSCCCSSHHHHHHHHHHHH T ss_pred EECCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEE--------ECCCCCCCHHHHHHHHHHHH T ss_conf 3034676642113689888987568997536738999999998875599848--------81798741225799999999 Q ss_pred HH--HCCCEEEEEECCCCC---CCCCCCCCCHHHHHHHHHHHH Q ss_conf 99--869824230113457---652101186999999999999 Q gi|254781065|r 261 FV--ELRIKPYYLHHPDLA---AGTSHFRLTIEEGQKIVASLK 298 (352) Q Consensus 261 L~--~~gV~PYYl~~~d~v---~G~~hf~v~~~~~~~i~~~l~ 298 (352) .. ...+.--.+|.+--- .....-..+++...+.++.+- T Consensus 155 ~~~~~~~~~~~FVHVP~~~~~~~~~~~~~~~le~~~~~i~~~i 197 (215) T 1aug_A 155 ISRHHPHIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIAA 197 (215) T ss_dssp HHHHCTTCEEEEEEECCCGGGSSSSCCCCCCHHHHHHHHHHHH T ss_pred HHHHCCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9962899826999878961202557999877999999999999 No 66 >>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} (A:317-705) Probab=45.71 E-value=21 Score=16.48 Aligned_cols=14 Identities=0% Similarity=0.078 Sum_probs=6.0 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999999869 Q gi|254781065|r 252 EILANLMRTFVELR 265 (352) Q Consensus 252 ~~l~~L~~~L~~~g 265 (352) ..+.+.+++..... T Consensus 324 ~~l~~~~~~~~~~s 337 (389) T 2o8r_A 324 REIIDILEIQLRDN 337 (389) T ss_dssp HHHHHHHHHHHHCC T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999973326 No 67 >>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} (A:1-213) Probab=45.13 E-value=22 Score=16.33 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCC------------CH-------HHHHHHHHHHHCCC Q ss_conf 899999999997299747999726981324------------98-------99999999986199 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLIL------------SH-------KRLQKVLKTLRYIK 173 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------------~~-------~~L~~ll~~L~~i~ 173 (352) -.++.++++.++++++|+-||++|+++-.. +. ..+..++..+...+ T Consensus 41 ~~~l~~~~~~~~~~~~v~~ivl~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (213) T 1hzd_A 41 IKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLP 105 (213) T ss_dssp HHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999858993599997699881589987455540452025677899999999975699 No 68 >>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:119-282) Probab=44.79 E-value=17 Score=17.09 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=25.2 Q ss_pred HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 99997299747999726981324989999999998619981 Q gi|254781065|r 135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHV 175 (352) Q Consensus 135 ~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv 175 (352) +.+..+...++.|++||| +..|..|.+-+.+...-.++ T Consensus 118 ~~~~~~~~~~~~l~lsGG---Va~N~~l~~~l~~~l~~~~~ 155 (164) T 2ivn_A 118 TERAVAHTEKDEVVLVGG---VAANNRLREMLRIMTEDRGI 155 (164) T ss_dssp HHHHHHHHCCSEEEEESG---GGGCHHHHHHHHHHHHHHTC T ss_pred HHHHHHCCCCCCEEEECH---HHHHHHHHHHHHHHHHHCCC T ss_conf 998654035553254155---78999999999999997699 No 69 >>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CBIE); beta, alpha-beta-alpha sandwich, structural genomics, PSI; HET: SAH; 2.27A {Archaeoglobus fulgidus dsm 4304} (A:1-123) Probab=44.59 E-value=16 Score=17.17 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 8999999999972997479997269813249899999999986199 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK 173 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~ 173 (352) ....+......++...| ++++-|||+..+. ..++++++..++ T Consensus 75 ~~~~~~~~~~~~~g~~V--~~l~~GDp~~y~~--~~~l~~~~~~~~ 116 (123) T 2bb3_A 75 KGDEIRRIXEEGREREV--AVISTGDPXVAGL--GRVLREIAEDVE 116 (123) T ss_dssp SHHHHHHHHHHHHHSCE--EEEESBCTTTTTS--HHHHHTSCCSSE T ss_pred CHHHHHHHHHHHCCCCE--EEEECCCCCCCCH--HHHHHHHHCCCC T ss_conf 69999999999769974--9997698662546--899999842688 No 70 >>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} (A:1-244) Probab=43.88 E-value=18 Score=16.87 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -.++.++++.++++++++=|||||.++ T Consensus 39 ~~~l~~al~~~~~d~~~~~vVl~g~g~ 65 (244) T 1wz8_A 39 HRGLARVWRDLEAVEGVRAVLLRGEGG 65 (244) T ss_dssp HHHHHHHHHHHTTCTTCSEEEEEEGGG T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999996299974999964554 No 71 >>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263) Probab=43.64 E-value=5.9 Score=20.33 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=31.5 Q ss_pred CHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 95886999999999999879898232798623457889999999999986982423 Q gi|254781065|r 215 HPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY 270 (352) Q Consensus 215 Hp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY 270 (352) +-.+..|.+.+++++|+++|+++.-=| |.+..+.....++|..+|+..|. T Consensus 14 ~~~~~~~~a~e~l~~L~~~G~~~~ivT------N~~~~~~~~~~~~L~~lg~~~~~ 63 (131) T 1zjj_A 14 RGNRAIPGVRELIEFLKERGIPFAFLT------NNSTKTPEMYREKLLKMGIDVSS 63 (131) T ss_dssp ETTEECTTHHHHHHHHHHHTCCEEEEE------SCCSSCHHHHHHHHHTTTCCCCG T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHHCCCCCCC T ss_conf 899958449999999997799689994------89999999999999976998881 No 72 >>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} (A:1-207) Probab=43.37 E-value=23 Score=16.15 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -+++.++++.+.++++++=|||+||.+ T Consensus 37 ~~~l~~~~~~~~~d~~v~~vvi~~~g~ 63 (207) T 2ppy_A 37 YKEFNAAIDDIRFDPDIKVVIVXSDVP 63 (207) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEECST T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 999999999997597863233213443 No 73 >>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:108-274) Probab=43.27 E-value=23 Score=16.14 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=27.3 Q ss_pred HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE Q ss_conf 72997479997269813249899999999986199812 Q gi|254781065|r 139 QEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQ 176 (352) Q Consensus 139 ~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~ 176 (352) .+...|+.|+++|| .+-++..|.+.|+.+.+...++ T Consensus 125 ~~~~~i~~iv~~GG--~va~N~~lr~~l~~~~~~~~~~ 160 (167) T 2ews_A 125 AREFKTENIVYIGS--SFHNNALLRKVVEDYTVLRGCK 160 (167) T ss_dssp HHHTTCCEEEEESG--GGTTCHHHHHHHHHHHHHTTCE T ss_pred HHCCCCCCEEEECC--HHHCCHHHHHHHHHHHHHCCCE T ss_conf 54239893999896--2650499999999999768998 No 74 >>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A (A:1-82,A:183-258) Probab=42.63 E-value=20 Score=16.59 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 999999999972997479997269813249899999999986 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLR 170 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~ 170 (352) +...++++.+++. .+.=++.||.. ......+++.+. T Consensus 23 ~~~~e~L~~l~~~-G~~i~i~Tgr~-----~~~~~~~l~~l~ 58 (158) T 2pq0_A 23 LSTIEAVRRLKQS-GVYVAIATGRA-----PFXFEHVRKQLG 58 (158) T ss_dssp HHHHHHHHHHHHT-TCEEEEECSSC-----GGGSHHHHHHHT T ss_pred HHHHHHHHHHHHC-CCEEEEECCCC-----HHHHHHHHHHHC T ss_conf 9999999999978-99999989998-----799899999744 No 75 >>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to P3F inhibitor; HET: P3F; 1.78A {Escherichia coli} (A:278-415) Probab=42.51 E-value=7.4 Score=19.60 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=57.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC-----------------CCCCCCC------HHHHHHHHHHHHCCCCCEEEEEE---- Q ss_conf 99999999997299747999726-----------------9813249------89999999998619981289874---- Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTG-----------------GDPLILS------HKRLQKVLKTLRYIKHVQILRFH---- 181 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSG-----------------GDPl~l~------~~~L~~ll~~L~~i~hv~~IRi~---- 181 (352) +.-.+..+|+++||.|..|.--| |-++++. .+....++++ .+.+.++ T Consensus 11 ~na~~la~~L~~~p~V~~V~yP~l~s~~~~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~f~~~------l~lf~~~~SlG 84 (138) T 2fq6_A 11 ESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDN------FSLFSMAYSWG 84 (138) T ss_dssp HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTT------CSSCEECSCCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHC------CCCCEEEECCC T ss_conf 999999988875455432232222204579988631589866347899436899999999972------99065956778 Q ss_pred -CCEEEEEHHHCCHHHHHHHHHCCC---CEEEEECCCCHHHCCHHHHHHHHHH Q ss_conf -343563434339999999862599---3899933699588699999999999 Q gi|254781065|r 182 -SRVPIVDPQRINPELIQCLKEAGK---PVYIAIHANHPYEFSEEAIAAISRL 230 (352) Q Consensus 182 -TR~pv~~P~Rit~~L~~~l~~~~~---~~~iv~H~NHp~Elt~~~~~A~~~L 230 (352) ++..+..|...+..=..--.+.+. -+-+.+-...|.+|-....+|++++ T Consensus 85 ~~~sL~~~~~~~~~~~~~~~~~~gi~~~liRisvGLEd~~dLiadl~~Al~~~ 137 (138) T 2fq6_A 85 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 137 (138) T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT T ss_pred CCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 88665437834344457913765999697999855289999999999999966 No 76 >>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} (A:1-198) Probab=42.23 E-value=24 Score=16.03 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 89999999999729974799972698132 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI 156 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~ 156 (352) -+++.++++.++++++++=||+||+++.- T Consensus 28 ~~~l~~~l~~~~~d~~~~vvil~g~~~~F 56 (198) T 1uiy_A 28 ALSLLQALDDLEADPGVRAVVLTGRGKAF 56 (198) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 99999999999739996499996654332 No 77 >>1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} (A:) Probab=41.51 E-value=24 Score=15.95 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=34.8 Q ss_pred HHHCCCCEEEEECCC---CH--HHCCHHHHHHHHHHHHCCCEEEECHHHHHCCC Q ss_conf 862599389993369---95--88699999999999987989823279862345 Q gi|254781065|r 200 LKEAGKPVYIAIHAN---HP--YEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248 (352) Q Consensus 200 l~~~~~~~~iv~H~N---Hp--~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVN 248 (352) +......+++|||-+ -| +|+++|. .+.|.+.|+.|+.+|=+|.|+- T Consensus 69 ~e~~~~~iVvVTh~~GF~~pg~~e~~~e~---~~~L~~~Gv~V~t~TH~lSg~e 119 (206) T 1t57_A 69 SEXVEGNIVSVTHHAGFREKGQLELEDEA---RDALLERGVNVYAGSHALSGVG 119 (206) T ss_dssp HTTCCSEEEEECCCTTSSSTTCCSSCHHH---HHHHHHHTCEEECCSCTTTTHH T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCEEEEECCCCCCCH T ss_conf 98638979999465787899966469999---9999976988999513034415 No 78 >>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} (A:1-236) Probab=41.49 E-value=7.7 Score=19.49 Aligned_cols=27 Identities=15% Similarity=0.291 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -.++.++++.++++++++-||++||.+ T Consensus 46 ~~~l~~~l~~~~~d~~~~~vi~~~~~~ 72 (236) T 3g64_A 46 YADLRDLLAELSRRRAVRALVLAGEGR 72 (236) T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEECSS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999997399943999852554 No 79 >>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} (A:) Probab=41.12 E-value=25 Score=15.91 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999999729974799972698 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) -.++.++++-++++++++=||++|++ T Consensus 33 ~~~l~~al~~~~~d~~v~~vi~~~~g 58 (263) T 3lke_A 33 GTSLLEAIRAGNNETSIHSIILQSKH 58 (263) T ss_dssp HHHHHHHHHHHHHCSSCCEEEEEESC T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 99999999998509995799996189 No 80 >>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:1-122) Probab=41.01 E-value=25 Score=15.90 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=24.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 99999999729974799972698132498999999999861 Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) .+++.+.+++...| ++++.|||+..+. -.+++..+.+ T Consensus 67 ~~~i~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~ 103 (122) T 2z6r_A 67 FENIVLPLAKENDV--AFLTPGDPLVATT--HAELRIRAKR 103 (122) T ss_dssp HHHHTHHHHTTSCE--EEEESBCTTSSSS--THHHHHHHHH T ss_pred HHHHHHHHHCCCCE--EEEECCCCCCCCC--HHHHHHHHHH T ss_conf 99999999769988--9996786554446--9999999986 No 81 >>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271) Probab=40.52 E-value=21 Score=16.45 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=35.0 Q ss_pred CCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 995886999999999999879898232798623457889999999999986982423 Q gi|254781065|r 214 NHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY 270 (352) Q Consensus 214 NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY 270 (352) .+-.+.-|.+.+++++|+++|+++.--| |-...+...+.++|-..|+..|. T Consensus 29 ~~~~~~~pga~e~l~~L~~~G~~~~~vT------N~~~~~~~~~~~~l~~~gi~~~~ 79 (145) T 1vjr_A 29 YLDDSLLPGSLEFLETLKEKNKRFVFFT------NNSSLGAQDYVRKLRNXGVDVPD 79 (145) T ss_dssp EETTEECTTHHHHHHHHHHTTCEEEEEE------SCTTSCHHHHHHHHHHTTCCCCG T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEC------CCCCCCHHHHHHHHHHCCCCCCC T ss_conf 8799358209999999997699789945------89989999999999851556652 No 82 >>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284) Probab=39.90 E-value=17 Score=17.10 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=32.7 Q ss_pred HHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 5886999999999999879898232798623457889999999999986982423011 Q gi|254781065|r 216 PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH 273 (352) Q Consensus 216 p~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~ 273 (352) -.++-|.+.+++++|+++|+++.-=| |.+..+...+.++|-..|+.+|+-.+ T Consensus 28 ~~~~~pg~~~~L~~L~~~g~~~~i~T------n~~~~~~~~~~~~l~~~g~~~~f~~~ 79 (162) T 2hx1_A 28 YNGLLPGIENTFDYLKAQGQDYYIVT------NDASRSPEQLADSYHKLGLFSITADK 79 (162) T ss_dssp TTEECTTHHHHHHHHHHTTCEEEEEE------CCCSSCHHHHHHHHHHTTCTTCCGGG T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHCCCCCCCCHHE T ss_conf 99848319999999998699589996------89998769999885402444533103 No 83 >>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:55-141) Probab=39.19 E-value=26 Score=15.71 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=41.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHHH-HHHCCCCCEEEE Q ss_conf 989999999999729974799972698132------49899999999-986199812898 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVLK-TLRYIKHVQILR 179 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll~-~L~~i~hv~~IR 179 (352) ....