BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] (352 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQF 60 MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQF Sbjct: 1 MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQF 60 Query: 61 IPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGS 120 IPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGS Sbjct: 61 IPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGS 120 Query: 121 QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRF 180 QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRF Sbjct: 121 QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRF 180 Query: 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ Sbjct: 181 HSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 Query: 241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK Sbjct: 241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300 Query: 301 ISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYPPKSS 352 ISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYPPKSS Sbjct: 301 ISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYPPKSS 352 >gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 30.8 bits (68), Expect = 0.040, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 46/193 (23%) Query: 105 CPVYCRFCFRREMVGSQK---------------------GTVLSSKDTEAALAYIQEKSQ 143 C + C FC+ G+QK G +D E + + Sbjct: 124 CSLTCSFCY----TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG-MVIPSVGRK 178 Query: 144 IWEVIFTG-GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202 I ++ G G+PL V K+L L F R + P + + +E Sbjct: 179 ISNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 Query: 203 AGKPVYIAIHA--------------NHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248 G + I++HA +P E +A L+NA I + V+LKGIN Sbjct: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGIN 293 Query: 249 DDPEILANLMRTF 261 D P NL++ Sbjct: 294 DSPRDALNLIKIL 306 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 28.5 bits (62), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 24/144 (16%) Query: 209 IAIHANHPYEFSEEAIAAISRLANAGIILLSQ----SVLLKGINDDPEILANLMR----- 259 +A N Y F E +S+ + LL++ +++ G ++ PEI+ L + Sbjct: 51 LAKKVNETYSFLSEICDQLSKYHS----LLTENNCLTIVWDGKDETPEIIGQLHQRIDIP 106 Query: 260 -TFVELRIKPYYL---HHPDLAAGTSHFR-------LTIEEGQKIVASLKEKISGLCQPF 308 T +L +L H+ L+ T R L E ++ ++SG C Sbjct: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166 Query: 309 YILDLPGGYGKVKIDTHNIKKVGN 332 IL L G Y ++ T KK+ N Sbjct: 167 RILSLDGIYSELAETTLKCKKLSN 190 >gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/44 (22%), Positives = 25/44 (56%) Query: 149 FTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRI 192 T G+P+++ ++ Q + + L ++ I R ++R V+P+ + Sbjct: 38 LTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAV 81 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 24.6 bits (52), Expect = 2.4, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%) Query: 209 IAIHANHPYEFSEEAIAAISRLANAGIILLSQSV---------LLKGINDDPEILANLMR 259 IA+ P E+S E + +IS I+L+++ + L K + + E+L N Sbjct: 178 IALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLEN-NY 236 Query: 260 TFVELRI 266 T E+RI Sbjct: 237 TKSEMRI 243 >gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62] Length = 138 Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYI----QEKSQIWEV 147 +YP + ++ V R CF + +Q+ + S + EAA I + ++W Sbjct: 9 KYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWIC 68 Query: 148 IF 149 +F Sbjct: 69 VF 70 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 16/26 (61%) Query: 320 VKIDTHNIKKVGNGSYCITDHHNIVH 345 +++ H ++K G G +C+ H + VH Sbjct: 460 IEVVRHRLEKAGLGEFCLELHSHKVH 485 >gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 238 Score = 23.9 bits (50), Expect = 4.8, Method: Compositional matrix adjust. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLS 239 EL + L GK V++ + ++ AAI +AN G+ +L+ Sbjct: 54 ELARDLISDGKSVFLDMKL---FDIGSSVTAAIEHIANMGVAMLT 95 >gi|254780822|ref|YP_003065235.1| thioredoxin [Candidatus Liberibacter asiaticus str. psy62] Length = 107 Score = 23.5 bits (49), Expect = 6.1, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 11 AQDLYNANLIKKEQIDEIKEISNHYSIALTPVI 43 A +L + I K I+E EIS Y I+ P + Sbjct: 45 ADELADKVKITKLDIEESSEISTRYQISSIPTL 77 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 23.1 bits (48), Expect = 8.1, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 14/17 (82%) Query: 156 ILSHKRLQKVLKTLRYI 172 +L+H ++KVL+TL Y+ Sbjct: 228 LLAHSAMRKVLETLDYV 244 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.139 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,349 Number of Sequences: 1233 Number of extensions: 10142 Number of successful extensions: 23 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 11 length of query: 352 length of database: 328,796 effective HSP length: 75 effective length of query: 277 effective length of database: 236,321 effective search space: 65460917 effective search space used: 65460917 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)