HHsearch alignment for GI: 254781066 and conserved domain: cd00777
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=0 Score=509.74 Aligned_cols=276 Identities=25% Similarity=0.315 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCEECC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999879889847821056-898544541241024788678320000285899998987446889998
Q gi|254781066|r 22 LLKRNMIQSSLREYFVENQFIEIDSMSLQYS-PGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCF 100 (355)
Q Consensus 22 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~rvyqi 100 (355)
T Consensus 1 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg---a~~f~~~~~--~~~~~~~~L~~Spel~~k~l~~~g~~rvf~i 75 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEG---ARDFLVPSR--LHPGKFYALPQSPQLFKQLLMVSGFDRYFQI 75 (280)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC---CCCCEECCC--CCCCCCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 96699999999999998898998798106878776---766442441--6887603688798999999985687775798
Q ss_pred HHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 86424567775448430020001157765787775578887766641883000223433246773207888865666087
Q gi|254781066|r 101 AHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANI 180 (355)
Q Consensus 101 g~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~ 180 (355)
T Consensus 76 ~~~FR~E~~~~~h~~EFtmLE~e~~~~~~~d~m~~~E~li~~i~~~~~~---------~~~~~~~~rity~ea~~~~-g~ 145 (280)
T cd00777 76 ARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLG---------VELTTPFPRMTYAEAMERY-GF 145 (280)
T ss_pred ECEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC---------CCCCCCCCEEEHHHHHHHH-CC
T ss_conf 4517478888766347762344226888999999999999999999819---------8779997577688999986-89
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHHHHHH-CCCCCCCCCCC
Q ss_conf 65323455562327999999997688778765347898766430036223767544325768888641-36787783633
Q gi|254781066|r 181 DLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESAL-ANIYPADPRFT 259 (355)
Q Consensus 181 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~~~pl-ak~~~~~~~va 259 (355)
T Consensus 146 ~~~~~~d~~~---------------------~~~~~~~~----~~~~~----~~p-f~--~p~~~~~~~~~~~p-~~~~~ 192 (280)
T cd00777 146 KFLWIVDFPL---------------------FEWDEEEG----RLVSA----HHP-FT--APKEEDLDLLEKDP-EDARA 192 (280)
T ss_pred CCCCCCCCCC---------------------CCCCHHHC----CCCCC----CCC-CC--CCCHHHHHHHHCCC-HHHHH
T ss_conf 7331135753---------------------34624425----52222----077-34--78244167763380-24567
Q ss_pred CCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHC-CCCCCCEEECCHHHHHHHHHCCC
Q ss_conf 0220223671225640210699999999999999997288853-010189999861-88963245315999989981559
Q gi|254781066|r 260 KRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNET-YPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVTGAN 337 (355)
Q Consensus 260 ~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~-~~~D~~fl~al~-G~PPhgG~glGidRLvm~l~g~~ 337 (355)
T Consensus 193 ~~fdl~~~G~El~nG~~r~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~l~a~~~G~pP~~G~glGiDRLvm~l~g~~ 267 (280)
T cd00777 193 QAYDLVLNGVELGGGSIRIHDPDIQEKVFEILG-----LSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSE 267 (280)
T ss_pred HHHCCCCCCEEECCCCCEECCHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCC
T ss_conf 774135686442353102279999999999859-----896677888999999976699987435158999999992898
Q ss_pred CHHHHCCCCCCCC
Q ss_conf 7131115856487
Q gi|254781066|r 338 NINEVIWTPFSQS 350 (355)
Q Consensus 338 ~Irdvi~FP~~r~ 350 (355)
T Consensus 268 ~Irdvi~FPR~~n 280 (280)
T cd00777 268 SIRDVIAFPKTQN 280 (280)
T ss_pred CHHEEECCCCCCC
T ss_conf 2870734799998