+++..+.|+++|+|.++-..-|+.=. -+.+.|.+++. .|..++.|..++ T Consensus 19 ~~~~~~~~~~~l~~~p~V~~~~~vtG~~d~i~~v~~~~~~~l~~~i~~~l~~~~gv~~~~ 78 (87) T 1i1g_A 19 KPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVC 78 (87) T ss_dssp CGGGHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEE T ss_pred CCCHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 530267777762279718998886379989999998999999999999863599973899 No 84 >>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, X-RAY, zinc, alternative splicing; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* (A:) Probab=38.97 E-value=24 Score=15.95 Aligned_cols=75 Identities=24% Similarity=0.169 Sum_probs=34.4 Q ss_pred HHHHHHHHH---CC-CEEEEEE-ECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC Q ss_conf 999999972---99-7479997-269813249899999999986199812898743435634343399999998625993 Q gi|254781065|r 132 EAALAYIQE---KS-QIWEVIF-TGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP 206 (352) Q Consensus 132 ~~~~~Yi~~---~~-eI~eVil-SGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~ 206 (352) ..-++||.+ +| ..-.|.- +-=-| -.+=-.++.+-|.+-+||..-=+.+|+--.+|+- .+=+..|.+.|.+ T Consensus 83 ~~Fl~~~~~~~l~~~~~y~ITwy~SWSP---C~~CA~kia~FL~~~~~v~L~If~sRLY~~~~~~--q~gLr~L~~aG~~ 157 (207) T 3ir2_A 83 LCFLDVIPFWKLDLDQDYRVTCFTSWSP---CFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRA--QEGLRTLAEAGAK 157 (207) T ss_dssp HHHHHHGGGGCCCTTSCEEEEEEEEECC---CHHHHHHHHHHHHHCTTEEEEEEEEECCCCSSSH--HHHHHHHHHTTCE T ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCC---HHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCHHH--HHHHHHHHHCCCC T ss_conf 9999875141579675378987772688---4999999999997699907997763413556077--8999999986996 Q ss_pred EEEEE Q ss_conf 89993 Q gi|254781065|r 207 VYIAI 211 (352) Q Consensus 207 ~~iv~ 211 (352) |.||. T Consensus 158 v~iM~ 162 (207) T 3ir2_A 158 ISIMT 162 (207) T ss_dssp EEECC T ss_pred EEEEC T ss_conf 89727 No 85 >>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} (A:1-90,A:197-282) Probab=38.77 E-value=27 Score=15.67 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 999999999972997479997269813249899999999986 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLR 170 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~ 170 (352) +...+++..+++. .+.=++.||-.... +..++..+. T Consensus 25 ~~~~~al~~L~~~-Gi~lvi~Tgr~~~~-----~~~~~~~l~ 60 (176) T 1rkq_A 25 PAVKNAIAAARAR-GVNVVLTTGRPYAG-----VHNYLKELH 60 (176) T ss_dssp HHHHHHHHHHHHT-TCEEEEECSSCGGG-----THHHHHHTT T ss_pred HHHHHHHHHHHHC-CCEEEEECCCCHHH-----HHHHHHHHC T ss_conf 9999999999988-99999998998899-----999999847 No 86 >>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A (A:295-407,A:484-593) Probab=38.73 E-value=27 Score=15.66 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=39.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE----ECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 98999999999972997479997----269813249899999999986199812898743 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIF----TGGDPLILSHKRLQKVLKTLRYIKHVQILRFHS 182 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVil----SGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~T 182 (352) ..+++.++++.++++++++-|+| .|||... ...+...+.++...+..-+.-++. T Consensus 29 ~~~~l~~~l~~~~~d~~vk~vvl~~~s~Ggdv~~--~~~i~~~~~~~~~~~kpvva~~~g 86 (223) T 3bf0_A 29 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA--SEVIRAELAAARAAGKPVVVSMGG 86 (223) T ss_dssp EHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHH--HHHHHHHHHHHHHTTCCEEEEEEE T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHH--HHHHHHHHHHHHHCCCCEEEEECC T ss_conf 6277899998775066644999996399866679--999999999998659977999678 No 87 >>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} (A:121-240) Probab=38.56 E-value=27 Score=15.65 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=39.2 Q ss_pred HHHHHHHHHCCCCEEEEECCCCH--HHCCHHHHHHHHHHHHCCCEEEECHHH Q ss_conf 99999986259938999336995--886999999999999879898232798 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHP--YEFSEEAIAAISRLANAGIILLSQSVL 243 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp--~Elt~~~~~A~~~L~~~Gv~v~nQsVL 243 (352) -|+...|++.+..+.++-.-+.+ ....+.+....+.+.+.||.+..++-. T Consensus 41 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 92 (120) T 3kd9_A 41 IEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEIT 92 (120) T ss_dssp HHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCE T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCEEEEEEECCEE T ss_conf 7788998752874316863233455533221022222102202456522137 No 88 >>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} (A:) Probab=37.27 E-value=25 Score=15.87 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC---------CCCCCCH-------------HHHHHHHHHHHCCCC Q ss_conf 8999999999972997479997269---------8132498-------------999999999861998 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG---------DPLILSH-------------KRLQKVLKTLRYIKH 174 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG---------DPl~l~~-------------~~L~~ll~~L~~i~h 174 (352) -+++.++++.+..+++++-|||+|| |.-.+.+ ..+..++..+..++- T Consensus 36 ~~~l~~al~~~~~d~~v~~vil~~~~~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k 104 (289) T 3h0u_A 36 VRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPA 104 (289) T ss_dssp HHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSS T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999986599956999953554320124678888763012201123566788999999999876 No 89 >>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii} (A:1-104) Probab=37.18 E-value=28 Score=15.50 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=61.6 Q ss_pred CCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 27430000011223301255556789899999999997299747999726981324989999999998619981289874 Q gi|254781065|r 102 LHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFH 181 (352) Q Consensus 102 t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~ 181 (352) +..+.+|||.=.... ..--..+.++.-+|..++.-..+++-.+|--....-..+..++..+..-. +.. T Consensus 2 ~~~~~~Y~RvSt~~Q-------~~sl~~Q~~~~~~~a~~~~~~~~~~~d~~~g~~~~R~~~~~ll~~~~~~~-~~~---- 69 (104) T 3lhk_A 2 NAKIIGYARVSFNAQ-------KDDLERQIQLIKSYAEENGWDIQILKDIGSGLNEKRKNYKKLLKXVXNRK-VEK---- 69 (104) T ss_dssp CCEEEEEEEESSGGG-------HHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTCTTCHHHHHHHHHHHTTC-EEE---- T ss_pred CCEEEEEEEECCCHH-------HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CCE---- T ss_conf 965999999883103-------34299999999999997698238998477655665656999999987798-666---- Q ss_pred CCEEEEEHHHC---C-HHHHHHHHHCCCCEEEE Q ss_conf 34356343433---9-99999986259938999 Q gi|254781065|r 182 SRVPIVDPQRI---N-PELIQCLKEAGKPVYIA 210 (352) Q Consensus 182 TR~pv~~P~Ri---t-~~L~~~l~~~~~~~~iv 210 (352) +.+....|+ + +-+.++|.+.+..++.+ T Consensus 70 --iiv~~~dRl~R~~~~~l~~~l~~~gv~v~~~ 100 (104) T 3lhk_A 70 --VIIAYPDRLTRFGFETLKEFFKSYGTEIVII 100 (104) T ss_dssp --EEESSHHHHCSSCHHHHHHHHHHTTCEEEES T ss_pred --EEEECCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf --9986687334229999999999879889996 No 90 >>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A (A:) Probab=36.64 E-value=29 Score=15.44 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH Q ss_conf 8999999999972997479997269813249899999999 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLK 167 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~ 167 (352) ..++.++++.++++++++=||++|+.+.--+-..+.+.-. T Consensus 32 ~~~l~~~l~~~~~d~~~~~vil~g~~~~F~aG~d~~~~~~ 71 (243) T 2q35_A 32 VEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIR 71 (243) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHC T ss_conf 9999999999975999359998176322122366777640 No 91 >>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:) Probab=36.62 E-value=29 Score=15.44 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=51.6 Q ss_pred CCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC Q ss_conf 10000076887145207537999727430000011223301255556789899999999997299747999726981324 Q gi|254781065|r 78 IGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLIL 157 (352) Q Consensus 78 l~E~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l 157 (352) .+.+-+.|...+.++-.++..-. ...+++=.|.|=+-.. ++.....+ ...-|++-+.|..++-+||-|.-+ T Consensus 33 ~~~e~~~P~~~~~~~~~~g~~~~--~~~~lfPGYvFv~~d~---~~~~~~~~----~~~~ir~~~gV~~~v~~~~~p~~i 103 (119) T 1nz8_A 33 KIFQVLIPTEEVVELREGGKKEV--VRKKLFPGYLFIQMDL---GDEEEPNE----AWEVVRGTPGITGFVGAGMRPVPL 103 (119) T ss_dssp TCCEEECSEEEEEEECSSSCEEE--EEEESSTTEEEEEECC---CSSSSCCH----HHHHHHHSTTCCCCCCSSSSSCBC T ss_pred CCCEEEECCEEEEEEECCCEEEE--EEEECCCEEEEEEEEE---CCCCCCHH----HHHHHHCCCCCEEECCCCCEECCC T ss_conf 45367736888899982871688--7664478089999982---67555402----557766599934986899976518 Q ss_pred CHHHHHHHHHHHHCC Q ss_conf 989999999998619 Q gi|254781065|r 158 SHKRLQKVLKTLRYI 172 (352) Q Consensus 158 ~~~~L~~ll~~L~~i 172 (352) +++..++++..+.++ T Consensus 104 ~~~ei~~i~~~~~e~ 118 (119) T 1nz8_A 104 SPDEVRHILEVSGLL 118 (119) T ss_dssp CHHHHHHHHHHHTSC T ss_pred CHHHHHHHHHHHCCC T ss_conf 999999999973879 No 92 >>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus HB8} (A:1-120) Probab=36.35 E-value=29 Score=15.41 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=28.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 899999999997299747999726981324989999999998619 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) .+.++++++..++...| ++++.|||+..+. -.++++.+.+. T Consensus 62 ~~~~~~~~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~~ 102 (120) T 1va0_A 62 EEIHRLLLRHARAHPFV--VRLKGGDPMVFGR--GGEEVLFLLRH 102 (120) T ss_dssp HHHHHHHHHHHHTSSEE--EEEESBCTTSSSS--HHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCEE--EEECCCCCCEECH--HHHHHHHHHHC T ss_conf 99999999985204302--3302675411027--88999987512 No 93 >>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8} (A:) Probab=36.20 E-value=28 Score=15.52 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=40.0 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHHH-HHHCCCCCEEEEEEC Q ss_conf 989999999999729974799972698-1324-----9899999999-986199812898743 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVLK-TLRYIKHVQILRFHS 182 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll~-~L~~i~hv~~IRi~T 182 (352) ....+++..+.+++.|+|.++-...|+ =+++ +.+.|..++. .|.+++.|..++-+. T Consensus 11 ~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~T~i 73 (92) T 2djw_A 11 RGNRVQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQGILSLEGVERTETLL 73 (92) T ss_dssp CGGGHHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEEEEE T ss_pred CCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 879899999999769898789898588989999998999999999999863599981799999 No 94 >>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} (A:64-163) Probab=36.17 E-value=29 Score=15.39 Aligned_cols=53 Identities=25% Similarity=0.220 Sum_probs=39.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHH-HHHCCCCCEEEE Q ss_conf 9899999999997299747999726981-324-----9899999999-986199812898 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLK-TLRYIKHVQILR 179 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~-~L~~i~hv~~IR 179 (352) +.+.+++..+.|++.|+|.++-..-||. +++ +.+.+..++. .|.++++|..+. T Consensus 22 ~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~~~v~~~d~~~l~~~i~~~l~~~~gv~~~~ 81 (100) T 2gqq_A 22 APDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTR 81 (100) T ss_dssp STTHHHHHHHHHSSCTTEEEEEEESSSSSEEEEEECSSHHHHHHHTTTSSTTSSSCSEEE T ss_pred CCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 511233334530588747899996068858999998987999999999985489983999 No 95 >>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395) Probab=35.56 E-value=30 Score=15.33 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=18.9 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 989999999999729974799972698132498999999999861 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +.+.+.++++-+.++|++.-|++.+.=+..........++..+.+ T Consensus 58 ~~~~~~~~l~~l~~d~~vd~iiv~~~~~~~~~~~~~~~~i~~~~~ 102 (152) T 2fp4_B 58 KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRE 102 (152) T ss_dssp CHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 678899999999719998789999808741369999999999995 No 96 >>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* (A:1-131) Probab=35.55 E-value=30 Score=15.33 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 89999999999729974799972698132498999999999861 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) .+.++.+++..++...| ++++.|||+..+. ..++++.+.+ T Consensus 61 ~~~~~~~~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~ 100 (131) T 2zvb_A 61 LDRAEEALERALSGQRV--ALVSGGDPGIYGM--AAPVLELMEE 100 (131) T ss_dssp HHHHHHHHHHHHTTCEE--EEEESBCTTSSSS--HHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCEE--EEEECCCCCCCCC--HHHHHHHHHH T ss_conf 99999999999719918--9983576654440--5899999998 No 97 >>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250) Probab=35.26 E-value=13 Score=17.88 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=28.8 Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE-EEC Q ss_conf 9999986259938999336995886999999999999879898232798623457889999999999986982423-011 Q gi|254781065|r 195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY-LHH 273 (352) Q Consensus 195 ~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY-l~~ 273 (352) +.++.+++.+.++.++| |-+.. ......++|.+.|+.+..+.+ +..+++.+..+.+ .+|+.|-- ++. T Consensus 26 e~i~~l~~~G~~~~i~T--n~s~~---~~~~~~~~l~~~gi~~~~~~~----~~~~p~~~~~~~~---~~~v~~~~~~~V 93 (144) T 2c4n_A 26 EFLHGIMDKGLPLVLLT--NYPSQ---TGQDLANRFATAGVDVPDSVF----YTSSPWIIRAALN---KMQAHSEETVIV 93 (144) T ss_dssp HHHHHHHHTTCCEEEEE--SCCSC---CHHHHHHHHHHTTCCCCGGGE----EEHSTHHHHHHHH---HHTCCGGGEEEE T ss_pred HHHHHHHHCCCCEEEEE--CCCCC---CHHHHHHHHHHCCCCCCCCEE----CCHHHHHHHHHHH---HHHCCCCCCCCC T ss_conf 99999997799589992--89989---989997554312467752102----2152577776666---640475335122 Q ss_pred CCC Q ss_conf 345 Q gi|254781065|r 274 PDL 276 (352) Q Consensus 274 ~d~ 276 (352) .