HHsearch alignment for GI: 254781066 and conserved domain: COG2269
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=605.23 Aligned_cols=321 Identities=42% Similarity=0.732 Sum_probs=304.3
Q ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCH
Q ss_conf 898747883126154899999999999999999987988984782105689854454124102478867-8320000285
Q gi|254781066|r 4 IPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHI-RKPLYLQTSP 82 (355)
Q Consensus 4 ~p~~~~~~~~~~~r~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~-~~~~yL~~SP 82 (355)
T Consensus 1 ~~~~~~W~p~~~~~~---ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSP 77 (322)
T COG2269 1 MSETPWWQPSASIDN---LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSP 77 (322)
T ss_pred CCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCC
T ss_conf 998876888888899---99899999999999987692585336765078986423445667654676665303665680
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
Q ss_conf 89999898744688999886424567775448430020001157765787775578887766641883000223433246
Q gi|254781066|r 83 EFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPF 162 (355)
Q Consensus 83 ql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T Consensus 78 Ey~mKrLLAag~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~---------------- 141 (322)
T COG2269 78 EYHMKRLLAAGSGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC---------------- 141 (322)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC----------------
T ss_conf 7778999975488601454777263325667984367651006785999999999999999703----------------
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCC
Q ss_conf 77320788886566608765323455562327999999997688778765347898766430036223767544325768
Q gi|254781066|r 163 SEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYP 242 (355)
Q Consensus 163 ~~~~~i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP 242 (355)
T Consensus 142 ~~~E~ls~~eaF~r~~gid~l~-------~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP 214 (322)
T COG2269 142 VEAERLSYQEAFLRYLGIDPLS-------ADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFP 214 (322)
T ss_pred CCCCEEEHHHHHHHHHCCCCCC-------CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 7853555999999983889452-------429999999985587777755899999998886407566888844887272
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 88864136787783633022022367122564021069999999999999999728885301018999986188963245
Q gi|254781066|r 243 APESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTEMPQSSGI 322 (355)
Q Consensus 243 ~~~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~G~PPhgG~ 322 (355)
T Consensus 215 ~~qaaLA~i~~~D~rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Al~~mP~cSGv 294 (322)
T COG2269 215 ASQAALAQISTGDPRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALARMPPCSGV 294 (322)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHEEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 77887604677896256664320100221024000178899999999988999863788777887899999858986541
Q ss_pred ECCHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf 3159999899815597131115856487
Q gi|254781066|r 323 AMGFDRLVMLVTGANNINEVIWTPFSQS 350 (355)
Q Consensus 323 glGidRLvm~l~g~~~Irdvi~FP~~r~ 350 (355)
T Consensus 295 ALG~DRLvmLalg~~~i~~Vi~f~v~~a 322 (322)
T COG2269 295 ALGFDRLVMLALGAESIDDVIAFPVARA 322 (322)
T ss_pred EECHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf 3238899999818214877761311469