RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase
protein [Candidatus Liberibacter asiaticus str. psy62]
(355 letters)
>gnl|CDD|161889 TIGR00462, genX, lysyl-tRNA synthetase-like protein GenX. Many
Gram-negative bacteria have a protein closely homologous
to the C-terminal region of lysyl-tRNA synthetase
(LysS). Multiple sequence alignment of these proteins
with the homologous regions of collected LysS proteins
shows that these proteins form a distinct set rather
than just similar truncations of LysS. The protein is
termed GenX after its designation in E. coli.
Interestingly, genX often is located near a homolog of
lysine-2,3-aminomutase. Its function is unknown.
Length = 304
Score = 391 bits (1007), Expect = e-109
Identities = 128/325 (39%), Positives = 181/325 (55%), Gaps = 22/325 (6%)
Query: 22 LLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTS 81
L R + +++R +F E +E+++ L +P + H+ AF+TE + D +PLYLQTS
Sbjct: 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTS 60
Query: 82 PEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIR 141
PE++ K+LLAAG IF +RNGE+G H PEFTMLEWYR Y LM + +++
Sbjct: 61 PEYAMKRLLAAGSGPIFQICKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQ 120
Query: 142 CAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQA 201
+PF+ E ++ EAF RYA ID T L A
Sbjct: 121 ELLG--------------DPFAPWERLSYQEAFLRYAGIDPLTA-------SLDELAAAA 159
Query: 202 QQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADPRFTKR 261
G+R + +D D+ + EK+EP+LG T L YPA ++ALA I P DPR +R
Sbjct: 160 AAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAER 219
Query: 262 FELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTE-MPQSS 320
FELY +EL N EL D EQR RFE + E+K + YP+DE FLA L +P+ S
Sbjct: 220 FELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECS 279
Query: 321 GIAMGFDRLVMLVTGANNINEVIWT 345
G+A+G DRL+ML GA++I++V+
Sbjct: 280 GVALGVDRLLMLALGADSIDDVLAF 304
>gnl|CDD|181791 PRK09350, PRK09350, poxB regulator PoxA; Provisional.
Length = 306
Score = 240 bits (616), Expect = 3e-64
Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 27/327 (8%)
Query: 20 PFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIR-KPLYL 78
P LLKR I + +R +F + +E+++ L + + H+ F T + + K L+L
Sbjct: 3 PNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWL 62
Query: 79 QTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMN 138
TSPE+ K+LLAAG IF ++RN E G H PEFTMLEWYR H +LM + +
Sbjct: 63 MTSPEYHMKRLLAAGSGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDD 122
Query: 139 IIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLY 198
++ Q++ +C P E ++ +AF RY ID P D+ L
Sbjct: 123 LL--------QQVL-----DCEPA---ESLSYQQAFLRYLGID-------PLSADKTQLR 159
Query: 199 LQAQQAGIRVAHD--DTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADP 256
A + G+ D + + + +EPN+G T + +PA ++ALA I D
Sbjct: 160 EVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDH 219
Query: 257 RFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTE- 315
R +RFE+Y IEL N EL D EQR RFE++ +++ PIDE+ +A L
Sbjct: 220 RVAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAG 279
Query: 316 MPQSSGIAMGFDRLVMLVTGANNINEV 342
+P SG+A+G DRL+ML GA +I+EV
Sbjct: 280 LPDCSGVALGVDRLIMLALGAESISEV 306
>gnl|CDD|179044 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
Length = 491
Score = 180 bits (460), Expect = 4e-46
Identities = 110/333 (33%), Positives = 165/333 (49%), Gaps = 35/333 (10%)
Query: 23 LKRNMIQSSLREYFVENQFIEIDSMSLQYSPGN------ETHIRAFSTELIIQDHIRKPL 76
KR+ I S++R + F+E+++ LQ G TH A +L
Sbjct: 173 RKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDL---------- 222
Query: 77 YLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGC--LHQPEFTMLEWYRAHESYEQLMK 134
YL+ +PE K+L+ G E+++ +RN +G H PEFTMLE+Y+A+ Y +M
