HHsearch alignment for GI: 254781066 and conserved domain: COG0173
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=493.48 Aligned_cols=308 Identities=23% Similarity=0.304 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCEE-CCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998798898478210-568985445412410247886783200-002858999989874468899
Q gi|254781066|r 21 FLLKRNMIQSSLREYFVENQFIEIDSMSLQ-YSPGNETHIRAFSTELIIQDHIRKPLY-LQTSPEFSCKKLLAAGEEKIF 98 (355)
Q Consensus 21 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~-~~~~g~~~~~~f~t~~~~~~~~~~~~y-L~~SPql~lK~ll~~G~~rvy 98 (355)
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEG---ARDfLVPSRv~~G---~FYALPQSPQlfKQLLMvsGfdRYy 213 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEG---ARDFLVPSRVHPG---KFYALPQSPQLFKQLLMVAGFDRYY 213 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC---CCCCCCCCCCCCC---CEEECCCCHHHHHHHHHHHCCCCEE
T ss_conf 999999999999997765498573467414679865---5443013455899---6530688879999999880533002
Q ss_pred HHHHHHCCCCC--CCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98864245677--7544843002000115776578777557888776664188300022343324677320788886566
Q gi|254781066|r 99 CFAHAWRNGEQ--GCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFAR 176 (355)
Q Consensus 99 qig~~FRaE~~--~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~ 176 (355)
T Consensus 214 QIarCFRDEDlRaDRQ--PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~---------i~l~~pFprmtY~eAm~~ 282 (585)
T COG0173 214 QIARCFRDEDLRADRQ--PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKG---------IELKTPFPRMTYAEAMRR 282 (585)
T ss_pred EEEEEECCCCCCCCCC--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC---------CCCCCCCCCCCHHHHHHH
T ss_conf 3565404664444468--75336767764388999999999999999998509---------754898561059999997
Q ss_pred HCCCCCCCCCC--------------------------------CCC-----CCCHHHHHHHHHHCCCCCC------CCC-
Q ss_conf 60876532345--------------------------------556-----2327999999997688778------765-
Q gi|254781066|r 177 YANIDLGTTLD--------------------------------NPD-----QPDRHLLYLQAQQAGIRVA------HDD- 212 (355)
Q Consensus 177 ~~~~d~~~~~~--------------------------------~~~-----~~~~~~~~~~~~~~~~~~~------~~~- 212 (355)
T Consensus 283 YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~ 362 (585)
T COG0173 283 YGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGL 362 (585)
T ss_pred HCCCCCCCCCCCEEHHHHHHHCCCCCCEEHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 38999855688352127987447885130314506982799984786646889999999999974987438999716876
Q ss_pred --CHH-----HHHHHHHH-----------------------------------CEECCCCCCCCCCCCCCCCHH------
Q ss_conf --347-----89876643-----------------------------------003622376754432576888------
Q gi|254781066|r 213 --TWS-----DIFSRILI-----------------------------------EKIEPNLGINCCTILDRYPAP------ 244 (355)
Q Consensus 213 --~~~-----~~~~~l~~-----------------------------------~~ie~~l~~~~pvfi~~yP~~------ 244 (355)
T Consensus 363 ~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~--~~f~WVvDFPlfE~~ee~ 440 (585)
T COG0173 363 KGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQ--FKFLWVVDFPLFEWDEEE 440 (585)
T ss_pred CCHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEEECCCCCCCCCC
T ss_conf 661776447899999999828777888999669488999988999999888738778343--248999706766775345
Q ss_pred ------HHHHCCCCCCCCC---------CCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCC-CCHHHHH
Q ss_conf ------8641367877836---------33022022367122564021069999999999999999728885-3010189
Q gi|254781066|r 245 ------ESALANIYPADPR---------FTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNE-TYPIDED 308 (355)
Q Consensus 245 ------~~plak~~~~~~~---------va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e-~~~~D~~ 308 (355)
T Consensus 441 ~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~l-----g~~~eea~ekFGF 515 (585)
T COG0173 441 GRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEIL-----GISPEEAEEKFGF 515 (585)
T ss_pred CCEECCCCCCCCCCCCCHHHHHCCHHHHHHHHCCEEECCEEECCCEEEECCHHHHHHHHHHC-----CCCHHHHHHHHHH
T ss_conf 86740448878998442445416977764532567760275135436407889999999981-----9998999988778
Q ss_pred HHHHH-CCCCCCCEEECCHHHHHHHHHCCCCHHHHCCCCCCCCCC
Q ss_conf 99986-188963245315999989981559713111585648743
Q gi|254781066|r 309 FLACL-TEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQ 352 (355)
Q Consensus 309 fl~al-~G~PPhgG~glGidRLvm~l~g~~~Irdvi~FP~~r~~~ 352 (355)
T Consensus 516 ll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 516 LLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHHHHHCCCCCCCCEECCHHHHHHHHCCCCCHHHEEECCCCCCCC
T ss_conf 999976589997624245999999982897444213147886555