|. T Consensus 94 gDd 96 (144) T 2c4n_A 94 GDN 96 (144) T ss_dssp ESC T ss_pred CCC T ss_conf 787 No 98 >>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} (A:1-238) Probab=35.13 E-value=30 Score=15.28 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=23.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 8999999999972997479997269813 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPL 155 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl 155 (352) -.++.++++.++++++++=|++||+++- T Consensus 36 ~~~L~~~l~~~~~d~~~~vvvl~~~~~~ 63 (238) T 1mj3_A 36 IEELNQALETFEEDPAVGAIVLTGGEKA 63 (238) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCSSE T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999999976899249999879996 No 99 >>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} (A:278-412) Probab=35.09 E-value=30 Score=15.28 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=57.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC----------------CCCCCC----CHHHHHHHHHHHHCCCCCEEEEEECCEEEEE Q ss_conf 99999999997299747999726----------------981324----9899999999986199812898743435634 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTG----------------GDPLIL----SHKRLQKVLKTLRYIKHVQILRFHSRVPIVD 188 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSG----------------GDPl~l----~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~ 188 (352) +.-.+..+|+++||.|..|.-.| |-+++. +.+....+++.|.-..+... -+....+.. T Consensus 11 ~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~~~~~s~--gg~~tl~~~ 88 (135) T 2cb1_A 11 ETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLKAANL--GDARTLLVH 88 (135) T ss_dssp HHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEECSCC--SCSSCEEEC T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEEE--CCCCCEEEC T ss_conf 446667764246985654212333332232212333356673468996899999999963718887667--576623557 Q ss_pred HHH-----CCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHH Q ss_conf 343-----399999998625993899933699588699999999999 Q gi|254781065|r 189 PQR-----INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRL 230 (352) Q Consensus 189 P~R-----it~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L 230 (352) |.- .+.+-.....-...-+-+.+-+..|.+|-....+|+.+| T Consensus 89 ~~~~~~~~~~~~~~~~~gi~~~liRlsvGlEd~edLi~Dl~~Al~~l 135 (135) T 2cb1_A 89 PWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEAV 135 (135) T ss_dssp TTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC- T ss_pred CCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC T ss_conf 73103312899999866979596999972099999999999998319 No 100 >>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (N:) Probab=34.57 E-value=8 Score=19.37 Aligned_cols=20 Identities=40% Similarity=0.909 Sum_probs=14.9 Q ss_pred CCCCEEECCCEEEEEECCCCCCHHHCCCCCC Q ss_conf 8871452075379997274300000112233 Q gi|254781065|r 86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRRE 116 (352) Q Consensus 86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~ 116 (352) -.||++||- -.-||-|||.. T Consensus 23 ~~glIrKYg-----------l~~CRqCFre~ 42 (50) T 3jyv_N 23 HTGLVRKYD-----------LNICRQCFREK 42 (50) T ss_dssp CSSCCSSCS-----------CSSSSHHHHHH T ss_pred CCCEEEECC-----------CHHHHHHHHHH T ss_conf 865778738-----------42178899987 No 101 >>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:1-131) Probab=34.48 E-value=31 Score=15.21 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=25.4 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 999999997299747999726981324989999999998619 Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) ++.+++..++... =++++.|||++.+. ..+++..+++. T Consensus 84 ~~~i~~~~~~g~~--V~~l~~GDP~~y~~--~~~l~~~~~~~ 121 (131) T 2qbu_A 84 ARMVAAELEDGRD--VAFITLGDPSIYST--FSYLQQRIEDM 121 (131) T ss_dssp HHHHHHHHHTTCC--EEEEESBCTTBSCS--HHHHHHHHHHT T ss_pred HHHHHHHHHCCCE--EEEEECCCCCCCCC--HHHHHHHHHCC T ss_conf 9999999867987--99983443211133--01245554325 No 102 >>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica hm-1} PDB: 3bm5_A* (A:55-163) Probab=34.42 E-value=31 Score=15.20 Aligned_cols=88 Identities=10% Similarity=-0.033 Sum_probs=51.7 Q ss_pred HHHHHHHHHHC---CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCE Q ss_conf 99999999729---974799972698132498999999999861998128987434356343433999999986259938 Q gi|254781065|r 131 TEAALAYIQEK---SQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPV 207 (352) Q Consensus 131 ~~~~~~Yi~~~---~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~ 207 (352) +-...+.++++ ++-.=|--|+|. ...=-.++.++..++ .-+++|.....+..+.|+.+|-.| T Consensus 9 ~~~i~~~~~~~~~~~~~~iv~~SsGN-----~g~alA~~a~~~g~~----------~~vv~p~~~~~~k~~~l~~~GA~V 73 (109) T 2pqm_A 9 FNIVYQAIKDGRLKPGMEIIESTSGN-----TGIALCQAGAVFGYR----------VNIAMPSTMSVERQMIMKAFGAEL 73 (109) T ss_dssp HHHHHHHHHHTSSCTTCEEEEECSSH-----HHHHHHHHHHHHTCC----------EEEEEETTSCHHHHHHHHHTTCEE T ss_pred HHHHHHHHHCCCCCCCCEEEEEEECC-----HHHHHHHHHHHHCCC----------CCCHHHCCCCHHHHHHHHCCCCCC T ss_conf 99999998658457997899854261-----132689999985135----------201221135667654220357641 Q ss_pred EEEECCCCHHHCCHHHHHHHHHHHHCCCE Q ss_conf 99933699588699999999999987989 Q gi|254781065|r 208 YIAIHANHPYEFSEEAIAAISRLANAGII 236 (352) Q Consensus 208 ~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~ 236 (352) .++.+-+..+| ....|-+...+.|.. T Consensus 74 ~~v~~~~~~~~---~~~~a~~~~~~~~~~ 99 (109) T 2pqm_A 74 ILTEGKKGMPG---AIEEVNKMIKENPGK 99 (109) T ss_dssp EEECGGGHHHH---HHHHHHHHHHHSTTT T ss_pred EEECCCCCCCC---CCCCCCCCCCCCCCC T ss_conf 01035566544---322332100003662 No 103 >>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} (A:) Probab=33.89 E-value=32 Score=15.15 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -.++.++++.++++++|+-||+||.+. T Consensus 38 ~~~l~~al~~~~~d~~v~~viltg~g~ 64 (280) T 1pjh_A 38 YIYLGELLELADRNRDVYFTIIQSSGR 64 (280) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECBTT T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999997499976999976998 No 104 >>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247) Probab=33.76 E-value=32 Score=15.13 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=72.4 Q ss_pred HHHHHHHHHC-CCEEEEEEECCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEECCEEEE----EHHHCCHHHHHHHHHCCC Q ss_conf 9999999729-9747999726981324-989999999998619981289874343563----434339999999862599 Q gi|254781065|r 132 EAALAYIQEK-SQIWEVIFTGGDPLIL-SHKRLQKVLKTLRYIKHVQILRFHSRVPIV----DPQRINPELIQCLKEAGK 205 (352) Q Consensus 132 ~~~~~Yi~~~-~eI~eVilSGGDPl~l-~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~----~P~Rit~~L~~~l~~~~~ 205 (352) ..+.+|+.++ +.-+.|.+=+|++-.. +..+..-+.+.+++-.-...+.......-. --++....+.+.+.+... T Consensus 6 ~~a~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (141) T 3l49_A 6 AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGD 85 (141) T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTS T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999974999779999267555225699999999998789982453352034787689999999999986124676 Q ss_pred CEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHH Q ss_conf 38999336995886999999999999879898232798623457889999999999 Q gi|254781065|r 206 PVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTF 261 (352) Q Consensus 206 ~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L 261 (352) +..+.++ -+..+..+++.|+++|.. -|.+=|++|+...|....... T Consensus 86 ~~ai~~~------~d~~a~g~~~al~~~g~~----di~ivg~d~~~~~lt~I~~~~ 131 (141) T 3l49_A 86 VGAIWAC------WDVPMIGATQALQAAGRT----DIRTYGVDGSPEFVEMVADPE 131 (141) T ss_dssp CCEEEES------SHHHHHHHHHHHHHTTCC----SCEEEEEECCHHHHHHHHCTT T ss_pred CCEEEEC------CCHHHHHHHHHHHHHCCC----CCEEEEECCCHHHHHHHHCCC T ss_conf 7569967------867899999999982999----857999849989999997699 No 105 >>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} (A:) Probab=33.06 E-value=20 Score=16.60 Aligned_cols=12 Identities=17% Similarity=0.146 Sum_probs=5.1 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999861 Q gi|254781065|r 160 KRLQKVLKTLRY 171 (352) Q Consensus 160 ~~L~~ll~~L~~ 171 (352) ++|..++++|.+ T Consensus 142 ~~L~~~i~~Lk~ 153 (278) T 3gk0_A 142 DAVRAACKQLAD 153 (278) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 789999999987 No 106 >>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:61-162) Probab=32.84 E-value=33 Score=15.03 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHHH-HHCCCCCEEEEE Q ss_conf 899999999997299747999726981-324-----98999999999-861998128987 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLKT-LRYIKHVQILRF 180 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~~-L~~i~hv~~IRi 180 (352) .+.+++..+.|++.|+|.++-..-||. +++ +...+..++.+ |..++.|..++= T Consensus 22 ~~~~~~~~~~l~~~p~V~~~~~vtG~~D~~l~v~~~d~~~l~~~i~~~l~~~~gv~~~~T 81 (102) T 2p5v_A 22 KDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDXNAFSHFVLDTLLSHHGVQDAQS 81 (102) T ss_dssp TTHHHHHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEE T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 113999999987699499853148888899999989999999999999736899759999 No 107 >>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} (A:) Probab=32.65 E-value=33 Score=15.01 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=28.6 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 699999999999987989823279862345788999999999 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) +|++=.++++.|.+.|+.+..|.|= +|+...|.++.++ T Consensus 123 l~~eE~~~l~~l~~~Gv~v~~q~vP----~~~~~~~~~~~~k 160 (163) T 1ble_A 123 VTEQDIKAFETLSDKGVKLELRQLP----SDASEDFVQILRN 160 (163) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHT T ss_pred ECHHHHHHHHHHHHCCCEEEEEECC----CCCHHCHHHHHHH T ss_conf 0899999999999769879999895----9962069999976 No 108 >>1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-290) Probab=32.65 E-value=33 Score=15.01 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) ..++.++++.+.++++|+=|||+|..+ T Consensus 66 ~~~l~~al~~~~~d~~v~~viltg~G~ 92 (290) T 1q52_A 66 VDELYRVLDHARMSPDVGVVLLTGNGP 92 (290) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEECCC T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 999999999997499974899956887 No 109 >>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} (A:1-85,A:215-288) Probab=32.61 E-value=33 Score=15.01 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 9999999997299747999726981324989999999998 Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTL 169 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L 169 (352) ...++++.+++. .+.=+|.||.. .....++++.+ T Consensus 25 ~~~e~l~~L~~~-Gi~l~ivTgr~-----~~~~~~ll~~~ 58 (159) T 1nrw_A 25 ENENALRQAQRD-GIEVVVSTGRA-----HFDVXSIFEPL 58 (159) T ss_dssp HHHHHHHHHHHT-TCEEEEECSSC-----HHHHHHHHGGG T ss_pred HHHHHHHHHHHC-CCEEEEECCCC-----HHHHHHHHHHH T ss_conf 999999999978-99999997999-----89999999982 No 110 >>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast structural genomics consortium, NESG, protein structure initiative; 2.80A {Pseudomonas putida KT2440} (A:147-296) Probab=32.55 E-value=20 Score=16.62 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=30.1 Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEE Q ss_conf 99999986259938999336995886999999999999879898 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL 237 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v 237 (352) ++.++.+++.+-.-.+.||++|-+....+..+..++....|+.+ T Consensus 105 ~ea~~~a~~~~~k~~~ltH~s~~~~~~~~~~~e~~~~~~~gi~v 148 (150) T 1xto_A 105 GGXLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEV 148 (150) T ss_dssp SSHHHHGGGCCSSEEEEESBCTTCGGGSTTCHHHHHHHHTTEEE T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCEEE T ss_conf 99999998579983999966999834361869998654379099 No 111 >>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:275-457) Probab=32.30 E-value=34 Score=14.97 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=88.5 Q ss_pred CEEEEEEC--CCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 53799972--7430000011223301255556789899999999997299747999726981324989999999998619 Q gi|254781065|r 95 DRILLKLL--HVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 95 ~rvLl~~t--~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) +|+.++.. +.+.+-+-.|.+...-- ..++.+..++.-+++-..-.+.+-|=.||+. +.+.+...++.+.+- T Consensus 20 ~riavis~sGG~~~l~aD~~~~~Gl~l----~~l~~~t~~~L~~~lP~~~~~~NPiD~~~~a---~~~~~~~~l~~~~~d 92 (183) T 2csu_A 20 NKVAIXTNAGGPGVLTADELDKRGLKL----ATLEEKTIEELRSFLPPXAAVKNPVDXIASA---RGEDYYRTAKLLLQD 92 (183) T ss_dssp SEEEEEESCHHHHHHHHHHHHTTTCEE----CCCCHHHHHHHHHHSCTTCEESSEEECCTTC---CHHHHHHHHHHHHHS T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHCCHHHHCCCCCCCCCCC---CHHHHHHHHHHHHCC T ss_conf 816999678348899999999869987----7788889987874134123025765567888---979999999999739 Q ss_pred CCCEEEEEECCEEEEEHHH---CCHHHHHHHHH--CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC Q ss_conf 9812898743435634343---39999999862--59938999336995886999999999999879898232 Q gi|254781065|r 173 KHVQILRFHSRVPIVDPQR---INPELIQCLKE--AGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 (352) Q Consensus 173 ~hv~~IRi~TR~pv~~P~R---it~~L~~~l~~--~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ 240 (352) |.+..+=+..=.+...|.. .-..+++..++ .+||+.++.-- ...+.++.+.|.++||++... T Consensus 93 p~vd~v~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~kPi~~~~~g------~~~~~~~~~~l~~~gip~f~~ 159 (183) T 2csu_A 93 PNVDXLIAICVVPTFAGXTLTEHAEGIIRAVKEVNNEKPVLAXFXA------GYVSEKAKELLEKNGIPTYER 159 (183) T ss_dssp TTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEEC------TTTTHHHHHHHHTTTCCEESS T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC------CCCHHHHHHHHHHCCCCCCCC T ss_conf 9989899997477656777269999999999984899978999899------865199999998689985799 No 112 >>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} (A:) Probab=32.21 E-value=34 Score=14.96 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=7.7 Q ss_pred HHHHCCCCCEEEEEEC Q ss_conf 9986199812898743 Q gi|254781065|r 167 KTLRYIKHVQILRFHS 182 (352) Q Consensus 167 ~~L~~i~hv~~IRi~T 182 (352) ..+..||++.