HHsearch alignment for GI: 254781066 and conserved domain: cd00778
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.63 E-value=3.6e-07 Score=61.87 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=82.9
Q ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECC-----CCCCCCCCC-----EEEECCCCCCCC
Q ss_conf 8987478831261548999999999999999999879889847821056-----898544541-----241024788678
Q gi|254781066|r 4 IPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYS-----PGNETHIRA-----FSTELIIQDHIR 73 (355)
Q Consensus 4 ~p~~~~~~~~~~~r~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-----~~g~~~~~~-----f~t~~~~~~~~~ 73 (355)
T Consensus 21 v~G~~~~lP~-------G~~i~~~l~~~~r~~~~~~G~~ev~~P~l~~~~~~~k~sg--h~~~y~~emf~v~~~g~~~~d 91 (261)
T cd00778 21 VKGCMVFRPY-------GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKE--HIEGFAPEVAWVTHGGLEELE 91 (261)
T ss_pred CCCEEEECCC-------HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC--HHHCCCCCCEEEECCCCCCCC
T ss_conf 9830888632-------8999999999999999986996998833278899997428--143057653355216852013
Q ss_pred CCCCCCCCH-----HHHHHHHHHHHHH---HHHHHHHHHCCCCCCC---CCCCCEEEECEEECCCCHHHHHHHHHHHHHH
Q ss_conf 320000285-----8999989874468---8999886424567775---4484300200011577657877755788877
Q gi|254781066|r 74 KPLYLQTSP-----EFSCKKLLAAGEE---KIFCFAHAWRNGEQGC---LHQPEFTMLEWYRAHESYEQLMKDCMNIIRC 142 (355)
Q Consensus 74 ~~~yL~~SP-----ql~lK~ll~~G~~---rvyqig~~FRaE~~~~---rHlpEFtmLE~e~af~d~~dlm~~~E~li~~ 142 (355)
T Consensus 92 ~~y~LkPmne~~~~~i~~-~~~~SYRdLPlrl~q~g~~~R~E~s~~~gL~RvReF~~dDahs~~~t~eq~~~e~~~~~~~ 170 (261)
T cd00778 92 EPLALRPTSETAIYPMFS-KWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDL 170 (261)
T ss_pred CCCCCCCCCHHHHHHHHH-HHHCCCCCCCHHHHHCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 560347888699999997-3505402278255530422437788887653254252342336558999999999999999
Q ss_pred H
Q ss_conf 6
Q gi|254781066|r 143 A 143 (355)
Q Consensus 143 ~ 143 (355)
T Consensus 171 y 171 (261)
T cd00778 171 Y 171 (261)
T ss_pred H
T ss_conf 9