HHsearch alignment for GI: 254781066 and conserved domain: cd00645

>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=98.35  E-value=2.6e-05  Score=50.91  Aligned_cols=262  Identities=16%  Similarity=0.170  Sum_probs=122.1

Q ss_pred             HHHHHHHHHH-----HCCCEEEECCCEECC-CC-CCC---CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH-HH-HHHH
Q ss_conf             9999999999-----879889847821056-89-854---45412410247886783200002858999989-87-4468
Q gi|254781066|r   28 IQSSLREYFV-----ENQFIEIDSMSLQYS-PG-NET---HIRAFSTELIIQDHIRKPLYLQTSPEFSCKKL-LA-AGEE   95 (355)
Q Consensus        28 i~~~iR~ff~-----~~gF~EV~TPiL~~~-~~-g~~---~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~l-l~-~G~~   95 (355)
T Consensus         3 aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlND~LnG~ErpV~F~i--k~~~~~~~EIVhSLAKW-KR~aL~~y~f~   79 (309)
T cd00645           3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKV--KALPDATLEVVHSLAKW-KRLALARYGFS   79 (309)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEECCCEEECCCCCCCCCCCCEEECEEEEC--CCCCCCEEEEEEEHHHH-HHHHHHHCCCC
T ss_conf             4999999999999997392796666177079887768787460228635--78899726997135888-99999966998


Q ss_pred             ---HHHHHHHHHCC-CCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCE----ECCCCCCCCCCCCCCC
Q ss_conf             ---89998864245-677754484300200011577657877755788877666418830----0022343324677320
Q gi|254781066|r   96 ---KIFCFAHAWRN-GEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKI----FSFQNVNCNPFSEPEY  167 (355)
Q Consensus        96 ---rvyqig~~FRa-E~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~  167 (355)
T Consensus        80 ~geGlytdMnAiR~DE~ldn~HSiyVDQWDWEkvI~~~dRnl~~Lk~tV~~Iy~~ik~tE~~v~~~yp~l~~~Lp~~I~F  159 (309)
T cd00645          80 LGEGLYTDMNAIRPDEDLDNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKYPQLEPILPEEITF  159 (309)
T ss_pred             CCCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEE
T ss_conf             99430127762557755687612898500353427852258999999999999999999999999762034408886089


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             78888656660876532345556232799999999768877876534789876643003622376754432576888864
Q gi|254781066|r  168 ITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESA  247 (355)
Q Consensus       168 i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~~~p  247 (355)
T Consensus       160 itsqeL~~~YP~Lt-----------~keRE~~i~ke~-----------------------------gaVFi~~IG~---~  196 (309)
T cd00645         160 ITSQELEDRYPDLT-----------PKEREDAICKEH-----------------------------GAVFIIGIGG---K  196 (309)
T ss_pred             ECHHHHHHHCCCCC-----------HHHHHHHHHHHH-----------------------------CCEEEEECCC---C
T ss_conf             62899997777999-----------789999999972-----------------------------9399994488---5


Q ss_pred             HC--CCCC----CCCCCCCCCEEEE------CCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-C
Q ss_conf             13--6787----7836330220223------67122564021069999999999999999728885301018999986-1
Q gi|254781066|r  248 LA--NIYP----ADPRFTKRFELYA------CNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACL-T  314 (355)
Q Consensus       248 la--k~~~----~~~~va~rfdl~i------~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al-~  314 (355)
T Consensus       197 L~~g~~Hd~RApDYDDW~LNGDilvw~~vl~~a~ElSSMGIRVd-----~~~L~~QL~~~~~~dr~~l~----~Hk~ll~  267 (309)
T cd00645         197 LSDGKKHDGRAPDYDDWTLNGDILVWNPVLQRAFELSSMGIRVD-----EESLQKQLKLAGDEDRLELP----FHKMLLN  267 (309)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECHHCCCEEEEECCEEEEC-----HHHHHHHHHHCCCHHHHCCH----HHHHHHC
T ss_conf             78989566779998675447648997023073225634646888-----99999999975983543598----9999974


Q ss_pred             C-CCCCCEEECCHHHHHHHHHCCCCHHHHCC
Q ss_conf             8-89632453159999899815597131115
Q gi|254781066|r  315 E-MPQSSGIAMGFDRLVMLVTGANNINEVIW  344 (355)
Q Consensus       315 G-~PPhgG~glGidRLvm~l~g~~~Irdvi~  344 (355)
T Consensus       268 ~~LP~TIGGGIGQSRlcM~lL~KaHIGEVQ~  298 (309)
T cd00645         268 GELPQTIGGGIGQSRLCMFLLQKAHIGEVQA  298 (309)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf             9998452376039999999975373223675