-+-||- T Consensus 201 ~~i~~ip~i~ElnIGH 216 (243) T 1m5w_A 201 KAIAAIPEMHELNIGH 216 (243) T ss_dssp HHHHTCTTEEEEEECH T ss_pred HHHHCCCCCEEEECCH T ss_conf 9984389976984579 No 113 >>1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} (A:138-245) Probab=31.98 E-value=34 Score=14.94 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=55.8 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHH Q ss_conf 79997269813249899999999986199812898743435634343399999998625993899933699588699999 Q gi|254781065|r 145 WEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAI 224 (352) Q Consensus 145 ~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~ 224 (352) .=|--|.| +...=-.+..++..++ .-+++|....++..++++.++-.+..+--.-++....+... T Consensus 26 ~vv~aSsG-----N~g~alA~~a~~~G~~----------~~v~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~ 90 (108) T 1jbq_A 26 TIIEPTSG-----NTGIGLALAAAVRGYR----------CIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVG 90 (108) T ss_dssp EEEEECSS-----HHHHHHHHHHHHHTCE----------EEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHH T ss_pred EEEEECCC-----HHHHHHHHHHHHCCCC----------EEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH T ss_conf 99997967-----9999999999981996----------79995576628999999962977999168766435799999 Q ss_pred HHHHHHHHCCCE-EEEC Q ss_conf 999999987989-8232 Q gi|254781065|r 225 AAISRLANAGII-LLSQ 240 (352) Q Consensus 225 ~A~~~L~~~Gv~-v~nQ 240 (352) +|.+...+.|.. +.|| T Consensus 91 ~a~~~a~~~~~~~~~~q 107 (108) T 1jbq_A 91 VAWRLKNEIPNSHILDQ 107 (108) T ss_dssp HHHHHHHHSTTEECCCT T ss_pred HHHHHHHHCCCCCCCCC T ss_conf 99999985499560688 No 114 >>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* (A:1-211) Probab=31.53 E-value=35 Score=14.89 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -+++.++++.+.++++++=|||+|..+ T Consensus 38 ~~~l~~~~~~~~~d~~v~~vvl~g~g~ 64 (211) T 2j5i_A 38 NREMIDVLETLEQDPAAGVLVLTGAGE 64 (211) T ss_dssp HHHHHHHHHHHHTCTTEEEEEEEESTT T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999997399952999964543 No 115 >>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} (A:1-115,A:225-301) Probab=30.90 E-value=35 Score=14.81 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=12.8 Q ss_pred CHHHCCHHHHHHHHHHHHCCCEE Q ss_conf 95886999999999999879898 Q gi|254781065|r 215 HPYEFSEEAIAAISRLANAGIIL 237 (352) Q Consensus 215 Hp~Elt~~~~~A~~~L~~~Gv~v 237 (352) +-.|+.|++.+++++|+++|+.+ T Consensus 42 ~~~~i~~~~~~~l~~l~~~g~~i 64 (192) T 2b30_A 42 KDIKVPSENIDAIKEAIEKGYMV 64 (192) T ss_dssp TTTCSCHHHHHHHHHHHHHTCEE T ss_pred CCCCCCHHHHHHHHHHHHCCCEE T ss_conf 89934999999999999789999 No 116 >>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} (A:1-284) Probab=30.68 E-value=36 Score=14.79 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=66.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC--------CCCCC------CCH-------HHHHHHHHHHHCCCCCEE--------- Q ss_conf 899999999997299747999726--------98132------498-------999999999861998128--------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG--------GDPLI------LSH-------KRLQKVLKTLRYIKHVQI--------- 177 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG--------GDPl~------l~~-------~~L~~ll~~L~~i~hv~~--------- 177 (352) -.++.++++.++.+++++=||||| ||.-. -.. ..+..++..+...+-.-+ T Consensus 37 ~~~l~~al~~~~~d~~~~~viitg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~G 116 (284) T 1wdk_A 37 LNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALG 116 (284) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEET T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH T ss_conf 99999999999758896699997889961527388979735478867887767899999999984989899997874318 Q ss_pred ----------EEEECCEEE-EEHHH-C--------CHHHHHHH--------HHCCCCE--------EEEECCCCHHHCCH Q ss_conf ----------987434356-34343-3--------99999998--------6259938--------99933699588699 Q gi|254781065|r 178 ----------LRFHSRVPI-VDPQR-I--------NPELIQCL--------KEAGKPV--------YIAIHANHPYEFSE 221 (352) Q Consensus 178 ----------IRi~TR~pv-~~P~R-i--------t~~L~~~l--------~~~~~~~--------~iv~H~NHp~Elt~ 221 (352) +||.+.... .+|+- + +..|.+.+ --.++++ -+|..+--+.|+.. T Consensus 117 gG~~lalacD~ria~~~a~~~~pe~~~G~~p~~~~~~~l~r~~g~~~a~~~l~~g~~~~a~eA~~~GlV~~vv~~~el~~ 196 (284) T 1wdk_A 117 GGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGA 196 (284) T ss_dssp HHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHH T ss_pred HHHHHHHHCCEEEECCCCEEECCCEECCCCCCCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHH T ss_conf 99999996899998199799733030001258876555201057333444412231045999985226661388889999 Q ss_pred HHHHHHHHHHHCCCEEE--ECHHHHHCCCCCHHH Q ss_conf 99999999998798982--327986234578899 Q gi|254781065|r 222 EAIAAISRLANAGIILL--SQSVLLKGINDDPEI 253 (352) Q Consensus 222 ~~~~A~~~L~~~Gv~v~--nQsVLLkgVND~~~~ 253 (352) ++.+-++.+.+...... ....+-++...+.+. T Consensus 197 ~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~ 230 (284) T 1wdk_A 197 AALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQ 230 (284) T ss_dssp HHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHH T ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHH T ss_conf 9999999985299864443330355544210245 No 117 >>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (B:238-388) Probab=30.42 E-value=36 Score=14.76 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=19.9 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 989999999999729974799972698132498999999999861 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +.+.+.++++.+.++|+++-|++.++=+..........++..+.+ T Consensus 57 ~~~~~~~~l~~~~~d~~vd~i~v~~~~~~~~~~~~~~~i~~~~~~ 101 (151) T 2nu8_B 57 TKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAE 101 (151) T ss_dssp CHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 799999999999759987689999856601089999999999997 No 118 >>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264) Probab=30.28 E-value=25 Score=15.94 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=8.1 Q ss_pred CCHHHHHHHHHHHHCCCE Q ss_conf 699999999999987989 Q gi|254781065|r 219 FSEEAIAAISRLANAGII 236 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~ 236 (352) .-|++.+++++|++.|+. T Consensus 22 ~~~~~~e~l~~l~~~G~~ 39 (154) T 3epr_A 22 RIPAGERFIERLQEKGIP 39 (154) T ss_dssp ECHHHHHHHHHHHHHTCC T ss_pred CCCCHHHHHHHHHHCCCC T ss_conf 282599999999987998 No 119 >>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A (C:) Probab=29.98 E-value=37 Score=14.71 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.8 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 699999999999987989823279862345788999999999 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) +|++=.++++.|.+.|+.+..|.+= +|+...+.++.++ T Consensus 125 l~~ee~e~lk~l~~~Gv~i~~Q~vP----~~~~~~~~~~lkk 162 (165) T 1vsq_C 125 VDEKDIEAFKKLNARGIELEVRKVS----TDPKLKMMDLISK 162 (165) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHT T ss_pred CCHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHH T ss_conf 3999999999999769879999896----9970379999987 No 120 >>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* (A:1-88,A:193-246) Probab=29.85 E-value=37 Score=14.70 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=12.2 Q ss_pred CCHHHCCHHHHHHHHHHHHCCCEE Q ss_conf 995886999999999999879898 Q gi|254781065|r 214 NHPYEFSEEAIAAISRLANAGIIL 237 (352) Q Consensus 214 NHp~Elt~~~~~A~~~L~~~Gv~v 237 (352) ++-..+++++.+|+++|++.|+.+ T Consensus 17 ~~~~~i~~~~~~~L~~l~~kGv~i 40 (142) T 3f9r_A 17 PPRLCQTDEMRALIKRARGAGFCV 40 (142) T ss_dssp STTSCCCHHHHHHHHHHHHTTCEE T ss_pred CCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 899978999999999998489999 No 121 >>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} (A:476-580) Probab=29.44 E-value=37 Score=14.65 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=25.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEE---ECC-CCCCCE Q ss_conf 1869999999999998288865410663---178-888823 Q gi|254781065|r 284 RLTIEEGQKIVASLKEKISGLCQPFYIL---DLP-GGYGKV 320 (352) Q Consensus 284 ~v~~~~~~~i~~~l~~~lsG~~~P~~v~---d~p-~~~GKv 320 (352) ..+-....++.+.++..++.|.+|.+++ ++| ...||+ T Consensus 53 ~~~~~~~~~~~~~~~~~l~~~~~P~~~~~v~~lP~t~sgKi 93 (105) T 3etc_A 53 TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKI 93 (105) T ss_dssp CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------- T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC T ss_conf 97878999999999856888758619999798787988773 No 122 >>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:54-150) Probab=29.31 E-value=38 Score=14.63 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=42.8 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-----CHHHHHHHHH-HHHCCCCCEEEEEEC Q ss_conf 9899999999997299747999726981-324-----9899999999-986199812898743 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDP-LIL-----SHKRLQKVLK-TLRYIKHVQILRFHS 182 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDP-l~l-----~~~~L~~ll~-~L~~i~hv~~IRi~T 182 (352) +...+++..+.+++.|+|.++-..-||. +++ +.+.|..++. .+..+|+|..+.-+. T Consensus 21 ~~~~~~~~~~~l~~~~~v~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~~i~~~~gv~~~~t~i 83 (97) T 2pn6_A 21 GKNYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQV 83 (97) T ss_dssp CTTHHHHHHHHHHTSTTEEEEEECSSSCSEEEEEEESSHHHHHHHTHHHHTTCTTEEEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 067789999999848642666641589888999997999999999999973899973899999 No 123 >>2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str} (A:) Probab=29.06 E-value=38 Score=14.60 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=40.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHH-HHHHCCCCCEEEE Q ss_conf 89999999999729974799972698132------4989999999-9986199812898 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVL-KTLRYIKHVQILR 179 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll-~~L~~i~hv~~IR 179 (352) ...+++..+.|++.|+|.++-..-|+.=. -+.+.|..++ +.|..+|.|...+ T Consensus 12 ~~~~~~~~~~l~~~peV~~~~~vtG~~D~i~~v~~~d~~~l~~~i~~~l~~~~gV~~~~ 70 (83) T 2zbc_A 12 AGGEDEVFERLKSXSEVTEVHVVYGVYDIVVKVEADSXDKLKDFVTNTIRKLPKVRSTL 70 (83) T ss_dssp TTCHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEE T ss_pred CCCHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 89999999999769772489991087629999999999999999999872599983699 No 124 >>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} (A:1-199) Probab=29.06 E-value=38 Score=14.60 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------H---------HHHHHHHHHHHCCCCCE Q ss_conf 8999999999972997479997269813249--------8---------99999999986199812 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS--------H---------KRLQKVLKTLRYIKHVQ 176 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~--------~---------~~L~~ll~~L~~i~hv~ 176 (352) -.++.++++.++++++++=|++||+.+.-.+ . .....++..+...|-.- T Consensus 32 ~~~l~~~l~~~~~d~~~~vvvl~g~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~ 97 (199) T 2ej5_A 32 NAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPV 97 (199) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCE T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 999999999997499933999733432200102288864200012566641126778888529848 No 125 >>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} (A:1-230) Probab=28.98 E-value=35 Score=14.82 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=31.9 Q ss_pred CCCEEECCCEEEEEECCC-CCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 871452075379997274-300000112233012555567898999999999972997479997269 Q gi|254781065|r 87 KGIVHRYPDRILLKLLHV-CPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 87 pgl~hkY~~rvLl~~t~~-C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) +.+.-...+.++.++-++ ...| -. + .. -.+++.++++.++++++++=|||+|+ T Consensus 33 ~~i~~~~~~~va~i~l~~p~~~N--------a~-~--~~--~~~~l~~~l~~~~~d~~v~~vil~g~ 86 (230) T 2vx2_A 33 RPTSARQLDGIRNIVLSNPKKRN--------TL-S--LA--MLKSLQSDILHDADSNDLKVIIISAE 86 (230) T ss_dssp CSEEEEEETTEEEEEECCGGGTT--------CC-C--HH--HHHHHHHHHHTTTTCTTCCEEEEEES T ss_pred CCEEEEEECCEEEEEECCCCCCC--------CC-C--HH--HHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 64267731998999974778679--------99-9--99--99999999999852999669999668 No 126 >>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} (A:39-143) Probab=28.86 E-value=38 Score=14.58 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=40.4 Q ss_pred ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC Q ss_conf 434356343433999999986259938999336995886999999999999879898232 Q gi|254781065|r 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 (352) Q Consensus 181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ 240 (352) |-+.-++.|.-..++..+.++.++-.|.++.+-. ...+....|-+-..+.|....|| T Consensus 47 G~~~~ivvp~~~~~~k~~~l~~~GA~V~~v~~~~---~~~~~~~~a~~~~~~~g~~~~~~ 103 (105) T 1y7l_A 47 GYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK---GMKGAIAKAEEIVASDPSRYVML 103 (105) T ss_dssp TCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGG---HHHHHHHHHHHHHHHCTTTEECC T ss_pred CCCCCEEEHHHHHHHHHHHHHHCCCCEEECCCCC---CCCHHHHHHHHHHHHCCCCCCCC T ss_conf 4554111012345777766650476148406665---64115666410002104655466 No 127 >>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D (A:) Probab=28.21 E-value=39 Score=14.50 Aligned_cols=108 Identities=18% Similarity=0.090 Sum_probs=61.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC--------CCCCCCC----HH-------HHHHHHHHHHCCCCC------------- Q ss_conf 899999999997299747999726--------9813249----89-------999999998619981------------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG--------GDPLILS----HK-------RLQKVLKTLRYIKHV------------- 175 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG--------GDPl~l~----~~-------~L~~ll~~L~~i~hv------------- 175 (352) -+++.++++.++++++++=||||| ||.-.+. .. .+..++..+...|-. T Consensus 53 ~~~l~~al~~~~~~~~v~~vvltg~g~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~p~Iaav~G~a~GgG 132 (263) T 2j5g_A 53 HREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS 132 (263) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEECSCG T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCHHHHHCCCHHHHHHH T ss_conf 99999999999729996199986245431111100001333233322012221002222023466034302211444455 Q ss_pred ------EEEEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCCCE--------EEEECCCCHHHCCHHH Q ss_conf ------289874343563-434-----------------33999999986259938--------9993369958869999 Q gi|254781065|r 176 ------QILRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGKPV--------YIAIHANHPYEFSEEA 223 (352) Q Consensus 176 ------~~IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~~~--------~iv~H~NHp~Elt~~~ 223 (352) -.