HHsearch alignment for GI: 254781066 and conserved domain: PRK12445
>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=708.05 Aligned_cols=340 Identities=27% Similarity=0.457 Sum_probs=304.7
Q ss_pred CCCCCCCCCC--CHHHCCCHHH-----------HHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECC
Q ss_conf 9988987478--8312615489-----------99999999999999999879889847821056898544541241024
Q gi|254781066|r 1 MHQIPSQPWW--NRDFHYRRRP-----------FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELI 67 (355)
Q Consensus 1 ~~~~p~~~~~--~~~~~~r~R~-----------~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~ 67 (355)
T Consensus 150 l~plP~k~~g~~d~e~R~r~RyLDLir~~~~~~~~~~Rs~ii~~iR~~l~~~gF~EVeTPil~~~~gGa~-Arpf~t~-- 226 (505)
T PRK12445 150 LRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGAS-ARPFITH-- 226 (505)
T ss_pred CCCCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC-CCEEEEC--
T ss_conf 7898974557878877634111143659999999999999999999999977938997887555458766-6103304--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78867832000028589999898744688999886424567775448430020001157765787775578887766641
Q gi|254781066|r 68 IQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVA 147 (355)
Q Consensus 68 ~~~~~~~~~yL~~SPql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~ 147 (355)
T Consensus 227 -~~~~~~~~yL~qSPQLykk~LmvgGfdRvfeI~r~FRnE~~~~~H~PEFT~lE~e~af~d~~dvm~l~E~li~~i~~~v 305 (505)
T PRK12445 227 -HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEV 305 (505)
T ss_pred -CCCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -6678867434169399999998579744576278760788886654445435687632789899999999999999984
Q ss_pred -CCCEECCCCCCCCCCCCCCCCCHHHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCE
Q ss_conf -88300022343324677320788886566608-7653234555623279999999976887787653478987664300
Q gi|254781066|r 148 -NQKIFSFQNVNCNPFSEPEYITVAEAFARYAN-IDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEK 225 (355)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (355)
T Consensus 306 ~g~~~i~y~~~~~d~~~pf~rlt~~eai~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~e~ 379 (505)
T PRK12445 306 LGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMAD------LDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEV 379 (505)
T ss_pred CCCCEEEECCCHHCCCCCCCCCCHHHHHHHHCCCCCHHH------CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 488358665201201698410349999998568887453------34469999999985985344434427999998877
Q ss_pred ECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 36223767544325768888641367877836330220223671225640210699999999999999997288853010
Q gi|254781066|r 226 IEPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPI 305 (355)
Q Consensus 226 ie~~l~~~~pvfi~~yP~~~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~ 305 (355)
T Consensus 380 ~e~~l--~~P~fv~d~P~e~splak~~~~~p~~t~rfdl~i~G~Ei~nG~~el~Dp~~Q~~rf~~q~~~k~~g~~e~~~~ 457 (505)
T PRK12445 380 AEAHL--IQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFY 457 (505)
T ss_pred HHHCC--CCCCCCCCCCCCCCCHHCCCCCCHHHHHEEEEEECCEEEEECEECCCCHHHHHHHHHHHHHHHHCCCCCHHHC
T ss_conf 77505--5554244775445830016799841401453511899987460226899999999999887775476600012
Q ss_pred HHHHHHHHC-CCCCCCEEECCHHHHHHHHHCCCCHHHHCCCCCCCCCC
Q ss_conf 189999861-88963245315999989981559713111585648743
Q gi|254781066|r 306 DEDFLACLT-EMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQ 352 (355)
Q Consensus 306 D~~fl~al~-G~PPhgG~glGidRLvm~l~g~~~Irdvi~FP~~r~~~ 352 (355)
T Consensus 458 de~fl~Al~yG~PPhgG~glGiDRLvMlLtg~~sIRdVI~FP~~rp~~ 505 (505)
T PRK12445 458 DEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK 505 (505)
T ss_pred HHHHHHHHHCCCCCHHCCHHHHHHHHHHHCCCCCHHEECCCCCCCCCC
T ss_conf 288999965699850034379999999981999564071699989999