RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase
protein [Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur
cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine,
alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium
subterminale} (A:95-342)
Length = 248
Score = 119 bits (297), Expect = 8e-28
Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 2/248 (0%)
Query: 75 EDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAA 134
EDP+ ++ SP+ G+ HRYPDR+LL + C YCR C RR G + + A
Sbjct: 1 EDPLHEDTDSPVPGLTHRYPDRVLLLITDXCSXYCRHCTRRRFAGQSDD-SXPXERIDKA 59
Query: 135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINP 194
+ YI+ Q+ +V+ +GGD L++S + L+ ++ LR I HV+I+R SR P+V PQRI P
Sbjct: 60 IDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITP 119
Query: 195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEIL 254
EL+ LK+ PV++ H NHP E +EE+ A LA+AG+ L +QSVLL+G+ND +
Sbjct: 120 ELVNXLKKY-HPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVX 178
Query: 255 ANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLP 314
L+ V++R++PYY++ DL+ G HFR + +G +I+ L+ SG C P +++D P
Sbjct: 179 KELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAP 238
Query: 315 GGYGKVKI 322
GG GK +
Sbjct: 239 GGGGKTPV 246
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM
barrel, ligand binding protein; HET: SAM; 2.20A
{Staphylococcus aureus} (A:1-313)
Length = 313
Score = 74.6 bits (181), Expect = 2e-14
Identities = 28/272 (10%), Positives = 84/272 (30%), Gaps = 14/272 (5%)
Query: 83 HSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSK--DTEAALAYIQE 140
+K + R + L + C C +C +E+ G + ++ + +
Sbjct: 2 VEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKV 61
Query: 141 --KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQ 198
+ + ++ TGG+PL+ + L ++ L I ++ + + ++
Sbjct: 62 YAELGVKKIRITGGEPLM--RRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKH-GQKLYDA 118
Query: 199 CLKEAGKPVYIAIHANH-----PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEI 253
L+ + + + I + G+ + V+ KG + +
Sbjct: 119 GLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG--INDDQ 176
Query: 254 LANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDL 313
+ ++ F + I+ ++ D+ + +++ +++
Sbjct: 177 IIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGE 236
Query: 314 PGGYGKVKIDTHNIKKVGNGSYCITDHHNIVH 345
Y + K + + + S
Sbjct: 237 VAKYYRHKDNGVQFGLITSVSQSFCSTCTRAR 268
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical,
SAM radical, activase, glycyl radical, 4Fe- 4S,
carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A
{Escherichia coli} PDB: 3cb8_A* (A:)
Length = 245
Score = 54.4 bits (129), Expect = 2e-08
Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 5/229 (2%)
Query: 77 PIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEA--A 134
+ HS P + C + C +C R+ + G ++ +D
Sbjct: 1 SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVV 60
Query: 135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINP 194
+ V +GG+ + L + ++ + + L + V DP
Sbjct: 61 TYRHFMNASGGGVTASGGEAI-LQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDEL 119
Query: 195 ELIQC-LKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEI 253
+ + K + IH N + + LAN + + + V++ G +DD +
Sbjct: 120 LEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDS 179
Query: 254 LANLMRTFVEL-RIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKI 301
L ++ ++ L + E V K++
Sbjct: 180 AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKET 228
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme,
metal binding protein, structural genomics, NPPSFA;
2.21A {Pyrococcus horikoshii} (A:)
Length = 342
Score = 44.0 bits (102), Expect = 3e-05
Identities = 29/260 (11%), Positives = 72/260 (27%), Gaps = 29/260 (11%)
Query: 73 EREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTE 132
++ G + +H + + +L C C FC+R D
Sbjct: 49 KKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPA 108