+||.++-..+ .|+ ++.......+--.+..+ -++...--+.|+.+++ T Consensus 133 ~~lal~~D~ria~~~~~f~~p~~~~g~~p~~g~~~~l~~~~g~~~a~~~l~~g~~~~a~~A~~~Glv~~vv~~~~l~~~a 212 (263) T 2j5g_A 133 EYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERA 212 (263) T ss_dssp GGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH T ss_conf 66640035556454333110233333222222222222233321024331023200000002152788963742899999 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998798 Q gi|254781065|r 224 IAAISRLANAGI 235 (352) Q Consensus 224 ~~A~~~L~~~Gv 235 (352) .+..++|.+.+- T Consensus 213 ~~~a~~la~~~~ 224 (263) T 2j5g_A 213 WEIARTLAKQPT 224 (263) T ss_dssp HHHHHHHHTSCH T ss_pred HHHHHHHHCCCH T ss_conf 999999985899 No 128 >>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} (A:1-119,A:270-304) Probab=28.15 E-value=35 Score=14.84 Aligned_cols=126 Identities=13% Similarity=0.035 Sum_probs=69.3 Q ss_pred HHHHHHHHHCCCCCEEEEEECCEEEEE---HHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEE Q ss_conf 999999986199812898743435634---34339999999862599389993369958869999999999998798982 Q gi|254781065|r 162 LQKVLKTLRYIKHVQILRFHSRVPIVD---PQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILL 238 (352) Q Consensus 162 L~~ll~~L~~i~hv~~IRi~TR~pv~~---P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~ 238 (352) =..++..|.+.++++.+-+..+.|-.. ..+.+....+.+... . +.+++.. +..-.+.+.+..++|+.++ T Consensus 15 G~~~~~~l~~~~~~eiVav~d~~~~~~~~~~~~~~~~~~~~~~~~-d-~~~i~t~------~~~h~~~~~~al~aG~~Vl 86 (154) T 1f06_A 15 GRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDV-D-VLFLCMG------SATDIPEQAPKFAQFACTV 86 (154) T ss_dssp HHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTC-S-EEEECSC------TTTHHHHHHHHHTTTSEEE T ss_pred HHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCHHHHHHCCCC-C-EEEECCC------CCCCHHHHHHHHHCCCCEE T ss_conf 999999997399979999997776757788860306699745589-9-9998998------6267999999998699899 Q ss_pred ECHHHHHCCCCCHHHHHHHHHHHHHCCCE--EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 32798623457889999999999986982--423011345765210118699999999999982888 Q gi|254781065|r 239 SQSVLLKGINDDPEILANLMRTFVELRIK--PYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISG 303 (352) Q Consensus 239 nQsVLLkgVND~~~~l~~L~~~L~~~gV~--PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG 303 (352) ...++-..+-| ....|.+.--+.|+. +-|-|.+|-.... .++-|+.-.+--++.-|| T Consensus 87 vEKP~a~s~~E---~a~~l~~aa~~~gv~~~v~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 145 (154) T 1f06_A 87 DTYDNHRDIPR---HRQVMNEAATAAGNVALVSTGWNPDFTASS-----QIAFGRAAHRMKQQGQSG 145 (154) T ss_dssp CCCCCGGGHHH---HHHHHHHHHHHHTCEEECSCSBHHHHHHHH-----HHHHHHHHHHHHHTTCCE T ss_pred ECCCCCCCCHH---HHHHHHHHHHHCCCEEEEECCCCCCHHHHH-----HHHHHHHHHHHHHCCCCC T ss_conf 88875343178---999999999973988999578494168999-----999999998887546998 No 129 >>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231) Probab=28.05 E-value=36 Score=14.74 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 99999999997299747999726981324989999999998619981 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHV 175 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv 175 (352) +...++++.++++ .+.=++.||. +......+++++.--..+ T Consensus 23 ~~~~e~l~~l~~~-Gi~~~i~Tgr-----~~~~~~~~l~~~~~~~~~ 63 (162) T 1wr8_A 23 EKALEAIRRAESL-GIPIMLVTGN-----TVQFAEAASILIGTSGPV 63 (162) T ss_dssp HHHHHHHHHHHHT-TCCEEEECSS-----CHHHHHHHHHHHTCCSCE T ss_pred HHHHHHHHHHHHC-CCEEEEEECC-----CCCCCHHHHHHCCCCCCE T ss_conf 9999999999857-9909999357-----500102245532776752 No 130 >>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, enzyme kinetics, X-RAY diffraction; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* (A:38-146) Probab=28.01 E-value=39 Score=14.48 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=40.8 Q ss_pred CCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH Q ss_conf 343563434339999999862599389993369958869999999999998798982327 Q gi|254781065|r 182 SRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS 241 (352) Q Consensus 182 TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs 241 (352) -+.-+++|.....+..+.++.++-.+.++.+-.-.. +....|-+-..+.|....||- T Consensus 48 ~~~~iv~p~~~~~~k~~~l~~~Ga~V~~v~~~~~~~---~~~~~a~~la~~~g~~~~~~f 104 (109) T 2v03_A 48 YRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME---GARDLALEMANRGEGKLLDQF 104 (109) T ss_dssp CEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHH---HHHHHHHHHHHTTSCEECCTT T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHH---HHHHHHHHHCCCCCCCCCCCC T ss_conf 870452125512676699998589763000353214---678876420245543455543 No 131 >>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} (A:126-227) Probab=27.84 E-value=40 Score=14.46 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=32.5 Q ss_pred HHHHHHHHHCCCCEEEEECCCCH--HHCCHHHHHHHHH-HHHCCCEEEECHHH Q ss_conf 99999986259938999336995--8869999999999-99879898232798 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHP--YEFSEEAIAAISR-LANAGIILLSQSVL 243 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp--~Elt~~~~~A~~~-L~~~Gv~v~nQsVL 243 (352) -|+...|.+.++++.++.--+++ +.++++..+.+.+ +++.|+.+..++-+ T Consensus 34 lE~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v 86 (102) T 3klj_A 34 IELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF 86 (102) T ss_dssp HHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCG T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCEE T ss_conf 78999999629927999961531123357899999999876277599958799 No 132 >>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} (A:) Probab=27.44 E-value=40 Score=14.41 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999999729974799972698 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) -.++.++++.++++++++=||+||.. T Consensus 33 ~~~l~~~l~~~~~d~~~~~vii~g~g 58 (260) T 1sg4_A 33 LTELVISLEKLENDKSFRGVILTSDR 58 (260) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 99999999999739995699996576 No 133 >>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix K1} (A:124-225) Probab=27.43 E-value=40 Score=14.41 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=41.4 Q ss_pred ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC Q ss_conf 434356343433999999986259938999336995886999999999999879898232 Q gi|254781065|r 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 (352) Q Consensus 181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ 240 (352) |-+.-++.|..+..+..+.++.++-.|.++..-.. ..+....|.+-..+.|....|| T Consensus 45 g~~~~i~~p~~~~~~k~~~l~~~GA~V~~v~~~~~---~~~~~~~a~~~a~~~g~~~~~q 101 (102) T 1wkv_A 45 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPS---TVHLLPRVMKDSKNEGFVHVNQ 101 (102) T ss_dssp TCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSS---SGGGHHHHHHHHHHHCCEECCT T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCCH---HHHHHHHHHHHHCCCCCCCCCC T ss_conf 99689998300013455566405862366487413---5788998765302457542223 No 134 >>3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} (A:1-265) Probab=27.19 E-value=41 Score=14.38 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=58.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEE-CCCC-------CC-CCH------------HHHHHHHHHHHCCCCCE---------- Q ss_conf 89999999999729974799972-6981-------32-498------------99999999986199812---------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFT-GGDP-------LI-LSH------------KRLQKVLKTLRYIKHVQ---------- 176 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilS-GGDP-------l~-l~~------------~~L~~ll~~L~~i~hv~---------- 176 (352) .+++.++++.+.++++++=|||+ ||+- +. +.. .....+...+..+|-.- T Consensus 56 ~~~l~~~~~~~~~d~~~~~vVl~~g~~~~Fs~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaav~G~a~G 135 (265) T 3h02_A 56 VKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIG 135 (265) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEEEEECSEEET T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEC T ss_conf 99999999998629885179995798830004510777642254320134543100367887623588289995070442 Q ss_pred ---------EEEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCH Q ss_conf ---------89874343563-434-----------------3399999998625993--------899933699588699 Q gi|254781065|r 177 ---------ILRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSE 221 (352) Q Consensus 177 ---------~IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~ 221 (352) .+||.+..-.+ .|+ ++-......+--.++. .-+|..+--+.|+.+ T Consensus 136 gG~~lal~~D~~ia~~~a~f~~~~~~~G~~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~ 215 (265) T 3h02_A 136 GGHVLHXXCDLTIAAENAIFGQTGPKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVPLADLEK 215 (265) T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHH T ss_pred CCCCEEECCCEEEECCCCEEECHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHH T ss_conf 64310114541241698689871330071457624556777707999999997397044999997897888655676536 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999999879 Q gi|254781065|r 222 EAIAAISRLANAG 234 (352) Q Consensus 222 ~~~~A~~~L~~~G 234 (352) ++.+-.+++.+.. T Consensus 216 ~a~~~a~~~~~~~ 228 (265) T 3h02_A 216 ETVRWCREXLQNS 228 (265) T ss_dssp HHHHHHHHHHTSC T ss_pred HHHHHHHHHCCCC T ss_conf 7888876532588 No 135 >>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290) Probab=26.89 E-value=41 Score=14.35 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 9999999999729974799972698132498999999999861 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +...++++++++. .+.=++.||. +......++..+.- T Consensus 26 ~~~~e~l~~l~~~-Gi~~~ivTgr-----~~~~~~~~l~~lgl 62 (175) T 3dnp_A 26 QATKDAIEYVKKK-GIYVTLVTNR-----HFRSAQKIAKSLKL 62 (175) T ss_dssp HHHHHHHHHHHHT-TCEEEEBCSS-----CHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHC-CCEEEEECCC-----CHHHHHHHHHHHCC T ss_conf 9999999999978-9999998999-----88999999998099 No 136 >>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264) Probab=26.88 E-value=36 Score=14.75 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=10.9 Q ss_pred HCCHHHHHHHHHHHHCCCEE Q ss_conf 86999999999999879898 Q gi|254781065|r 218 EFSEEAIAAISRLANAGIIL 237 (352) Q Consensus 218 Elt~~~~~A~~~L~~~Gv~v 237 (352) +..|.+.+++++|+++|+.+ T Consensus 21 ~~~p~~~e~l~~L~~~Gi~~ 40 (154) T 1yv9_A 21 EPIPAGKRFVERLQEKDLPF 40 (154) T ss_dssp EECHHHHHHHHHHHHTTCCE T ss_pred CCCCCHHHHHHHHHHCCCCE T ss_conf 83813999999999779978 No 137 >>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} (A:) Probab=26.72 E-value=42 Score=14.33 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.2 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 699999999999987989823279862345788999999999 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) +|++=.++++.|.+.|+.+.-|.+= +|....|.++.++ T Consensus 122 l~~ee~~~lk~l~~~Gv~v~~q~vP----~~~~~~l~~~lkk 159 (164) T 1nrz_A 122 LDPQDIQAFRELDKLGVKLDLRVVA----SDPSVNILDKINE 159 (164) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSST----TSCCBCHHHHHHT T ss_pred CCHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHH T ss_conf 1999999999999779879999895----9970269999977 No 138 >>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} (A:266-342) Probab=26.59 E-value=27 Score=15.64 Aligned_cols=18 Identities=0% Similarity=-0.007 Sum_probs=14.4 Q ss_pred HHCCCEEEEEEECCCCCC Q ss_conf 729974799972698132 Q gi|254781065|r 139 QEKSQIWEVIFTGGDPLI 156 (352) Q Consensus 139 ~~~~eI~eVilSGGDPl~ 156 (352) +++||..-+|+.||+|-. T Consensus 17 ~~nPd~T~LLIaGG~p~~ 34 (77) T 2oaj_A 17 ENNPEYTSLLISHKSISR 34 (77) T ss_dssp CSSTTEEEEEEEEECSTT T ss_pred CCCCCCCEEEEECCCCCC T ss_conf 479984289971487744 No 139 >>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306) Probab=26.48 E-value=42 Score=14.30 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=47.4 Q ss_pred HCCHHHHHHHHHCCCCEEEEECCCC--HHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 3399999998625993899933699--58869999999999998798982327986234578899999999999869824 Q gi|254781065|r 191 RINPELIQCLKEAGKPVYIAIHANH--PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKP 268 (352) Q Consensus 191 Rit~~L~~~l~~~~~~~~iv~H~NH--p~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~P 268 (352) .++++-++-+.+.-+.++.-..-+. -.++.|.+.+.+++|++.|+++.-=| |.+......+.++|-..|+.. T Consensus 8 ~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~ivT------n~~~~~~~~~~~~L~~~Gl~~ 81 (166) T 2oyc_A 8 RLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVS------NNSRRARPELALRFARLGFGG 81 (166) T ss_dssp ECCHHHHHHHHHHCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEE------CCCSSCHHHHHHHHHHTTCCS T ss_pred CCCHHHHHHHHHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEE------CCCCCCHHHHHHHHHHCCCCC T ss_conf 28987899999679999996988128899168109999999997799889995------899999999999987437764 Q ss_pred EEEEC Q ss_conf 23011 Q gi|254781065|r 269 YYLHH 273 (352) Q Consensus 269 YYl~~ 273 (352) |.=.. T Consensus 82 ~fd~i 86 (166) T 2oyc_A 82 LRAEQ 86 (166) T ss_dssp CCGGG T ss_pred CCHHH T ss_conf 32112 No 140 >>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} (A:1-221) Probab=26.21 E-value=42 Score=14.26 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=55.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCC------------------CCHHHHHHHHHHHHCCCCCE-------------- Q ss_conf 9999999999729974799972698132------------------49899999999986199812-------------- Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLI------------------LSHKRLQKVLKTLRYIKHVQ-------------- 176 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~------------------l~~~~L~~ll~~L~~i~hv~-------------- 176 (352) +++.++++.+.++++++=||++|+.+-. -.......++..+...|-.