BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase
protein [Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 352
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQF 60
MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQF
Sbjct: 1 MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQF 60
Query: 61 IPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGS 120
IPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGS
Sbjct: 61 IPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGS 120
Query: 121 QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRF 180
QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRF
Sbjct: 121 QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRF 180
Query: 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240
HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ
Sbjct: 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240
Query: 241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300
SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK
Sbjct: 241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300
Query: 301 ISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYPPKSS 352
ISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYPPKSS
Sbjct: 301 ISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYPPKSS 352
>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 384
Score = 30.8 bits (68), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 46/193 (23%)
Query: 105 CPVYCRFCFRREMVGSQK---------------------GTVLSSKDTEAALAYIQEKSQ 143
C + C FC+ G+QK G +D E + +
Sbjct: 124 CSLTCSFCY----TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG-MVIPSVGRK 178
Query: 144 IWEVIFTG-GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202
I ++ G G+PL V K+L L F R + P + + +E
Sbjct: 179 ISNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
Query: 203 AGKPVYIAIHA--------------NHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248
G + I++HA +P E +A L+NA I + V+LKGIN
Sbjct: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGIN 293
Query: 249 DDPEILANLMRTF 261
D P NL++
Sbjct: 294 DSPRDALNLIKIL 306
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 28.5 bits (62), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 209 IAIHANHPYEFSEEAIAAISRLANAGIILLSQ----SVLLKGINDDPEILANLMR----- 259
+A N Y F E +S+ + LL++ +++ G ++ PEI+ L +
Sbjct: 51 LAKKVNETYSFLSEICDQLSKYHS----LLTENNCLTIVWDGKDETPEIIGQLHQRIDIP 106
Query: 260 -TFVELRIKPYYL---HHPDLAAGTSHFR-------LTIEEGQKIVASLKEKISGLCQPF 308
T +L +L H+ L+ T R L E ++ ++SG C
Sbjct: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166
Query: 309 YILDLPGGYGKVKIDTHNIKKVGN 332
IL L G Y ++ T KK+ N
Sbjct: 167 RILSLDGIYSELAETTLKCKKLSN 190
>gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 149 FTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRI 192
T G+P+++ ++ Q + + L ++ I R ++R V+P+ +
Sbjct: 38 LTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAV 81
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 24.6 bits (52), Expect = 2.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 209 IAIHANHPYEFSEEAIAAISRLANAGIILLSQSV---------LLKGINDDPEILANLMR 259
IA+ P E+S E + +IS I+L+++ + L K + + E+L N
Sbjct: 178 IALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLEN-NY 236
Query: 260 TFVELRI 266
T E+RI
Sbjct: 237 TKSEMRI 243
>gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 138
Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYI----QEKSQIWEV 147
+YP + ++ V R CF + +Q+ + S + EAA I + ++W
Sbjct: 9 KYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWIC 68
Query: 148 IF 149
+F
Sbjct: 69 VF 70
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 320 VKIDTHNIKKVGNGSYCITDHHNIVH 345
+++ H ++K G G +C+ H + VH
Sbjct: 460 IEVVRHRLEKAGLGEFCLELHSHKVH 485
>gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 238
Score = 23.9 bits (50), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLS 239
EL + L GK V++ + ++ AAI +AN G+ +L+
Sbjct: 54 ELARDLISDGKSVFLDMKL---FDIGSSVTAAIEHIANMGVAMLT 95
>gi|254780822|ref|YP_003065235.1| thioredoxin [Candidatus Liberibacter asiaticus str. psy62]
Length = 107
Score = 23.5 bits (49), Expect = 6.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 11 AQDLYNANLIKKEQIDEIKEISNHYSIALTPVI 43
A +L + I K I+E EIS Y I+ P +
Sbjct: 45 ADELADKVKITKLDIEESSEISTRYQISSIPTL 77
>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 354
Score = 23.1 bits (48), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 156 ILSHKRLQKVLKTLRYI 172
+L+H ++KVL+TL Y+
Sbjct: 228 LLAHSAMRKVLETLDYV 244
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,349
Number of Sequences: 1233
Number of extensions: 10142
Number of successful extensions: 23
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 11
length of query: 352
length of database: 328,796
effective HSP length: 75
effective length of query: 277
effective length of database: 236,321
effective search space: 65460917
effective search space used: 65460917
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)