Query: 133 AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLK---------------TLRYIKHVQI 177
+ + + + + G + ++
Sbjct: 109 FIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHK 168
Query: 178 LRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHP-----------YEFSEEAIAA 226
F + + E + + +Y++I A + E +
Sbjct: 169 RGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRF 228
Query: 227 ISRLANAGIILLSQSVLLKGIND-DPEILANLMRT--FVELRIKPYYLHHPDLAAGTSHF 283
+ + + + + L+KG N PE A L+ + + K Y T +
Sbjct: 229 LELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINN 288
Query: 284 RLTIEEGQKIVASLKEKISG 303
+ ++ ++ +L + + G
Sbjct: 289 MPSHQDIREFAEALVKHLPG 308
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES
cluster, transferase; HET: SAM DTB; 3.40A {Escherichia
coli} (A:)
Length = 369
Score = 42.1 bits (97), Expect = 1e-04
Identities = 28/254 (11%), Positives = 63/254 (24%), Gaps = 23/254 (9%)
Query: 33 NHYSIALTPVIANLINPHNPNDPIARQFIPQKEELNILPEEREDPIGDNNHSPLKGIVHR 92
+H+ + + EL P H
Sbjct: 7 HHHDYDIPTTENLYFQGSAHRPRWTLSQV---TELFEKPLLDLLFEAQQVHRQHFDPRQV 63
Query: 93 YPDRILLKLLHVCPVYCRFCFRREMVGSQ--KGTVLSSKDTEAALAYIQEKSQIWEVIFT 150
+L CP C++C + + ++ + + + +
Sbjct: 64 QVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGA 123
Query: 151 GGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYI- 209
+ VQ ++ + ++ Q L AG Y
Sbjct: 124 AWKNPHERDMP--------YLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNH 175
Query: 210 -------AIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFV 262
+E + + ++ +AGI + S ++ G+ + + A L+
Sbjct: 176 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIV--GLGETVKDRAGLLLQLA 233
Query: 263 ELRIKPYYLHHPDL 276
L P + L
Sbjct: 234 NLPTPPESVPINML 247
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme
biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S
cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364)
Length = 364
Score = 41.4 bits (95), Expect = 2e-04
Identities = 34/246 (13%), Positives = 72/246 (29%), Gaps = 17/246 (6%)
Query: 62 PQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFC----FRREM 117
P+ E ED + R L + C C FC
Sbjct: 21 PRYTSYPTALEFSEDFGEQAFLQAVARYPERP--LSLYVHIPFCHKLCYFCGCNKIVTRQ 78
Query: 118 VGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI 177
+ + + A + + ++ + GG P L+ ++ +++K LR ++ Q
Sbjct: 79 QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLR--ENFQF 136
Query: 178 LRFHSRVPIVDPQRINPELIQCLKEAGKPVYI---------AIHANHPYEFSEEAIAAIS 228
VDP+ I +++ L+ G + + E A ++
Sbjct: 137 NADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLN 196
Query: 229 RLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIE 288
G + ++ PE A ++ EL + + + I+
Sbjct: 197 HAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIK 256
Query: 289 EGQKIV 294
+
Sbjct: 257 DADLPS 262
>3can_A Pyruvate-formate lyase-activating enzyme; structural
genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides
vulgatus atcc 8482} (A:)
Length = 182
Score = 38.3 bits (88), Expect = 0.002
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 144 IWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEA 203
V F GG+PL+ + ++ L+ I + E + +
Sbjct: 4 GGGVTFCGGEPLL----HPEFLIDILKRCGQQGI-----HRAVDTTLLARKETVDEVXRN 54
Query: 204 GKPVYIAIHANHPYEFS-------EEAIAAISRLANAGIILLSQSVLLKGINDDPEILAN 256
+ + I + + E + I R+A A + L++G+N D + +
Sbjct: 55 CELLLIDLKSXDSTVHQTFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKL 114
Query: 257 LMRTFVELRIKPYYLHH 273
L P ++
Sbjct: 115 SAEFLASLPRHPEIINL 131
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A
{Methanocaldococcus jannaschii} (A:)
Length = 311
Score = 35.4 bits (80), Expect = 0.012
Identities = 30/284 (10%), Positives = 62/284 (21%), Gaps = 50/284 (17%)
Query: 55 PIARQFIPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFR 114
Q ++ N + + + + C C FC+R
Sbjct: 12 KQRYQIDGHTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWR 71
