HHsearch alignment for GI: 254781066 and conserved domain: cd00769
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.55 E-value=0.08 Score=30.28 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCEECCCCC----CCCCCCEEEECCCCCCCCCC-CCCCCCHHHHHHHHHHH----HH-
Q ss_conf 9999999999999879889847821056898----54454124102478867832-00002858999989874----46-
Q gi|254781066|r 25 RNMIQSSLREYFVENQFIEIDSMSLQYSPGN----ETHIRAFSTELIIQDHIRKP-LYLQTSPEFSCKKLLAA----GE- 94 (355)
Q Consensus 25 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g----~~~~~~f~t~~~~~~~~~~~-~yL~~SPql~lK~ll~~----G~- 94 (355)
T Consensus 2 ~~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~~~~~~i~l----~NPls~e~~~lR~sLlp~LL~~~~~N~~r~~~ 77 (198)
T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVEL----SNPLSEEYSVLRTSLLPGLLDALARNLNRKNK 77 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 67999999999997897141306768989998724887873897----08865668898887799999999865056777
Q ss_pred -HHHHHHHHHHCCCCC
Q ss_conf -889998864245677
Q gi|254781066|r 95 -EKIFCFAHAWRNGEQ 109 (355)
Q Consensus 95 -~rvyqig~~FRaE~~ 109 (355)
T Consensus 78 ~~~lFEiG~vy~~~~~ 93 (198)
T cd00769 78 PLRLFEIGRVFLKDED 93 (198)
T ss_pred CCEEEEEEEEEECCCC
T ss_conf 7328997638966888