PSIBLAST alignment of GI: 254781066 and protein with PDB id: 1lyl

>gi|1311301|pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504
>gi|1311303|pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504
 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 166/367 (45%), Gaps = 26/367 (7%)

Query: 1   MHQIPSQPWW--NRDFHYRRR-----------PFLLKRNMIQSSLREYFVENQFIEIDSM 47
           +  +P +     +++  YR+R              + R+ I +++R++ V   F+E+++ 
Sbjct: 149 LRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETP 208

Query: 48  SLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNG 107
            +Q  PG  +  R F T     + +   +YL+ +PE   K+L+  G E++F     +RN 
Sbjct: 209 MMQVIPGGAS-ARPFITH---HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE 264

Query: 108 EQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAE-VANQKIFSFQNVNCNPFSEPE 166
                H PEFTM+E Y A+  Y  L++   ++ R  A+ V      ++     +     E
Sbjct: 265 GISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFE 324

Query: 167 YITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKI 226
            +T+ EA  +Y         D  D  +       A+  GI V        I + I  E  
Sbjct: 325 KLTMREAIKKY-----RPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVA 379

Query: 227 EPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRH 286
           E +  +   T +  YPA  S LA     +P  T RFE +    E+ N   EL D  +Q  
Sbjct: 380 EAH--LIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAE 437

Query: 287 RFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVTGANNINEVIWT 345
           RF++++  K    +E    DED++  L   +P ++G+ +G DR++ML T ++ I +VI  
Sbjct: 438 RFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILF 497

Query: 346 PFSQSNQ 352
           P  +  +
Sbjct: 498 PAMRPQK 504