Query: 115 REMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKH 174
++ + E L + + + L +
Sbjct: 72 VLPRDIGIDISQ------------IKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGE 119
Query: 175 VQILRFHSRVPIV----DPQRINPELIQCLKEAGK-PVYIAIHAN--------------- 214
+ + + P L + +K K + +N
Sbjct: 120 KKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQL 179
Query: 215 ----------------HPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLM 258
+ E+I + ++ L++G NDD L
Sbjct: 180 YISLDAYDLDSYRRICGGKKEYWESILNTLDILKEKKRTCIRTTLIRGYNDDILKFVELY 239
Query: 259 RT--FVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300
+ +K Y L +E K+ L E
Sbjct: 240 ERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDEN 283
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; HET: CXS; 2.00A
{Thermotoga maritima MSB8} (A:1-112)
Length = 112
Score = 33.1 bits (75), Expect = 0.050
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 16/105 (15%)
Query: 105 CPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQE--KSQIWEVIFTGGDPLILSH--- 159
C C FC GS + S+ E +++ K E+I D
Sbjct: 14 CDRGCTFCSIPSFKGSLR-----SRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLY 68
Query: 160 --KRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202
+ L +L+ L + +R + P + E+I E
Sbjct: 69 RKQALPDLLRRLNSLNGEFWIRVXY----LHPDHLTEEIISAXLE 109
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical,
adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase,
maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A
{Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:)
Length = 348
Score = 31.3 bits (69), Expect = 0.20
Identities = 19/223 (8%), Positives = 57/223 (25%), Gaps = 9/223 (4%)
Query: 67 LNILPEEREDPIGDNNHSPLKGIVHR-YPDRILLKLLHVCPVYCRFCFRREMVGSQKGTV 125
L+I + + + V R +++ +VC C +C R + K
Sbjct: 24 LSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYR 83
Query: 126 LSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP 185
++ ++ + ++ G+ + ++K ++ + L
Sbjct: 84 MTPEEIVERARLAVQF-GAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPR 142
Query: 186 --IVDPQRINPELIQCLKEAGKP-VYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSV 242
+ + E P ++ + + +E +
Sbjct: 143 EYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNXL----LTLKELGYETGAGS 198
Query: 243 LLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL 285
++ + L + + E + T
Sbjct: 199 MVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANE 241
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB,
inhibitor, TIM barrel, sialic acid synthase,
transferase; HET: WQP; 1.75A {Neisseria meningitidis}
PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:1-276)
Length = 276
Score = 31.4 bits (71), Expect = 0.20
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIND-DP 251
N LI+ + GKP+ ++ N ++++ I +L ++ D
Sbjct: 137 NYPLIKLVASFGKPIILSTGXNSIESI-KKSVEIIREAGVPYALLHCTNIYPTPYEDVRL 195
Query: 252 EILANLMRTF 261
+L F
Sbjct: 196 GGXNDLSEAF 205
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 31.0 bits (70), Expect = 0.22
Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 39/131 (29%)
Query: 69 ILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSS 128
IL RE SP + +Y R + R +
Sbjct: 6 ILTTAREHHSSVKYASPNLNM--KYRKR-------------QLVTREAQI---------K 41
Query: 129 KDTEAALAYIQ-EKSQIWEVIFTGGDPLILSHKRLQKVLK-TLRYIKHVQIL---RFHSR 183
E L ++ E +I D +R +++ ++ Q F+ R
Sbjct: 42 DWVENELEALKLEAEEI-----PSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKR 96
Query: 184 VPIVDPQRINP 194
DP RI P
Sbjct: 97 ----DP-RIAP 102
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase;
oxidoreductase, cholesterol, biocynthesis, HMG-COA,
NADPH, statin, alternative splicing; HET: RIE; 1.70A
{Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A*
3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A*
3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A*
1hwj_A* 1hwk_A* ... (A:154-258)
