HHsearch alignment for GI: 254781066 and conserved domain: cd00776
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=0 Score=569.96 Aligned_cols=289 Identities=22% Similarity=0.324 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 48999999999999999999879889847821056898544541241024788678320000285899998987446889
Q gi|254781066|r 18 RRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKI 97 (355)
Q Consensus 18 ~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~rv 97 (355)
T Consensus 20 ~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~-eg~a~~f~~~-----~~~~~~yL~~Spel~-Kqlli~G~~rV 92 (322)
T cd00776 20 VQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT-EGGAELFKVS-----YFGKPAYLAQSPQLY-KEMLIAALERV 92 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-CCCCCCCCCC-----CCCCCEEECCCHHHH-HHHHHCCCCCE
T ss_conf 9999999999999999999988999997984007889-8654667621-----058760015485889-99975342443
Q ss_pred HHHHHHHCCCCCC-CCCCCCEEEECEEECCC-CHHHHHHHHHHHHHHHHHHHCCCEEC-------CCCCCCCCCCCCCCC
Q ss_conf 9988642456777-54484300200011577-65787775578887766641883000-------223433246773207
Q gi|254781066|r 98 FCFAHAWRNGEQG-CLHQPEFTMLEWYRAHE-SYEQLMKDCMNIIRCAAEVANQKIFS-------FQNVNCNPFSEPEYI 168 (355)
Q Consensus 98 yqig~~FRaE~~~-~rHlpEFtmLE~e~af~-d~~dlm~~~E~li~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i 168 (355)
T Consensus 93 fei~~~FR~E~~~t~rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (322)
T cd00776 93 YEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLNRELLKPLEPFPRI 172 (322)
T ss_pred EEECCEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88726140799987534788876525552332899999999999999999998652678899875121100247996424
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88886566608765323455562327999999997688778765347898766430036223767544325768888641
Q gi|254781066|r 169 TVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESAL 248 (355)
Q Consensus 169 ~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~~~pl 248 (355)
T Consensus 173 ~~~ea~~~------------------------l~~~~~~--~~~~~~~dl~~~~e~~l~~~~~-~~p~fv~d~P~~~~pf 225 (322)
T cd00776 173 TYDEAIEL------------------------LREKGVE--EEVKWGEDLSTEHERLLGEIVK-GDPVFVTDYPKEIKPF 225 (322)
T ss_pred CHHHHHHH------------------------HHHCCCC--CCCCCCCCCCHHHHHHHHHHHC-CCCEEEECCHHHCCCC
T ss_conf 19999999------------------------9856996--6877666337699999999965-8988997974421976
Q ss_pred -CCCCCCCCCCCCCCEEEECCE-ECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCEEECC
Q ss_conf -367877836330220223671-225640210699999999999999997288853010189999861-88963245315
Q gi|254781066|r 249 -ANIYPADPRFTKRFELYACNI-ELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMG 325 (355)
Q Consensus 249 -ak~~~~~~~va~rfdl~i~G~-El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~-G~PPhgG~glG 325 (355)
T Consensus 226 y~~~~~~~~~~~~rfel~~~G~~El~~g~~r~~d~~~l~~r~~~~------g~~~~--~~~~yl~al~~G~PP~gG~glG 297 (322)
T cd00776 226 YMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEH------GLDPE--SFEWYLDLRKYGMPPHGGFGLG 297 (322)
T ss_pred CCCCCCCCHHHHHHHHEECCCCEEECCHHHHHCCHHHHHHHHHHC------CCCHH--HHHHHHHHHHCCCCCCCEEEEH
T ss_conf 588668854554542001289278677666408999999999985------99978--9999999976699997245438
Q ss_pred HHHHHHHHHCCCCHHHHCCCCCC
Q ss_conf 99998998155971311158564
Q gi|254781066|r 326 FDRLVMLVTGANNINEVIWTPFS 348 (355)
Q Consensus 326 idRLvm~l~g~~~Irdvi~FP~~ 348 (355)
T Consensus 298 iDRLvmll~g~~~Irdvi~FPr~ 320 (322)
T cd00776 298 LERLVMWLLGLDNIREAILFPRD 320 (322)
T ss_pred HHHHHHHHCCCCCHHHEECCCCC
T ss_conf 99999998299727605138999