HHsearch alignment for GI: 254781066 and conserved domain: PRK00476
>PRK00476 aspS aspartyl-tRNA synthetase; Validated.
Probab=100.00 E-value=0 Score=564.20 Aligned_cols=327 Identities=23% Similarity=0.294 Sum_probs=231.1
Q ss_pred CCCCCCCC--CHHHCCCHH----------HHHHHHHHHHHHHHHHHHHCCCEEEECCCEE-CCCCCCCCCCCEEEECCCC
Q ss_conf 88987478--831261548----------9999999999999999998798898478210-5689854454124102478
Q gi|254781066|r 3 QIPSQPWW--NRDFHYRRR----------PFLLKRNMIQSSLREYFVENQFIEIDSMSLQ-YSPGNETHIRAFSTELIIQ 69 (355)
Q Consensus 3 ~~p~~~~~--~~~~~~r~R----------~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~-~~~~g~~~~~~f~t~~~~~ 69 (355)
T Consensus 111 P~~~~~~~~~~e~~Rl~~RyLDLr~~~~~~~fr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eG---A~~F~vpsr~~ 187 (587)
T PRK00476 111 PFQIDDETNVSEELRLKYRYLDLRRPEMQNNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEG---ARDYLVPSRVH 187 (587)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC---CCCCCCCCCCC
T ss_conf 988655667778886554788872177889999999999999999997597400475432568666---64430131057
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86783200-00285899998987446889998864245677754484300200011577657877755788877666418
Q gi|254781066|r 70 DHIRKPLY-LQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVAN 148 (355)
Q Consensus 70 ~~~~~~~y-L~~SPql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~ 148 (355)
T Consensus 188 ---~~~fyaL~qSPQLykq~L~vgG~erVyeig~~FRnE~~~t~r~pEFt~lE~E~af~d~~dvm~~~E~li~~v~~~v~ 264 (587)
T PRK00476 188 ---PGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMDLMEGLIRHVFKEVL 264 (587)
T ss_pred ---CCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf ---88551356797999999885175527996431238888766682342311111116899999999999999999971
Q ss_pred CCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--------CC-------------------------CCC-----C
Q ss_conf 830002234332467732078888656660876532--------34-------------------------555-----6
Q gi|254781066|r 149 QKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGT--------TL-------------------------DNP-----D 190 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~d~~~--------~~-------------------------~~~-----~ 190 (355)
T Consensus 265 ~---------~~l~~pf~rit~~eai~~yG~DKPDlR~~~~l~d~~~~~~~~~~~~f~~~~~~~~~~v~~i~~p~~~~~~ 335 (587)
T PRK00476 265 G---------VDLTKPFPRMTYAEAMRRYGSDKPDLRFPLELVDVTDLFKDSGFKVFAGAANDPGGRVKAIRVPGGASLS 335 (587)
T ss_pred C---------CCCCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9---------7478884245699999985799965457621546688761564167899986058869999746867666
Q ss_pred CCCHHHHHHHHHHCCCC------CCCCCC--------------------------------------H---HHHHHHHHH
Q ss_conf 23279999999976887------787653--------------------------------------4---789876643
Q gi|254781066|r 191 QPDRHLLYLQAQQAGIR------VAHDDT--------------------------------------W---SDIFSRILI 223 (355)
Q Consensus 191 ~~~~~~~~~~~~~~~~~------~~~~~~--------------------------------------~---~~~~~~l~~ 223 (355)
T Consensus 336 r~~id~l~~~~~~~~~~~l~~i~~~~~~~~spi~k~~~~~~~~~l~~~~~~~~gd~~~f~~~~~~~~~~~lg~~r~~~~~ 415 (587)
T PRK00476 336 RKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELEALLERTGAKDGDLIFFGADKKKVVNDALGALRLKLGK 415 (587)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCHHHHHHHH
T ss_conf 66799999999981887733799805556560776469999999999848877877999359607888763317999988
Q ss_pred --CEECCCCCCCCCCCCCCCCH-----H-------HHHHCCCCCCC-------CC--CCCCCEEEECCEECCCCCHHCCC
Q ss_conf --00362237675443257688-----8-------86413678778-------36--33022022367122564021069
Q gi|254781066|r 224 --EKIEPNLGINCCTILDRYPA-----P-------ESALANIYPAD-------PR--FTKRFELYACNIELCNACDELLD 280 (355)
Q Consensus 224 --~~ie~~l~~~~pvfi~~yP~-----~-------~~plak~~~~~-------~~--va~rfdl~i~G~El~ng~~El~d 280 (355)
T Consensus 416 ~~~li~~~~--~~p~fV~dfPlfe~~~~~~~~~a~hhPFt~P~~~~~~~~~~dp~~~~~~~yDLv~~G~El~~Gs~Ri~d 493 (587)
T PRK00476 416 ELGLIDEDK--FAFLWVVDFPMFEYDEEEGRYVAAHHPFTMPKDEDLELLETDPGKALAYAYDLVLNGYELGGGSIRIHR 493 (587)
T ss_pred HHCCCCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHEEEEEEEECCEEECCCEEECCC
T ss_conf 846666666--642689814531144202563102177458885378877538123234674053077895135032279
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHH-CCCCCCCEEECCHHHHHHHHHCCCCHHHHCCCCCCCCCCC
Q ss_conf 99999999999999972888530101---8999986-1889632453159999899815597131115856487433
Q gi|254781066|r 281 PIEQRHRFEKEMQEKKKIYNETYPID---EDFLACL-TEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQE 353 (355)
Q Consensus 281 ~~~q~~rf~~q~~~k~~~~~e~~~~D---~~fl~al-~G~PPhgG~glGidRLvm~l~g~~~Irdvi~FP~~r~~~~ 353 (355)
T Consensus 494 ~~~q~~~~~~------~gl~~~-~~~~~F~~yl~al~yG~PPhgG~GlGiDRLvmlltg~~nIRDVI~FPkt~~g~d 563 (587)
T PRK00476 494 PEIQEKVFEI------LGISEE-EAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQSAAD 563 (587)
T ss_pred HHHHHHHHHH------CCCCHH-HHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHEEEECCCCCCCCC
T ss_conf 9999999998------599989-998888899999767999976376149999999759995530650789999877