Length = 105
Score = 30.9 bits (70), Expect = 0.27
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 100 KLLHVCP------VYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGG 152
+L + +Y RF R G G + SK TE AL+ + E +++ G
Sbjct: 43 RLQKLHTSIAGRNLYIRFQSR---SGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSG 98
>3hcy_A Putative two-component sensor histidine kinase protein;
structural genomics, PSI, MCSG, protein structure
initiative; 2.80A {Sinorhizobium meliloti 1021} (A:)
Length = 151
Score = 30.4 bits (68), Expect = 0.32
Identities = 13/121 (10%), Positives = 33/121 (27%), Gaps = 8/121 (6%)
Query: 133 AALAYIQEKSQIWEVIFTGGDP----LILSHKRLQKVLKTLR--YIKHVQIL-RFHSRVP 185
A++ E + V G + H ++++V
Sbjct: 24 ASILLFDEAGTMRFVAARGLSEHYQRAVDGHSPWITGANEPEPIFVENVDDAEFSRELKE 83
Query: 186 IVDPQRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLL 244
+ + I L G+ + + + P+ F++ I +A + +
Sbjct: 84 SIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAE 143
Query: 245 K 245
Sbjct: 144 Y 144
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; 2.12A {Shewanella
oneidensis} (A:1-295)
Length = 295
Score = 30.0 bits (66), Expect = 0.47
Identities = 6/50 (12%), Positives = 9/50 (18%), Gaps = 2/50 (4%)
Query: 185 PIVDPQRINPELIQCLKEAGKPVYIAIH--ANHPYEFSEEAIAAISRLAN 232
D + + L G + H I L
Sbjct: 215 YHKDLNLAFADKLTKLAPKGLGFXAKYYPEETHQSVSHIGLYDGIRHLFK 264
>3e0y_A Conserved domain protein; APC87688.2, geobacter
sulfurreducens PCA, structural genomics, PSI-2, midwest
center for structural genomics; 3.10A {Geobacter
sulfurreducens} (A:)
Length = 181
Score = 29.7 bits (66), Expect = 0.54
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 145 WEVIFTGGDPLILSHKRLQKVLKTLR--YIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202
++ F G + + V + + + + P + ++ N L + +
Sbjct: 68 FDPAFIGKIRIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSXLSFPIGD 127
Query: 203 AGKPV-YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILA 255
+ I ++ F E+ I +S +AN + + + E A
Sbjct: 128 KKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKLRQQVASSRKAAEASA 181
>1vli_A Spore coat polysaccharide biosynthesis protein SPSE;
2636322, structural genomics, JCSG, protein structure
initiative, BSU37870, PSI; 2.38A {Bacillus subtilis}
(A:1-300)
Length = 300
Score = 29.5 bits (66), Expect = 0.75
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL 237
+ L++ + +P + + EA I N I +
Sbjct: 147 HLPLLKYVARLNRPXIFSTAGAEISDV-HEAWRTIRAEGNNQIAI 190
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.75A {Oleispira
antarctica} (A:)
Length = 280
Score = 29.1 bits (63), Expect = 0.96
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 185 PIVDPQRINPELIQCLKEAGKPVYIAIH--ANHPYEFSEEAIAAISR 229
+ Q L P+ + H +H Y F I R
Sbjct: 226 NFLAEQLKPEVLEAAASSNNYPLELRSHEGYDHSYYFIASFIEDHLR 272
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase;
manno-octulosonate, synthase, lipopolysaccharide, KDOP,
KDO8 kdops; 1.75A {Neisseria meningitidis serogroup B}
PDB: 3fyo_A* 3fyp_A* 1phw_A* 1g7v_A* 1gg0_A 1phq_A*
1d9e_A* 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* (A:)
Length = 280
Score = 28.2 bits (62), Expect = 1.7
Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 12/133 (9%)
Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPE 252
+L+ + + G V + + + + AG L + +G + +
Sbjct: 118 QTDLVVAMAKTGNVV---NIKKPQFLSPSQMKNIVEKFHEAGNGKL--ILCERGSSFGYD 172
Query: 253 ILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILD 312
L M F + K + P + T + +
Sbjct: 173 NLVVDMLGFGVM--KQTCGNLPVIFDVTHSLQTRDAGSAASGG-----RRAQALDLALAG 225
Query: 313 LPGGYGKVKIDTH 325
+ + +++H
Sbjct: 226 MATRLAGLFLESH 238
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase;
PEP-phosphotransferase, GAF domain, structural genomics,
PSI-2, protein structure initiative; HET: MSE P4G; 1.55A
{Acinetobacter SP} (A:)
Length = 171
Score = 27.8 bits (61), Expect = 2.2
