HHsearch alignment for GI: 254781066 and conserved domain: COG2269

>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=605.23  Aligned_cols=321  Identities=42%  Similarity=0.732  Sum_probs=304.3

Q ss_pred             CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCH
Q ss_conf             898747883126154899999999999999999987988984782105689854454124102478867-8320000285
Q gi|254781066|r    4 IPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHI-RKPLYLQTSP   82 (355)
Q Consensus         4 ~p~~~~~~~~~~~r~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~-~~~~yL~~SP   82 (355)
T Consensus         1 ~~~~~~W~p~~~~~~---ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSP   77 (322)
T COG2269           1 MSETPWWQPSASIDN---LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSP   77 (322)
T ss_pred             CCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCC
T ss_conf             998876888888899---99899999999999987692585336765078986423445667654676665303665680


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
Q ss_conf             89999898744688999886424567775448430020001157765787775578887766641883000223433246
Q gi|254781066|r   83 EFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPF  162 (355)
Q Consensus        83 ql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T Consensus        78 Ey~mKrLLAag~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~----------------  141 (322)
T COG2269          78 EYHMKRLLAAGSGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC----------------  141 (322)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC----------------
T ss_conf             7778999975488601454777263325667984367651006785999999999999999703----------------


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCC
Q ss_conf             77320788886566608765323455562327999999997688778765347898766430036223767544325768
Q gi|254781066|r  163 SEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYP  242 (355)
Q Consensus       163 ~~~~~i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP  242 (355)
T Consensus       142 ~~~E~ls~~eaF~r~~gid~l~-------~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP  214 (322)
T COG2269         142 VEAERLSYQEAFLRYLGIDPLS-------ADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFP  214 (322)
T ss_pred             CCCCEEEHHHHHHHHHCCCCCC-------CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf             7853555999999983889452-------429999999985587777755899999998886407566888844887272


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf             88864136787783633022022367122564021069999999999999999728885301018999986188963245
Q gi|254781066|r  243 APESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTEMPQSSGI  322 (355)
Q Consensus       243 ~~~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~G~PPhgG~  322 (355)
T Consensus       215 ~~qaaLA~i~~~D~rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Al~~mP~cSGv  294 (322)
T COG2269         215 ASQAALAQISTGDPRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALARMPPCSGV  294 (322)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHEEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf             77887604677896256664320100221024000178899999999988999863788777887899999858986541


Q ss_pred             ECCHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf             3159999899815597131115856487
Q gi|254781066|r  323 AMGFDRLVMLVTGANNINEVIWTPFSQS  350 (355)
Q Consensus       323 glGidRLvm~l~g~~~Irdvi~FP~~r~  350 (355)
T Consensus       295 ALG~DRLvmLalg~~~i~~Vi~f~v~~a  322 (322)
T COG2269         295 ALGFDRLVMLALGAESIDDVIAFPVARA  322 (322)
T ss_pred             EECHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf             3238899999818214877761311469