- T Consensus 34 ~~l~~~l~~~~~~~~~~~vv~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~Iaav~G~a~ggG~~ 113 (221) T 1ef8_A 34 DDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFE 113 (221) T ss_dssp HHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHH T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHH T ss_conf 99999999861799769999888888605479783533556621677999999999999978999999976812222564 Q ss_pred -----EEEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHHHHH Q ss_conf -----89874343563-434-----------------3399999998625993--------8999336995886999999 Q gi|254781065|r 177 -----ILRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEEAIA 225 (352) Q Consensus 177 -----~IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~~~~ 225 (352) .+||.|.--.+ .|+ ++.......+--.+.+ .-++..+--+.|+.+++.+ T Consensus 114 lala~D~~ia~~~a~f~~p~~~~g~~p~~~~~~~~~r~~g~~~a~~~~~~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 193 (221) T 1ef8_A 114 MIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQ 193 (221) T ss_dssp HHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHH T ss_pred HHHCCCEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHH T ss_conf 67425568873776544200356889882079999999779999999986998959999876996687484789999999 Q ss_pred HHHHHHHC Q ss_conf 99999987 Q gi|254781065|r 226 AISRLANA 233 (352) Q Consensus 226 A~~~L~~~ 233 (352) -.+++.+. T Consensus 194 ~a~~l~~~ 201 (221) T 1ef8_A 194 MAHHISEK 201 (221) T ss_dssp HHHHHTTS T ss_pred HHHHHHCC T ss_conf 99999847 No 141 >>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} (A:) Probab=25.84 E-value=43 Score=14.22 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=63.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------------------HHHHHHHHHHHHCCCC------------- Q ss_conf 8999999999972997479997269813249--------------------8999999999861998------------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS--------------------HKRLQKVLKTLRYIKH------------- 174 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~--------------------~~~L~~ll~~L~~i~h------------- 174 (352) -.++.++++.+.++++++=||++|+.+-..+ ...+..+...+...|- T Consensus 29 ~~~l~~al~~~~~d~~v~~vvi~~~~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~Gg 108 (250) T 2a7k_A 29 ETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGM 108 (250) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETH T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC T ss_conf 99999999999739993399997414533322334332223332333101233321123331012222343202345454 Q ss_pred ------CEEEEEECCEEEE-EHHHC--------CHHHHHHHH--------HCCCC--------EEEEECCCCHHHCCHHH Q ss_conf ------1289874343563-43433--------999999986--------25993--------89993369958869999 Q gi|254781065|r 175 ------VQILRFHSRVPIV-DPQRI--------NPELIQCLK--------EAGKP--------VYIAIHANHPYEFSEEA 223 (352) Q Consensus 175 ------v~~IRi~TR~pv~-~P~Ri--------t~~L~~~l~--------~~~~~--------~~iv~H~NHp~Elt~~~ 223 (352) --.+||.|....+ +|+.. ...+...+. -.++. .-++.++-.+.|+.+.+ T Consensus 109 G~~lal~~D~ria~~~a~f~~p~~~~g~~~~~~~~~l~~~ig~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~l~~~a 188 (250) T 2a7k_A 109 GFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAA 188 (250) T ss_dssp HHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCH T ss_conf 32410124312112334222223333333322222332233211232100357610799999854444322222222210 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998798 Q gi|254781065|r 224 IAAISRLANAGI 235 (352) Q Consensus 224 ~~A~~~L~~~Gv 235 (352) .+..+.+.+... T Consensus 189 ~~~a~~~~~~~~ 200 (250) T 2a7k_A 189 ITQAHVMASYPA 200 (250) T ss_dssp HHHHHHHHTSCH T ss_pred HHHHHHHHCCCH T ss_conf 357777631339 No 142 >>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} (A:445-549) Probab=25.36 E-value=35 Score=14.86 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=14.1 Q ss_pred HHHHHHHHHHCCCCCCCEEEE---ECC-CCCCCE Q ss_conf 999999998288865410663---178-888823 Q gi|254781065|r 291 QKIVASLKEKISGLCQPFYIL---DLP-GGYGKV 320 (352) Q Consensus 291 ~~i~~~l~~~lsG~~~P~~v~---d~p-~~~GKv 320 (352) ..|.+.++++++.+.+|+++. ++| ...||+ T Consensus 54 ~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi 87 (105) T 3g7s_A 54 EDIIEWVRERISGYKRVREVEFVEELPRTASGKL 87 (105) T ss_dssp HHHHHHHHTTCC-----CCCCEEEECC------- T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC T ss_conf 9999999976888888658999798787988673 No 143 >>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile 630} (A:) Probab=25.34 E-value=44 Score=14.16 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=55.3 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHH Q ss_conf 9899999999997299747999726-----98132498999999999861998128987434356343433999999986 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTG-----GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLK 201 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSG-----GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~ 201 (352) +.+++...+.+++++..-.-+|+|= |.-.-.++..-.+++.++.+...+..|-|-- ..++.+-.++.+..+ T Consensus 61 ~~~~i~~~i~~lr~~~~~~PiI~T~R~~~eGG~~~~s~~~~~~~l~~~~~~~~~d~iDiEl----~~~~~~~~~l~~~~~ 136 (258) T 3js3_A 61 NIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVEL----FMGDEVIDEVVNFAH 136 (258) T ss_dssp CHHHHHHHHHHHHHHHTTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTSCCSEEEEEG----GGCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HCCHHHHHHHHHHHH T ss_conf 8999999999999736898789997272208988899899999999999808941258887----553899999999887 Q ss_pred HCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEE Q ss_conf 25993899933699588699999999999987989823 Q gi|254781065|r 202 EAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLS 239 (352) Q Consensus 202 ~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~n 239 (352) +.+..+.+..|....---.++..+.+.++++.|.-+.- T Consensus 137 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivK 174 (258) T 3js3_A 137 KKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPK 174 (258) T ss_dssp HTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE T ss_pred HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE T ss_conf 55987999954699998999999999999974899589 No 144 >>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} (A:399-501) Probab=24.91 E-value=45 Score=14.10 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=15.8 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 69999999999998288865410663 Q gi|254781065|r 286 TIEEGQKIVASLKEKISGLCQPFYIL 311 (352) Q Consensus 286 ~~~~~~~i~~~l~~~lsG~~~P~~v~ 311 (352) +-....+|...++..++.+.+|+++. T Consensus 50 ~~~~~~~i~~~~~~~l~~~~~P~~~~ 75 (103) T 3ipl_A 50 SDISKAQLIAYLSKHLAKYKVPKHFE 75 (103) T ss_dssp SCCCHHHHHHHHHHHSCGGGSCSEEE T ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEE T ss_conf 99999999999985298567964899 No 145 >>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* (A:44-148) Probab=24.87 E-value=45 Score=14.10 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=39.7 Q ss_pred ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEE-EEC Q ss_conf 434356343433999999986259938999336995886999999999999879898-232 Q gi|254781065|r 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL-LSQ 240 (352) Q Consensus 181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v-~nQ 240 (352) |-+.-+++|....++..+.++.++-.|+++..-. -+++....|-+...+.|..+ .|| T Consensus 47 g~~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~---~~~~~~~~a~~~a~e~g~~~~~~q 104 (105) T 2q3b_A 47 GYRCVLTMPETMSLERRMLLRAYGAELILTPGAD---GMSGAIAKAEELAKTDQRYFVPQQ 104 (105) T ss_dssp TCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGG---HHHHHHHHHHHHHHHCTTEECCCT T ss_pred CCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCEECCC T ss_conf 9984685457578888347550576511146422---212110112222223344100246 No 146 >>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A (A:) Probab=24.67 E-value=45 Score=14.07 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=64.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-----------------HHHHHHHHHHHHCCCCCE-------------- Q ss_conf 8999999999972997479997269813249-----------------899999999986199812-------------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS-----------------HKRLQKVLKTLRYIKHVQ-------------- 176 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~-----------------~~~L~~ll~~L~~i~hv~-------------- 176 (352) -.++.++++.++++++++=||++||+....+ ...+..+...+...|-+- T Consensus 29 ~~~l~~~l~~~~~~~~~~~Vv~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaai~G~a~GgG~~ 108 (254) T 3gow_A 29 LDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMS 108 (254) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECEEE T ss_conf 99999999999868895899995477764211102432256531100112468888998638997599998899886135 Q ss_pred -----EEEEECCEEE-EEHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHHHHH Q ss_conf -----8987434356-3434-----------------3399999998625993--------8999336995886999999 Q gi|254781065|r 177 -----ILRFHSRVPI-VDPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEEAIA 225 (352) Q Consensus 177 -----~IRi~TR~pv-~~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~~~~ 225 (352) .+||.|..-. .+|+ ++...+...+--.+.. .-++.++....|+..++.+ T Consensus 109 la~~~D~~ia~~~~~~~~pe~~~G~~p~~g~~~~~~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~~~~ 188 (254) T 3gow_A 109 LALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALS 188 (254) T ss_dssp HHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH T ss_pred EEECCCCCEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH T ss_conf 10035400444887898700176868753599999998382100246741860159999987997561480889998765 Q ss_pred HHHHHHHCC Q ss_conf 999999879 Q gi|254781065|r 226 AISRLANAG 234 (352) Q Consensus 226 A~~~L~~~G 234 (352) ...++.+.. T Consensus 189 ~a~~~~~~~ 197 (254) T 3gow_A 189 LAKELAQGP 197 (254) T ss_dssp HHHHHHTSC T ss_pred HHHHHHHCC T ss_conf 445541011 No 147 >>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} (A:1-243) Probab=24.59 E-value=45 Score=14.06 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=65.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC----------------HH-------HHHHHHHHHHCCCCCEE------- Q ss_conf 8999999999972997479997269813249----------------89-------99999999861998128------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS----------------HK-------RLQKVLKTLRYIKHVQI------- 177 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~----------------~~-------~L~~ll~~L~~i~hv~~------- 177 (352) .+++.++++.++.+++++=||++|+.+..-+ .+ .+..+...+...|-.-+ T Consensus 32 ~~~l~~~l~~~~~d~~v~~vVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaai~G~a 111 (243) T 1nzy_A 32 MQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVA 111 (243) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEE T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 99999999999868793799997999872588558876512354320467788888899999999968998999867854 Q ss_pred ------------EEEECCEEEE-EHH-----------------HCCHHHHHHHHHCCC--------CEEEEECCCCHHHC Q ss_conf ------------9874343563-434-----------------339999999862599--------38999336995886 Q gi|254781065|r 178 ------------LRFHSRVPIV-DPQ-----------------RINPELIQCLKEAGK--------PVYIAIHANHPYEF 219 (352) Q Consensus 178 ------------IRi~TR~pv~-~P~-----------------Rit~~L~~~l~~~~~--------~~~iv~H~NHp~El 219 (352) +||.+..-.+ .|+ ++-......+--.++ ..-++..+-.+.|+ T Consensus 112 ~GgG~~la~~~D~ria~~~a~f~~p~~~~G~~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 191 (243) T 1nzy_A 112 AGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEF 191 (243) T ss_dssp ETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHH T ss_pred CCCCCEEEHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHCCCCCEECCHHHH T ss_conf 65553302410476660202213554445767883299999998090553121234787889999987995286386799 Q ss_pred CHHHHHHHHHHHHCCCE--EEECHHHHHCCCCCHHHH Q ss_conf 99999999999987989--823279862345788999 Q gi|254781065|r 220 SEEAIAAISRLANAGII--LLSQSVLLKGINDDPEIL 254 (352) Q Consensus 220 t~~~~~A~~~L~~~Gv~--v~nQsVLLkgVND~~~~l 254 (352) .+++.+.++++.+..-. ...-..+-+......+.- T Consensus 192 ~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 228 (243) T 1nzy_A 192 REVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEEC 228 (243) T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHH T ss_conf 9999999999986899999999999998763899999 No 148 >>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA; 1.90A {Geobacillus kaustophilus HTA426} (A:42-147) Probab=24.39 E-value=46 Score=14.04 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=40.2 Q ss_pred ECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH Q ss_conf 4343563434339999999862599389993369958869999999999998798982327 Q gi|254781065|r 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS 241 (352) Q Consensus 181 ~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs 241 (352) |-+.-++.|........+.++.++-.|.++.+-.. ..+....|-+-..+.|....||- T Consensus 47 g~~~~iv~p~~~~~~k~~~l~~~Ga~Vi~v~~~~~---~~~~~~~a~~~a~~~g~~~~~qf 104 (106) T 2egu_A 47 GYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG---MRGAIAKAEELVREHGYFMPQQF 104 (106) T ss_dssp TCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGH---HHHHHHHHHHHHHHHCCBCC--- T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99759996799889999999953973697044104---66899999999750495414545 No 149 >>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418) Probab=24.33 E-value=46 Score=14.03 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=66.7 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHC---CHHHHHHHHHCCC------------------ Q ss_conf 9972698132498999999999861998128987434356343433---9999999862599------------------ Q gi|254781065|r 147 VIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRI---NPELIQCLKEAGK------------------ 205 (352) Q Consensus 147 VilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Ri---t~~L~~~l~~~~~------------------ 205 (352) +-+-|| .++.+.|..+.+--++-. .-.+||.||.=+.++.-- -+++++.|.+.