Sbjct: 223 YLRIAPELYLKRLIVGGFERVYEIGRNFRN--EGIDTRHNPEFTMLEFYQAYADYNDMMD 280
Query: 135 DCMNIIRCAA-EVANQKIFSFQNVNCNPFSEP-EYITVAEAFARYANIDLGTTLDNPDQP 192
+IR A V ++Q + F P + +T+ +A Y +D D
Sbjct: 281 LTEELIRHLAQAVLGTTKVTYQGTEID-FGPPFKRLTMVDAIKEYTGVDF------DDMT 333
Query: 193 DRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIY 252
D L A++ GI V + + + E +EP L I I D YP S LA +
Sbjct: 334 DEEARAL-AKELGIEVEKSWGLGKLINELFEEFVEPKL-IQPTFITD-YPVEISPLAKRH 390
Query: 253 PADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLAC 312
DP T+RFEL+ E+ NA EL DPI+QR RFE +++ K+ +E +DEDFL
Sbjct: 391 REDPGLTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRA 450
Query: 313 LTE--MPQSSGIAMGFDRLVMLVTGANNINEVI 343
L E MP + G+ +G DRLVML+T + +I +VI
Sbjct: 451 L-EYGMPPTGGLGIGIDRLVMLLTDSPSIRDVI 482
>gnl|CDD|129590 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and
non-spirochete bacterial. This model represents the
lysyl-tRNA synthetases that are class II amino-acyl tRNA
synthetases. It includes all eukaryotic and most
bacterial examples of the enzyme, but not archaeal or
spirochete forms.
Length = 496
Score = 170 bits (433), Expect = 5e-43
Identities = 113/330 (34%), Positives = 177/330 (53%), Gaps = 16/330 (4%)
Query: 22 LLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTS 81
L R+ I ++R + + FIE+++ LQ PG R F T + + LYL+ +
Sbjct: 172 FLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGAN-ARPFITH---HNALDMDLYLRIA 227
Query: 82 PEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIR 141
PE K+L+ G EK++ +RN H PEFTM+E+Y+A+ YE LM N+ +
Sbjct: 228 PELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFK 287
Query: 142 CAA-EVANQKIFSFQNVNCNPFSEP-EYITVAEAFARYANIDLGTTLDNPDQPDRHLLYL 199
A E+ ++ + + F +P + IT+ EA +Y D+ T +D D D
Sbjct: 288 FLAQELLGTTKITYGELEID-FKKPFKRITMVEAIKKY---DMETGIDFDDLKDFETAKA 343
Query: 200 QAQQAGIRVAHDDTWS--DIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADPR 257
A++ GI VA + + + I + + + +E L I T + YPA S LA P++P
Sbjct: 344 LAKKIGIEVA-EKSLTLGHILNELFEQFLEHTL-IQP-TFITHYPAEISPLAKRNPSNPE 400
Query: 258 FTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTE-M 316
FT RFEL+ E+ NA EL DP++QR RFE+++ EK+ +E +DEDF+ L M
Sbjct: 401 FTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGM 460
Query: 317 PQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
P + G+ +G DRLVML+T + +I +VI P
Sbjct: 461 PPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490
>gnl|CDD|179519 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 148 bits (376), Expect = 2e-36
Identities = 107/357 (29%), Positives = 153/357 (42%), Gaps = 62/357 (17%)
Query: 19 RPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGN------ETHIRAFSTELIIQDHI 72
R L R+ + ++RE V F+E+++ LQ G THI A+
Sbjct: 767 RDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDM-------- 818
Query: 73 RKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQL 132
LYL+ +PE K+L G E++F +RN H PEFT+LE Y+AH Y+ +
Sbjct: 819 --DLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTM 876
Query: 133 MKDCMNIIRCAAEVANQKIFSF---QNVNCNP--FSEP-EYITVAEAFARYANIDLGTTL 186
+I+ AA+ A+ + P S P +TV +A + LG +
Sbjct: 877 RDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVDISGPWPVVTVHDAVSE----ALGEEI 932
Query: 187 DNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRI---LIEK--IEPNLGINCCTILDRY 241
D PD P L L AGI D + + L+E P T +
Sbjct: 933 D-PDTPLAELRKL-CDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFP-------TFYTDF 983
Query: 242 PAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEK----------E 291
P S L + +DP +R++L A +EL A EL DP+EQR R + E
Sbjct: 984 PTSVSPLTRPHRSDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPE 1043
Query: 292 MQEKKKIYNETYPIDEDFLACL-TEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPF 347