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 133 AALAYIQEKSQIWEVIFTGGDP--------LILSHKRLQKVLKTLR--YIKHVQILRFHS 182
++ + E++Q + + + G L LS + V + +++ +
Sbjct: 45 CSIYLLDERNQRYLLXASKGLNPESVGHVSLQLSEGLVGLVGQREEIVNLENASKHERFA 104
Query: 183 RVPIVDPQRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAISRLAN-AGIIL 237
+P + N L + K + + P +FSE A + + L ++
Sbjct: 105 YLPETGEEIYNSFLGVPVXYRRKVXGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVI 161
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens}
(A:1-50,A:81-218)
Length = 188
Score = 27.5 bits (60), Expect = 2.6
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAIS 228
+ + L H + V + + LK G V + H E + I I
Sbjct: 123 ASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMGH--EVLPQEIHDIG 180
Query: 229 R 229
Sbjct: 181 A 181
>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold
family, catalytic triad, kinetics, proposed reaction
mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens}
(A:)
Length = 278
Score = 27.1 bits (58), Expect = 3.6
Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 185 PIVDPQRINPELIQCLKEAGKPVYIAIH--ANHPYEFSEEAIAAISR 229
++ + +K + + H +H Y F +
Sbjct: 225 SFLEKGLRPWLFEEAIKGTDIGLTLRXHDRYDHSYYFISTFXDDHLK 271
>2p97_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413}
(A:1-101)
Length = 101
Score = 27.1 bits (60), Expect = 4.0
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 186 IVDPQRINPELIQCLKEAGKPVYIAI-HANH 215
++DP ++ + L+ G V+I + +++H
Sbjct: 37 LIDPVALSNHDWKHLESLGGVVWIVLTNSDH 67
>1ihm_A Capsid protein; beta-barrel, EF-TU-like domain
caliciviridae, T=3 icosahedral capsid, icosahedral
virus; 3.40A {Norwalk virus} (A:236-282,A:402-530)
Length = 176
Score = 27.0 bits (60), Expect = 4.2
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 176 QILRFHSRVPIVDPQRIN----PELIQ 198
++ F S++P + E I
Sbjct: 63 VLVFFMSKMPGPGAYNLPCLLPQEYIS 89
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} (A:)
Length = 423
Score = 26.6 bits (57), Expect = 4.7
Identities = 4/40 (10%), Positives = 9/40 (22%)
Query: 76 DPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRR 115
P+ +H + + + L Y
Sbjct: 104 TPLVTLHHFTSPLWFMKKGGFLREENLKHWEKYIEKVAEL 143
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly
roll motif, alpha ketoglutarate-dependent dioxygenase,
oxidoreductase; 1.90A {Escherichia coli}
(A:1-130,A:232-283)
Length = 182
Score = 26.4 bits (58), Expect = 5.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 242 VLLKGINDDPEILANLMRTFVELRIKPYYLHHPD 275
V L+ P+ L + F EL I P Y H
Sbjct: 45 VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEG 78
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} (A:1-71,A:178-250)
Length = 144
Score = 26.8 bits (59), Expect = 5.0
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPE 252
E + + + G P+ + N+P + ++ R A AG+ + P
Sbjct: 24 AAEFLHGIMDKGLPLVLL--TNYPSQTGQDLAN---RFATAGVDVPDSVF----YTSSPW 74
Query: 253 ILANLMRTF 261
I+ +
Sbjct: 75 IIRAALNKM 83
>2zmf_A The C-Terminal Gaf Domain Of Human Phosphodiesterase 10
{Homo sapiens} (A:)
Length = 189
Score = 26.3 bits (57), Expect = 5.7
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 179 RFHSRVPIVDPQRINPELIQCLKEAGKP--VYIAIHANHPYEFSEEAIAAISRLAN-AGI 235
RF+ V + L + G V ++ FS+ A +
Sbjct: 113 RFNREVDLYTGYTTRNILCXPIVSRGSVIGVVQXVNKISGSAFSKTDENNFKXFAVFCAL 172
Query: 236 IL 237
L
Sbjct: 173 AL 174
>2fur_A Hypothetical protein; 10640715, structural genomics, PSI,
protein structure initiative, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Thermoplasma
acidophilum} (A:1-185)
Length = 185
Score = 26.5 bits (58), Expect = 6.0
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 12/71 (16%)
Query: 240 QSVLLKG---INDDPE----ILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQK 292
S L+ G DD E + L V+ R + G F + E
Sbjct: 103 VSALIFGRPYEIDDTEKKIEVFRLLTEKLVKGRWDNSIKPSYEDLNGVFVFAVKPET--- 159
Query: 293 IVASLKEKISG 303
S K +
Sbjct: 160 --FSXKARTGP 168