+. T Consensus 64 ir~p~G---~it~~ql~~la~ia~~yg-~g~i~lTtRq~iql~gi~~~~~~~v~~~L~~~Gl~t~~~~~~~~~~~~~Gv~ 139 (211) T 1zj8_A 64 VRCDGG---ALSAAALRTLGQISTEFA-RDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTAPEPVKHPIDHVGVQ 139 (211) T ss_dssp EBCGGG---EECHHHHHHHHHHHHHHS-TTEEEECTTSCEEEEEECGGGHHHHHHHHHTTTCBCTCCCCCSSCCCCCEEE T ss_pred ECCCCC---CCCHHHHHHHHHHHHHHC-CCEEEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE T ss_conf 777886---148999999999999978-8939996780558378888899999999997599864776543555336437 Q ss_pred ----CEEEEECCCCHHHCCHHHHHHHHHHHH---CC-CE-EEECHHHHHCCCCCHHHHHHHHHHHHHCCC Q ss_conf ----389993369958869999999999998---79-89-823279862345788999999999998698 Q gi|254781065|r 206 ----PVYIAIHANHPYEFSEEAIAAISRLAN---AG-II-LLSQSVLLKGINDDPEILANLMRTFVELRI 266 (352) Q Consensus 206 ----~~~iv~H~NHp~Elt~~~~~A~~~L~~---~G-v~-v~nQsVLLkgVND~~~~l~~L~~~L~~~gV 266 (352) ..+++.=.--...+|++...++..+.+ .| +. --+|++.|.||+ .+.+.++.+.|.++|+ T Consensus 140 ~q~dg~~~vri~~p~G~lt~~ql~~la~iA~kyg~g~irlTtrQ~i~l~~i~--~~~~~~i~~~L~~~Gl 207 (211) T 1zj8_A 140 RLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIP--DALLDDLIAGLDALGL 207 (211) T ss_dssp ECTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEEC--HHHHHHHHHHHHHTTC T ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCC--HHHHHHHHHHHHHCCC T ss_conf 5268845764545884556256599999998539986997640051530463--3409999999997488 No 150 >>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:149-186,A:299-365) Probab=24.17 E-value=46 Score=14.01 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.4 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCC Q ss_conf 9999999986982423011345765210 Q gi|254781065|r 255 ANLMRTFVELRIKPYYLHHPDLAAGTSH 282 (352) Q Consensus 255 ~~L~~~L~~~gV~PYYl~~~d~v~G~~h 282 (352) ..+-..|+++||.||-=|-.|-+.|+.- T Consensus 8 savrdglLEaGv~P~NGft~dH~~GTKi 35 (105) T 1ju2_A 8 SVTKTAFLEAGVHPNHGFSLDHEEGTRI 35 (105) T ss_dssp HHHHHHHHHTTCCCEEEECCBCCSEEEE T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 0457787873126577864443478655 No 151 >>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:1-115) Probab=23.97 E-value=46 Score=13.98 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 9999999999729974799972698132498999999999861 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +..+.+++-.++.. +=++++.|||+..+. ..++++.+.+ T Consensus 66 ~~~~~i~~~~~~g~--~V~~l~~GDP~~~~~--~~~l~~~~~~ 104 (115) T 1ve2_A 66 AITARLIALAREGR--VVARLKGGDPMVFGR--GGEEALALRR 104 (115) T ss_dssp HHHHHHHHHHHTTC--EEEEEESBCTTSSTT--HHHHHHHHHH T ss_pred HHHHHHHHHHHCCC--EEEEECCCCCCCCCH--HHHHHHHHHC T ss_conf 99999999997798--676741543312242--8899999740 No 152 >>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} (A:) Probab=23.35 E-value=46 Score=14.00 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=22.6 Q ss_pred CCCCCCCCCHHHHHHHC-----CCCHHHHHHHHHHHHH Q ss_conf 33552249988998641-----9998999999999853 Q gi|254781065|r 2 QLRHKTLTSAQDLYNAN-----LIKKEQIDEIKEISNH 34 (352) Q Consensus 2 Qlr~~~i~s~~~L~~~l-----~Ls~e~~~~~~~~~~~ 34 (352) |+|. .+|.+.|++++ .|++++...+..|..+ T Consensus 14 k~Rr--css~eTLEkv~e~~~y~L~~~El~~f~~AaDH 49 (72) T 1jw2_A 14 RLRR--CQTIDTLERVIEKNKYELSDNELAVFYSAADH 49 (72) T ss_dssp HHHT--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH T ss_pred HHHH--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9981--68587899999971055998999999999999 No 153 >>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} (X:93-239) Probab=23.09 E-value=48 Score=13.87 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=14.9 Q ss_pred HHHHHHHHHH-CCCEEEEEEECCCC Q ss_conf 9999999972-99747999726981 Q gi|254781065|r 131 TEAALAYIQE-KSQIWEVIFTGGDP 154 (352) Q Consensus 131 ~~~~~~Yi~~-~~eI~eVilSGGDP 154 (352) ++..++.+++ .++=-.|++||||. T Consensus 108 i~~~i~~~~~~~~~~~~iv~TGGda 132 (147) T 2h3g_X 108 VEGIVKRMKEEAKQEPKVIATGGLA 132 (147) T ss_dssp HHHHHHHHHHHCSSCCEEEEESTTH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 9999999999878998799989877 No 154 >>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X* (A:) Probab=22.85 E-value=49 Score=13.84 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=39.3 Q ss_pred ECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHH----HCC-------HHHHHHHHHCC-CCEEEEECCCCHH Q ss_conf 26981324989999999998619981289874343563434----339-------99999986259-9389993369958 Q gi|254781065|r 150 TGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQ----RIN-------PELIQCLKEAG-KPVYIAIHANHPY 217 (352) Q Consensus 150 SGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~----Rit-------~~L~~~l~~~~-~~~~iv~H~NHp~ 217 (352) +.+|.-.-.-.+.++=++.+.++. ++..|++-.=.-+.|. .++ +++++.|++.+ +|++..-||.+|. T Consensus 47 ~~~~~a~d~y~~y~eDi~l~~~lG-~~~~R~si~WsRi~P~~~~g~~n~~~~~~Y~~~i~~l~~~Gi~pivtL~H~~~P~ 125 (469) T 2e9l_A 47 QTGDVACGSYTLWEEDLKCIKQLG-LTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQ 125 (469) T ss_dssp CCSSSTTCTTTCHHHHHHHHHHHT-CSEEEEECCHHHHSTTSSTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHC-CCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH T ss_conf 998755763461699999999839-9989804769984147877873799999999999999970986667740565157 Q ss_pred HC Q ss_conf 86 Q gi|254781065|r 218 EF 219 (352) Q Consensus 218 El 219 (352) -+ T Consensus 126 ~l 127 (469) T 2e9l_A 126 TL 127 (469) T ss_dssp HH T ss_pred HH T ss_conf 88 No 155 >>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} (A:1-266,A:460-503) Probab=22.74 E-value=29 Score=15.42 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=20.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC Q ss_conf 10118699999999999982888654106631788 Q gi|254781065|r 281 SHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPG 315 (352) Q Consensus 281 ~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~ 315 (352) =.|-=+.+.|..|.+..-.++. +.+.|+-| T Consensus 237 V~FTGS~~vG~~I~~~aa~~~k-----~~~LELGG 266 (310) T 1a4s_A 237 VSFTGSVPTGKKVMEMSAKTVK-----HVTLELGG 266 (310) T ss_dssp EEEESCHHHHHHHHHHHHTTTC-----EEEEECCC T ss_pred EEEECCHHHHHHHHHHHHHCCC-----CEEEECCC T ss_conf 9987979999999997641488-----37997787 No 156 >>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} (A:1-139,A:242-286) Probab=22.40 E-value=48 Score=13.86 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=67.8 Q ss_pred HHHCCHHHHHHH-HHHHHCCCEEEECHHHHHCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf 588699999999-999987989823279862345-788999999999998698242301134576521011869999999 Q gi|254781065|r 216 PYEFSEEAIAAI-SRLANAGIILLSQSVLLKGIN-DDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKI 293 (352) Q Consensus 216 p~Elt~~~~~A~-~~L~~~Gv~v~nQsVLLkgVN-D~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i 293 (352) ..-++++..+++ ..|.+.|+.+ +||.. .+++.+.++.+.+-....-||.-......+-..--..+-..++.. T Consensus 34 ~~~l~~~~~~~l~~~l~~~Gvvi------~Rg~~~~t~~~~~~l~~~~G~~~~~~~~~~~~~~~~v~~~s~~~~~~~l~~ 107 (184) T 1oih_A 34 SPDLDAATVEAIQAALVRHKVIF------FRGQTHLDDQSQEGFAKLLGEPVAHPTVPVVDGTRYLLQLDGAQGQRANSW 107 (184) T ss_dssp CTTCCHHHHHHHHHHHHHHSEEE------ECCCTTCCHHHHHHHHHTTSCBCC----CCCTTCSSCEEEC-----CCCSC T ss_pred CCCCCHHHHHHHHHHHHHCCEEE------ECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC T ss_conf 98699999999999999779999------869988997898999986074554344565655422310122222344544 Q ss_pred HHHH--HHHCCCCCCCEEEEECCCCCCCEEECCH--HHEEECCCEEEEECCCCC Q ss_conf 9999--9828886541066317888882355510--212313987999816998 Q gi|254781065|r 294 VASL--KEKISGLCQPFYILDLPGGYGKVKIDTH--NIKKVGNGSYCITDHHNI 343 (352) Q Consensus 294 ~~~l--~~~lsG~~~P~~v~d~p~~~GKv~i~~~--~~~~~~~~~~~l~~~~g~ 343 (352) ..++ ....|++.. -+.+..|..||-+.+.-+ |--.|+.+.+++-+-.+. T Consensus 108 H~D~sy~~~pP~~~~-l~c~~~p~~GGeT~~~D~~~~~~~w~~gd~viwdN~~~ 160 (184) T 1oih_A 108 HTDVTFVEAYPKASI-LRSVVAPASGGDTVWANENTVRWRWEAGDVAIWDNRAT 160 (184) T ss_dssp BCTTTTSSSCCSEEE-EEEEECCSSCCCEEEEEGGEEEECCCTTCEEEEETTSE T ss_pred CCCCCCCCCCCCCEE-EEEEECCCCCCCCCCCHCEEEEEEEECCCEEEECCCEE T ss_conf 357512458984115-87663267788842110739999953899899957735 No 157 >>3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} (A:124-242) Probab=22.37 E-value=50 Score=13.77 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=16.2 Q ss_pred HHHHHHHHHHC---CCEEEEEEECCCCCCCC Q ss_conf 99999999729---97479997269813249 Q gi|254781065|r 131 TEAALAYIQEK---SQIWEVIFTGGDPLILS 158 (352) Q Consensus 131 ~~~~~~Yi~~~---~eI~eVilSGGDPl~l~ 158 (352) ++..++.+++. ..--.|++||||.=.+. T Consensus 79 i~~~i~~~~~e~~~~~~~~vv~TGGda~~l~ 109 (119) T 3djc_A 79 CKELIQRIHHEAFNGDQILILATGGFASLFD 109 (119) T ss_dssp HHHHHHHHHHHTTTTCCEEEEEESTTGGGGT T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCHHHHH T ss_conf 9999999999834699868999798689886 No 158 >>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120) Probab=22.36 E-value=50 Score=13.77 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=30.7 Q ss_pred CHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 989999999999729-9747999726981324989999999998619 Q gi|254781065|r 127 SSKDTEAALAYIQEK-SQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~-~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) ....+++..+.+... .+=+=|+++.|||+..+. ..++++++.+. T Consensus 66 ~~~~~~~~~~~~~~~~~~~~V~~l~~GDP~iy~~--~~~l~~~~~~~ 110 (120) T 1wde_A 66 SRRDLEERSREIVSRALDAVVAVVTAGDPXVATT--HSSLAAEALEA 110 (120) T ss_dssp CHHHHHTSHHHHTCCSSCCEEEEEESBCTTSSSS--HHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCH--HHHHHHHHHHC T ss_conf 5355999999999997379959996689864543--99999999845 No 159 >>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein structure initiative; 2.10A {Bordetella pertussis} (A:1-15,A:92-232) Probab=22.20 E-value=50 Score=13.75 Aligned_cols=42 Identities=5% Similarity=0.007 Sum_probs=24.3 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 556789899999999997299747999726981324989999999998 Q gi|254781065|r 122 KGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTL 169 (352) Q Consensus 122 ~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L 169 (352) ..+....++..++++++++. .|+=+|+||+-+.+ .+.+..++ T Consensus 12 ~~~~~l~p~~~e~i~~lk~~-Gi~v~ivTg~~~~~-----a~~ia~~l 53 (156) T 3fvv_A 12 DHTLSLTVQAVDVVRGHLAA-GDLCALVTATNSFV-----TAPIARAF 53 (156) T ss_dssp BTTTGCCHHHHHHHHHHHHT-TCEEEEEESSCHHH-----HHHHHHHT T ss_pred CCCCHCCHHHHHHHHHHHHC-CCEEEEECCCCHHH-----HHHHHHHC T ss_conf 78821387699999999975-93699967998999-----99999981 No 160 >>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} (A:1-308,A:422-472) Probab=22.12 E-value=50 Score=13.74 Aligned_cols=109 Identities=10% Similarity=0.180 Sum_probs=80.3 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHC--- Q ss_conf 98999999999972997479997269813249899999999986199812898743435634343399999998625--- Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEA--- 203 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~--- 203 (352) ..+..+.++++++++-..-.+-++--|--.-..+.+..+.+++.++. +.+|.|.--.=...|..+ .+|++.|++. T Consensus 142 ~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-~d~I~i~Dt~G~~~P~~~-~~lv~~lk~~~~~ 219 (359) T 1rqb_A 142 DPRNXAHAXAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDXG-ADSIALXDXAALLKPQPA-YDIIKAIKDTYGQ 219 (359) T ss_dssp CTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT-CSEEEEEETTCCCCHHHH-HHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHH-HHHHHHHHHHCCC T ss_conf 99998888999995698799999616787879999999976777369-767987157653127799-9999999986575 Q ss_pred CCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHH Q ss_conf 993899933699588699999999999987989823279 Q gi|254781065|r 204 GKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSV 242 (352) Q Consensus 204 ~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsV 242 (352) +.++.+.+|-|-=. +....-.-.++|+....=|+ T Consensus 220 ~i~i~~H~Hnt~Gl-----a~an~laAi~AGad~IDtai 253 (359) T 1rqb_A 220 KTQINLHCHSTTGV-----TEVSLXKAIEAGVDVVDTAI 253 (359) T ss_dssp TCCEEEEEBCTTSC-----HHHHHHHHHHTTCSEEEEBC T ss_pred CCCCEEEECCHHHH-----HHHHHHHHHHCCCCEEECCC T ss_conf 43312312460647-----99999999985988983445 No 161 >>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} (A:1-152,A:298-330) Probab=21.91 E-value=51 Score=13.71 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=60.7 Q ss_pred CCHHHHHHHHH-HHHCCCEEEECHHHHHCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCCCCCCCHHHHH Q ss_conf 69999999999-9987989823279862345-78899999999999869824230113457-----65210118699999 Q gi|254781065|r 219 FSEEAIAAISR-LANAGIILLSQSVLLKGIN-DDPEILANLMRTFVELRIKPYYLHHPDLA-----AGTSHFRLTIEEGQ 291 (352) Q Consensus 219 lt~~~~~A~~~-L~~~Gv~v~nQsVLLkgVN-D~~~~l~~L~~~L~~~gV~PYYl~~~d~v-----~G~~hf~v~~~~~~ 291 (352) ++++..++++. |.+.|+.+ +||.+ ++++.+.++.+.+-.....||+-...+.. ...........-+| T Consensus 46 ~~~~~~~~L~~~L~~~Gvvv------fRgq~~~t~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 119 (185) T 2q4a_A 46 TIKTQKHYLDSLLHESGAVL------FRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPF 119 (185) T ss_dssp HHHHTHHHHHHHHHHHSEEE------ECSSCCCSHHHHHHHHHHTCCCBCCCCSCSSCCEEEETTEEECCCSCTTSCEEE T ss_pred HHHHHHHHHHHHHHHCCEEE------ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 78999999999999779999------899999899999999997287667866777776666675414788986555213 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCHHHEEEC-CCEEEEECC Q ss_conf 9999999828886541066317888882355510212313-987999816 Q gi|254781065|r 292 KIVASLKEKISGLCQPFYILDLPGGYGKVKIDTHNIKKVG-NGSYCITDH 340 (352) Q Consensus 292 ~i~~~l~~~lsG~~~P~~v~d~p~~~GKv~i~~~~~~~~~-~~~~~l~~~ 340 (352) +.=..-...-+++.. -|.+..|..+|-+.+ +-.|. ++..++-|+ T Consensus 120 HtD~sy~~~pp~~~~-L~c~~~p~~GGeT~f----~D~~~~~~~~~~~~~ 164 (185) T 2q4a_A 120 HHEMAQVREFPSKLF-FYCEIEPKCGGETPI----VLSWQRGDVLLIDNW 164 (185) T ss_dssp ECTTTTSTTCCSEEE-EEEEECCSEECCCCE----EEHCCTTCEEEEETT T ss_pred EEECCCCCCCCHHHE-EEEECCCCCCCCCEE----EEHCCCCCEEEECCH T ss_conf 556567668972431-333102556677657----779389998999150 No 162 >>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* (A:1-254,A:443-479) Probab=21.88 E-value=32 Score=15.14 Aligned_cols=165 Identities=14% Similarity=0.110 Sum_probs=76.9 Q ss_pred HHHHHHHHHHHHCCC--EEEEEEECCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCEEEEEHHHCCHHHHHHHHH Q ss_conf 999999999972997--4799972698132498999999999861----9981289874343563434339999999862 Q gi|254781065|r 129 KDTEAALAYIQEKSQ--IWEVIFTGGDPLILSHKRLQKVLKTLRY----IKHVQILRFHSRVPIVDPQRINPELIQCLKE 202 (352) Q Consensus 129 ~~~~~~~~Yi~~~~e--I~eVilSGGDPl~l~~~~L~~ll~~L~~----i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~ 202 (352) +-+.++.++|++|.+ ..-+-.