E +DEDFL L MP + G+ MG DRLVML+TG +I E + P
Sbjct: 1044 AME----------LDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPL 1089
>gnl|CDD|178118 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 142 bits (360), Expect = 1e-34
Identities = 88/326 (26%), Positives = 152/326 (46%), Gaps = 12/326 (3%)
Query: 24 KRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPE 83
R I S +R + + F+E+++ L G R F T + + LYL+ + E
Sbjct: 231 TRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAA-ARPFVTH---HNDLNMDLYLRIATE 286
Query: 84 FSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNII-RC 142
K+L+ G E+++ +RN H PEFT E+Y+A+ Y +M+ ++
Sbjct: 287 LHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGM 346
Query: 143 AAEVANQKIFSFQNVNCNPFSEP-EYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQA 201
E+ + + + F+ P I++ ID L + + L
Sbjct: 347 VKELTGSYKIKYHGIEID-FTPPFRRISMISLVEEATGIDFPADLKSDEA--NAYLIAAC 403
Query: 202 QQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADPRFTKR 261
++ ++ T + + + E +E L + +LD +P S LA + + P T+R
Sbjct: 404 EKFDVKCPPPQTTGRLLNELFEEFLEETL-VQPTFVLD-HPVEMSPLAKPHRSKPGLTER 461
Query: 262 FELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTE-MPQSS 320
FEL+ EL NA EL DP++QR RFE+++++ +E +DEDF L +P +
Sbjct: 462 FELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTG 521
Query: 321 GIAMGFDRLVMLVTGANNINEVIWTP 346
G +G DRLVML+T + +I +VI P
Sbjct: 522 GWGLGIDRLVMLLTDSASIRDVIAFP 547
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 130 bits (327), Expect = 7e-31
Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 33/342 (9%)
Query: 24 KRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPE 83
KR+++ +LR+YF E F+E+++ L ++ + + ++F T + L+L+ +PE
Sbjct: 235 KRHVMLQALRDYFNERNFVEVETPVL-HTVASGANAKSFVTH---HNANAMDLFLRVAPE 290
Query: 84 FSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCA 143
K+ + G E+I+ +RN + H PEFT E+Y A+ +YE LM +I R
Sbjct: 291 LHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQL 350
Query: 144 AEVANQKIFSFQNVNC-NPFSEPEYITVAEAFARYANID-----LGTTLDNPDQPD--RH 195
A N + + N P + + + F R + D G P++ + +
Sbjct: 351 AMRVNGT--TVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKG 408
Query: 196 LLYLQA-------QQAGIRVAHD--DTWSDIFSRILIEKIEPNLGINCCTILDRYPAPES 246
+ Y+ +R A + D F I +EP T + +P S
Sbjct: 409 IAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFF--ITDRVVEP-------TFVMDHPLFMS 459
Query: 247 ALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPID 306
LA + P +RFEL+ IE CNA EL DP EQ HRF++++ +++ E P+D
Sbjct: 460 PLAKEQVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLD 519
Query: 307 EDFLACL-TEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPF 347
E FL L +P ++G MG DR +ML+T ++NI + I P
Sbjct: 520 ETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPL 561
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 126 bits (317), Expect = 1e-29
Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 14/331 (4%)
Query: 18 RRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLY 77
R+ F++ R+ I +++R++ V F+E+++ +Q PG + R F T + + +Y
Sbjct: 181 RQTFVV-RSKILAAIRQFMVARGFMEVETPMMQVIPGGAS-ARPFITH---HNALDLDMY 235
Query: 78 LQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCM 137
L+ +PE K+L+ G E++F +RN H PEFTM+E Y A+ Y L++
Sbjct: 236 LRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTE 295
Query: 138 NIIRCAAEVANQKIFSFQNVNCNPFSEP-EYITVAEAFARYANIDLGTTLDNPDQPDRHL 196
++ R A+ + F +P E +T+ EA +Y LDN D
Sbjct: 296 SLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKA-- 353
Query: 197 LYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADP 256
A+ GI V I + I E E +L T + YPA S LA +P
Sbjct: 354 ---LAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQP--TFITEYPAEVSPLARRNDVNP 408
