HHsearch alignment for GI: 254781066 and conserved domain: cd00775
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=0 Score=655.32 Aligned_cols=325 Identities=29% Similarity=0.478 Sum_probs=291.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54899999999999999999987988984782105689854454124102478867832000028589999898744688
Q gi|254781066|r 17 RRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEK 96 (355)
Q Consensus 17 r~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~r 96 (355)
T Consensus 3 ~~~~~~~~Rs~i~~~iR~ff~~~gF~Ev~TPiL~~~~~g~-~~~~f~~~~---~~~~~~~yL~qSpQl~~q~l~~~g~~r 78 (329)
T cd00775 3 EVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGA-AARPFITHH---NALDMDLYLRIAPELYLKRLIVGGFER 78 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC-CCCCEEECC---CCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8999999999999999999998898899798655668875-675313224---467867230689899999998567776
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9998864245677754484300200011577657877755788877666418-830002234332467732078888656
Q gi|254781066|r 97 IFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVAN-QKIFSFQNVNCNPFSEPEYITVAEAFA 175 (355)
Q Consensus 97 vyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~e~~~ 175 (355)
T Consensus 79 vfqI~p~FR~E~~~~rHl~EFtmle~E~~f~d~~dvm~~~E~li~~i~~~~~~~~~~~~~~~~~d~~~pf~rit~~ea~~ 158 (329)
T cd00775 79 VYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALK 158 (329)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 79981022479999774734563457774479999999999999999999838875314661235689974376999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 66087653234555623279999999976887787653478987664300362237675443257688886413678778
Q gi|254781066|r 176 RYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPAD 255 (355)
Q Consensus 176 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~~~plak~~~~~ 255 (355)
T Consensus 159 ~~~g~~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~--~~p~fi~dyP~~~~pf~~~~~~~ 233 (329)
T cd00775 159 EKTGIDFPELDLE---QPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTL--IQPTFIIDHPVEISPLAKRHRSN 233 (329)
T ss_pred HHHCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEECCHHHCCCHHHCCCCC
T ss_conf 9858998766732---389999998775686656787789999999999997513--79689947701118443129999
Q ss_pred CCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCEEECCHHHHHHHHH
Q ss_conf 36330220223671225640210699999999999999997288853010189999861-88963245315999989981
Q gi|254781066|r 256 PRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVT 334 (355)
Q Consensus 256 ~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~-G~PPhgG~glGidRLvm~l~ 334 (355)
T Consensus 234 ~~~~~~fdl~~~G~Ei~~G~~el~d~~~q~~r~~~~~~~~~~~~~~~~~~de~yl~a~k~G~pPhgG~glGldRLvm~l~ 313 (329)
T cd00775 234 PGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLT 313 (329)
T ss_pred CCEEEECCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH
T ss_conf 77010012456877984153311799999999999999985467511242399999966799986114099999999993
Q ss_pred CCCCHHHHCCCCCCCC
Q ss_conf 5597131115856487
Q gi|254781066|r 335 GANNINEVIWTPFSQS 350 (355)
Q Consensus 335 g~~~Irdvi~FP~~r~ 350 (355)
T Consensus 314 g~~nIRdvi~FP~~r~ 329 (329)
T cd00775 314 DSNSIRDVILFPAMRP 329 (329)
T ss_pred CCCHHHHCCCCCCCCC
T ss_conf 8981875137999897