+||-|+..........++.++- ...+..-......+...-.-. -.- T Consensus 70 ~iL~~~a~~l~~~~~ela~l~~~e~gk~~~~a~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~P 142 (291) T 2imp_A 70 SWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLF-------KRA 142 (291) T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTTTTCCCEEECCSSTTEEEEEE-------EEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-------CCC T ss_conf 9999999999982999999999961984224410001112223321001232046542468864433331-------104 Q ss_pred CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCCCCC-- Q ss_conf 5993899933699588699999999999987989823279862345788999999999998698242301--134576-- Q gi|254781065|r 203 AGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLH--HPDLAA-- 278 (352) Q Consensus 203 ~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~--~~d~v~-- 278 (352) .+ .+.++.-||.|-.+.-. . +..-..+|.+ |++|-=.+.+-+...|.+-+.+.|.-+-=+- .++... T Consensus 143 ~G-VV~~I~p~N~P~~~~~~--~-~~~ALaaGN~-----VIvKps~~~pl~~~~l~~ll~~Ag~p~gv~~~v~~~~~~~~ 213 (291) T 2imp_A 143 LG-VTTGILPWNFPFFLIAR--K-MAPALLTGNT-----IVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVG 213 (291) T ss_dssp CS-EEEEECCSSSHHHHHHH--H-HHHHHHTTCE-----EEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHH T ss_pred CC-CEEEECCCHHHHHHHHH--H-HHHHHHHCCE-----EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH T ss_conf 68-34887131125777776--7-9999970891-----79657632719999999999985839680899867928999 Q ss_pred ---------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf ---------521011869999999999998288865410663178 Q gi|254781065|r 279 ---------GTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLP 314 (352) Q Consensus 279 ---------G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p 314 (352) ..-.|-=+.+.|..|++..-.++. +.+.|+. T Consensus 214 ~~L~~~p~i~~V~FTGS~~vG~~i~~~aa~~lk-----~~~lELG 253 (291) T 2imp_A 214 QELAGNPKVAMVSMTGSVSAGEKIMATAAKNIT-----KVXLELG 253 (291) T ss_dssp HHHHHCTTEEEEEEESCHHHHHHHHHHHHTTTC-----EEEEECC T ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCC-----CEEEECC T ss_conf 999839896779986977999999998655677-----2799768 No 163 >>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} (A:121-235) Probab=21.61 E-value=41 Score=14.33 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=17.3 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCH Q ss_conf 99999999729974799972698132498 Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIFTGGDPLILSH 159 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~ 159 (352) ++..++.+++.-.--.|++||||.-.+.+ T Consensus 78 i~~~i~~~~~~~~~~~vilTGGda~~l~~ 106 (115) T 3bex_A 78 LEGIIGRIKEVYGDLPVVLTGGQSKIVKD 106 (115) T ss_dssp HHHHHHHHHHHHCCCCEEEESTTSGGGGG T ss_pred HHHHHHHHHHHCCCCCEEEECCCHHHHHH T ss_conf 99999999998399809996898899986 No 164 >>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* (A:1-261,A:450-487) Probab=21.32 E-value=52 Score=13.63 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=12.9 Q ss_pred CCCCCHHHHHHHHHHHHHHC Q ss_conf 01186999999999999828 Q gi|254781065|r 282 HFRLTIEEGQKIVASLKEKI 301 (352) Q Consensus 282 hf~v~~~~~~~i~~~l~~~l 301 (352) .|-=+.+.|.+|++..-.++ T Consensus 233 ~FTGS~~~G~~I~~~aa~~~ 252 (299) T 2w8n_A 233 SFTGSTTTGKILLHHAANSV 252 (299) T ss_dssp EEEECHHHHHHHHHHHHTTT T ss_pred EEECCHHHHHHHHHHHHHCC T ss_conf 99698589999999987439 No 165 >>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} (A:) Probab=21.19 E-value=52 Score=13.61 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=10.9 Q ss_pred HHHHHHHHHCCCCCEEEEEECCE Q ss_conf 99999998619981289874343 Q gi|254781065|r 162 LQKVLKTLRYIKHVQILRFHSRV 184 (352) Q Consensus 162 L~~ll~~L~~i~hv~~IRi~TR~ 184 (352) -.++.+-|++-+||..-=+.+|+ T Consensus 98 A~~ia~FL~~~~~v~L~If~aRL 120 (190) T 2nyt_A 98 ADRIIKTLSKTKNLRLLILVGRL 120 (190) T ss_dssp HHHHHHHHHHCTTEEEEEEEEEC T ss_pred HHHHHHHHHHCCCEEEEEEEECC T ss_conf 99999999779990899882115 No 166 >>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* (A:148-237,A:286-402) Probab=21.11 E-value=53 Score=13.60 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) -.+++.+++-...+|+|+=+||||| T Consensus 49 ~~~l~~~~~~~~~d~~v~~~~~~g~ 73 (207) T 2np9_A 49 VDDMETAVDLALLDPGVRVGLLRGG 73 (207) T ss_dssp HHHHHHHHHHHHHCTTCSEEEEEEC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999999962999639999688 No 167 >>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A {Thermomonospora fusca} (A:) Probab=20.99 E-value=52 Score=13.65 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-------HHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCC--HHHHHH Q ss_conf 9999999999729974799972698132498-------9999999998619981289874343563434339--999999 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSH-------KRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRIN--PELIQC 199 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~-------~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit--~~L~~~ 199 (352) +.+.+.++-.++||+|-=.-+ +-+|-.-.. +-+..+...++++..-..+.++.-.......... +..... T Consensus 105 ~~~~~~~~~~~~hpsv~~~~~-~NE~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (302) T 1bqc_A 105 DYWIELKSVLQGEEDYVLINI-GNEPYGNDSATVAAWATDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTMRNNADQVY 183 (302) T ss_dssp HHHHHTHHHHTTCTTTEEEEC-SSSCCCSCHHHHTTHHHHHHHHHHHHHHTTCCSCEEEECTTTTTCTTCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHCCCCHHCCC T ss_conf 999999998528997699960-1012789984077899999999999997299868998787645563010013101024 Q ss_pred HHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE--EEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 8625993899933699588699999999999987989--823279862345788999999999 Q gi|254781065|r 200 LKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGII--LLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 200 l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~--v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) -.......+...|.-...............+...|.+ +.....-....+...+........ T Consensus 184 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~ 246 (302) T 1bqc_A 184 ASDPTGNTVFSIHMYGVYSQASTITSYLEHFVNAGLPLIIGEFGHDHSDGNPDEDTIMAEAER 246 (302) T ss_dssp HTCTTCCEEEEEEESGGGCSHHHHHHHHHHHHHHTCCEEEEEECCTTSTTCCCHHHHHHHHHH T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 678541658995157785577899999997876698299968776578987899999999998 No 168 >>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} (A:44-145) Probab=20.77 E-value=53 Score=13.55 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=51.7 Q ss_pred HHHHHHHHCCCEE-EEE-EECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEE Q ss_conf 9999997299747-999-72698132498999999999861998128987434356343433999999986259938999 Q gi|254781065|r 133 AALAYIQEKSQIW-EVI-FTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIA 210 (352) Q Consensus 133 ~~~~Yi~~~~eI~-eVi-lSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv 210 (352) .++.+..+.-.++ .|+ -|+| +...=-.+..+...+ +.-+++|.....+..+.++.++-.+..+ T Consensus 10 ~~~~~~~~~g~~~~~vv~aSsG-----N~g~alA~~a~~~G~----------~~~iv~p~~~~~~k~~~l~~~Ga~v~~~ 74 (102) T 1o58_A 10 FMILDAEKRGLLKNGIVEPTSG-----NMGIAIAMIGAKRGH----------RVILTMPETMSVERRKVLKMLGAELVLT 74 (102) T ss_dssp HHHHHHHHTTCCTTCEEEECSS-----HHHHHHHHHHHHHTC----------CEEEEEETTSCHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHCCCCCCCEEECCCC-----CHHHHHHHHHHHCCC----------CEECCCCCCCHHHHHHHHHCCCCEEEEE T ss_conf 9999999759998857967897-----167888889987595----------2323787656299998776169889990 Q ss_pred ECCCCHHHCCHHHHHHHHHHHHCCCEEEEC Q ss_conf 336995886999999999999879898232 Q gi|254781065|r 211 IHANHPYEFSEEAIAAISRLANAGIILLSQ 240 (352) Q Consensus 211 ~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ 240 (352) .. .....+....|.+-..+.|....|| T Consensus 75 ~~---~~~~~~~~~~a~~~a~~~g~~~~~q 101 (102) T 1o58_A 75 PG---ELGMKGAVEKALEISRETGAHMLNQ 101 (102) T ss_dssp CG---GGHHHHHHHHHHHHHHHHCCBCCCT T ss_pred CC---CCHHHHHHHHHHHHHHHCCCEEECC T ss_conf 68---7403799999999997559588157 No 169 >>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} (A:273-354,A:409-562) Probab=20.71 E-value=24 Score=15.99 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEE---ECC--CCCCCEE Q ss_conf 999999999998288865410663---178--8888235 Q gi|254781065|r 288 EEGQKIVASLKEKISGLCQPFYIL---DLP--GGYGKVK 321 (352) Q Consensus 288 ~~~~~i~~~l~~~lsG~~~P~~v~---d~p--~~~GKv~ 321 (352) +-..+|.+.++.+|+.|.+|++++ ++| ...||+- T Consensus 169 ~~~~~l~~~l~~~Lp~y~vP~~~~~v~~lPl~t~sGKid 207 (236) T 3ite_A 169 EINNSLRQACEQTLPAYXVPDFIIPISFIPLRDTSAKTD 207 (236) T ss_dssp --------------------------------------- T ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCC T ss_conf 129999999984587667873999958877999984723 No 170 >>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} (A:) Probab=20.70 E-value=54 Score=13.54 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=22.9 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 989999999999729974799972698132 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLI 156 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~ 156 (352) .+++..++++++++. .|+=+++||=.|++ T Consensus 130 ~r~~a~~~I~~l~~~-GI~v~miTGD~~~T 158 (165) T 2arf_A 130 ISSDVSDAMTDHEMK-GQTAILVAIDGVLC 158 (165) T ss_dssp SCHHHHHHHHHHHTT-TSEEEEEEETTEEE T ss_pred CCHHHHHHHHHHHHC-CCEEEEEEECCEEE T ss_conf 898999999999977-99199999999999 No 171 >>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} (A:) Probab=20.56 E-value=54 Score=13.52 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=42.9 Q ss_pred HHHHHHHHCCCCEEEEECC------CCHHHCCHHHHHHHHHHHHCC-CEEEECH-HHHHCCCCCHHHHHHHHHHHHHCC Q ss_conf 9999986259938999336------995886999999999999879-8982327-986234578899999999999869 Q gi|254781065|r 195 ELIQCLKEAGKPVYIAIHA------NHPYEFSEEAIAAISRLANAG-IILLSQS-VLLKGINDDPEILANLMRTFVELR 265 (352) Q Consensus 195 ~L~~~l~~~~~~~~iv~H~------NHp~Elt~~~~~A~~~L~~~G-v~v~nQs-VLLkgVND~~~~l~~L~~~L~~~g 265 (352) .+.++++-+..| ++.+|. +||+-+|++.. ++|.+.| +.-.|.. -+|..-.+...++..+...+..+. T Consensus 218 t~~dvl~~s~~P-vi~SHs~~ral~~h~RNl~De~i---r~ia~~GGvIgi~~~~~fl~~~~~~~~t~~~~~~hi~~~~ 292 (417) T 3b40_A 218 ALEQVAALSRAP-IVASHSAPRALVDIKRNLSDHEM---QLIKDSGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDLP 292 (417) T ss_dssp HHHHHHHHCSSC-EEEEEECBTTTSCCTTSBCHHHH---HHHHHTTCEEEEECCHHHHSCCCHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHCCCCC-EEECCCCHHHHCCCCCCCCHHHH---HHHHHCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHCCC T ss_conf 999987504666-32214045652774346789999---9999749889995346752677644234688888763013 No 172 >>1jfw_A TAT protein; HIV-1, heteronuclear, drug design, viral protein; NMR {Synthetic} (A:) Probab=20.50 E-value=29 Score=15.47 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=9.8 Q ss_pred CCCCCHHHCCC Q ss_conf 74300000112 Q gi|254781065|r 103 HVCPVYCRFCF 113 (352) Q Consensus 103 ~~C~~~CryCf 113 (352) ..|..||..|| T Consensus 28 K~Cc~HCqlCF 38 (86) T 1jfw_A 28 KKCCFHCQVCF 38 (86) T ss_dssp TTBTSSSSCCS T ss_pred HHHHHHHHHHH T ss_conf 00678889988 No 173 >>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} (A:) Probab=20.34 E-value=54 Score=13.49 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=7.1 Q ss_pred HHHHHHCCCEEEEEEECCC Q ss_conf 9999729974799972698 Q gi|254781065|r 135 LAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 135 ~~Yi~~~~eI~eVilSGGD 153 (352) ++-|++.|+=-||||||-+ T Consensus 144 ~~~L~~rp~~~evIlTGr~ 162 (196) T 1g5t_A 144 ISALNARPGHQTVIITGRG 162 (196) T ss_dssp HHHHHTSCTTCEEEEECSS T ss_pred HHHHHHCCCCCEEEEECCC T ss_conf 9999858999779997999 No 174 >>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein structure initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} (A:80-377) Probab=20.13 E-value=48 Score=13.87 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=47.2 Q ss_pred HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCE----------------EEEEHHHCCHHHHH Q ss_conf 99997299747999726981324989999999998619981289874343----------------56343433999999 Q gi|254781065|r 135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRV----------------PIVDPQRINPELIQ 198 (352) Q Consensus 135 ~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~----------------pv~~P~Rit~~L~~ 198 (352) ........-+. ...+.++....+++.+..++....+-. ..+.+|... .+..-.-++++.++ T Consensus 132 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~ 208 (298) T 2puz_A 132 LEKAHAEGLAD-AVDGFCEGIAFSVKEIDRVFAAAQQRG--LPVKLHAEQLSNLGGAELAASYNALSADHLEYLDETGAK 208 (298) T ss_dssp HHHHHHTTCCS-EECCEESTTSBCHHHHHHHHHHHHHTT--CCBEEEESSSSCCSHHHHHHHTTCSEEEECTTCCHHHHH T ss_pred HHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHCCCCEEHHCCCCHHHHHH T ss_conf 76654433322-103442122343567789999998659--972001133220013566766085300000121044555 Q ss_pred HHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC Q ss_conf 986259938999336995886999999999999879898232 Q gi|254781065|r 199 CLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 (352) Q Consensus 199 ~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ 240 (352) .+++.+ +.++...-+..+.-......++.+.++|+++.-- T Consensus 209 ~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~l~~aGv~i~~g 248 (298) T 2puz_A 209 ALAKAG--TVAVLLPGAFYALREKQLPPVQALRDAGAEIALA 248 (298) T ss_dssp HHHHHT--CEEEECHHHHHHHTCCCCCCHHHHHHHTCCEEEC T ss_pred HHHHCC--CCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCC T ss_conf 543101--2210134420111012456166777630330000 No 175 >>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} (A:1-130) Probab=20.00 E-value=55 Score=13.44 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC Q ss_conf 899999999997299747999726981324989999999998619 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI 172 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i 172 (352) .+..+.+++..++...| ++++-|||+..+. ..+++..+.+- T Consensus 80 ~~~~~~i~~~~~~g~~V--~~l~~GDP~~~~~--~~~l~~~~~~~ 120 (130) T 1cbf_A 80 EEMVGTMLDRMREGKMV--VRVHTGDPAMYGA--IMEQMVLLKRE 120 (130) T ss_dssp HHHHHHHHHHHTTTCCE--EEEESBCTTTTCC--CHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCEE--EEECCCCCCCCCC--HHHHHHHHHHC T ss_conf 88899999999809846--7635886422260--67789999732 Done!