>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein,
northeast structural genomics consortium, NESG, protein
structure initiative; 2.80A {Pseudomonas putida KT2440}
(A:147-296)
Length = 150
Score = 26.4 bits (58), Expect = 6.1
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL 237
++ L + + IH N+ +E + + G+ +
Sbjct: 104 PGGXLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEV 148
>1cu1_A Protein (protease/helicase NS3);
bifunctional,protease-helicase; 2.50A {Hepatitis c
virus} (A:203-343,A:497-638)
Length = 283
Score = 26.3 bits (57), Expect = 6.2
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 104 VCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPL 155
+C Y C E+ ++ L + L Q+ + WE +FTG +
Sbjct: 150 LCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHI 201
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein
structure initiative, structural genomics; 2.50A
{Chlorobium tepidum tls} (A:)
Length = 177
Score = 26.3 bits (57), Expect = 6.9
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 143 QIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202
E + S R + R ++ P R +I L
Sbjct: 78 TWLEGHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGXRQIVLSPLRSGGRVIGFL-- 135
Query: 203 AGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLL 244
+ + +S+ + +S ++++ I +S ++
Sbjct: 136 -------SFVSAEEKLWSDGDKSLLSGVSSSIAIAVSNALAY 170
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain,
ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum
pernix K1} (A:1-129)
Length = 129
Score = 26.2 bits (57), Expect = 6.9
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 184 VPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLAN-AGIILL 238
+ P P+ + +AG + + I A G ++
Sbjct: 75 SIVFVPAPFAPDAVYEAVDAGIRLVVVI----TEGIPVHDTMRFVNYARQKGATII 126
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} (A:1-201)
Length = 201
Score = 26.0 bits (57), Expect = 8.6
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 153 DPLILSHKRLQKVLKTLRYI-----KHVQILRFHSRVPIVDPQRINPELI-QCLKEA-GK 205
I S++R+ L T++Y+ ++V + + ++ + + + L+ GK
Sbjct: 30 GKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGK 89
Query: 206 PVYIAIHANHPYEFSEEAIAAISRLANAGIILL 238
V E AA+ A +ILL
Sbjct: 90 DVTFL-----NDCVGPEVEAAVKASAPGSVILL 117
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW
YORK SGX research center for structural genomics,
nysgxrc; 2.10A {Saccharomyces cerevisiae} (1:)
Length = 141
Score = 25.7 bits (56), Expect = 9.7
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 173 KHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLAN 232
K + I P+ K ++ + A + E + + +++N
Sbjct: 80 KIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENEL--LMKISN 137
Query: 233 AG 234
A
Sbjct: 138 AA 139
>1vhm_A Protein YEBR; structural genomics, unknown function; HET:
MES; 2.10A {Escherichia coli} (A:)
Length = 195
Score = 25.5 bits (55), Expect = 9.9
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 6/132 (4%)
Query: 133 AALAYIQEKSQIWEVIFTGGDP---LILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDP 189
A Y+ E + F G + + + + ++ + I
Sbjct: 64 WAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQ-RIEDVHVFDG-HIACD 121
Query: 190 QRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248
N E++ L + + + I + F++E + +L +L+ + K
Sbjct: 122 AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 181
Query: 249 DDPEILANLMRT 260
+
Sbjct: 182 SVAGEGGSHHHH 193
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.139 0.412
Gapped
Lambda K H
0.267 0.0486 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,851,483
Number of extensions: 136359
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 50
Length of query: 352
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 263
Effective length of database: 1,947,404
Effective search space: 512167252
Effective search space used: 512167252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)