Query: 257 RFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTE- 315
T RFE + E+ N EL D +Q RF++++ K +E DED++ L
Sbjct: 409 EITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYG 468
Query: 316 MPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
+P ++G+ +G DR++ML T ++ I +VI P
Sbjct: 469 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 94.3 bits (234), Expect = 4e-20
Identities = 82/337 (24%), Positives = 153/337 (45%), Gaps = 16/337 (4%)
Query: 19 RPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYL 78
R + R I + LR + + FIE+++ ++ G + R F T + + LYL
Sbjct: 250 RSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGG-ANARPFITH---HNDLDLDLYL 305
Query: 79 QTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMK---D 135
+ + E K L+ G +K++ +RN H PEFT E+Y A+ + L+K D
Sbjct: 306 RIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSED 365
Query: 136 CMNIIRCAAEVANQKIFSFQNVNCNPFS---EPEY--ITVAEAFARYANIDLGTTLDNPD 190
+ + + +++ +P P Y +++ E + N L D+P+
Sbjct: 366 FFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPE 425
Query: 191 QPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALAN 250
++ + ++ + I + + T + + ++ IE N N + +P S LA
Sbjct: 426 TINKMINLIKENK--IEMPNPPTAAKLLDQLASHFIE-NKYPNKPFFIIEHPQIMSPLAK 482
Query: 251 IYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFL 310
+ + P T+R E++ C E+ NA EL DP +Q+ F + ++++K E + D F
Sbjct: 483 YHRSKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFDAAFC 542
Query: 311 ACLTE-MPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
L +P + G+ +G DR+ M +T N I +VI P
Sbjct: 543 TSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
>gnl|CDD|129550 TIGR00458, aspS_arch, aspartyl-tRNA synthetase, archaeal type. In
a multiple sequence alignment of representative
asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic
type aspartyl-tRNA synthetases (aspS_arch), and
bacterial type aspartyl-tRNA synthetases (aspS_bact),
there is a striking similarity between asnS and
aspS_arch in gap pattern and in sequence, and a striking
divergence of aspS_bact. Consequently, a separate model
was built for each of the three groups. This model,
aspS_arch, represents aspartyl-tRNA synthetases from the
eukaryotic cytosol and from the Archaea. In some
species, this enzyme aminoacylates tRNA for both Asp and
Asn; Asp-tRNA(asn) is subsequently transamidated to
Asn-tRNA(asn).
Length = 428
Score = 60.6 bits (147), Expect = 6e-10
Identities = 71/340 (20%), Positives = 127/340 (37%), Gaps = 55/340 (16%)
Query: 18 RRP-----FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHI 72
RRP F ++ +++S +RE+ E FIE+ + L S TEL +
Sbjct: 125 RRPTVQAIFRIRSGVLES-VREFLAEEGFIEVHTPKLVASATEG------GTELFPITYF 177
Query: 73 RKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCL-HQPEFTMLEWYRAHESYEQ 131
+ +L SP+ ++L+AAG E+++ +R E H E T ++ A E +
Sbjct: 178 EREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHD 237
Query: 132 LMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQ 191
+M + V + V E A L L+ P+
Sbjct: 238 VMDILEEL--------------VVRV---------FEDVPERCAHQLET-LEFKLEKPEG 273
Query: 192 PDRHLLYLQAQQ----AGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESA 247
L Y +A + G+ + + S + L E+++ I D
Sbjct: 274 KFVRLTYDEAIEMANAKGVEIGWGEDLSTEAEKALGEEMDGLY-----FITDWPTEIRPF 328
Query: 248 LANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDE 307
+P +K F+L ++E+ + + H E + K + E + +
Sbjct: 329 YTMPDEDNPEISKSFDLMYRDLEISSGAQRIHL-----HDLLVERIKAKGLNPEGF---K 380
Query: 308 DFLACLTE-MPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
D+L + MP +G +G +R VM + G NI E + P
Sbjct: 381 DYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFP 420
>gnl|CDD|179042 PRK00476, aspS, aspartyl-tRNA synthetase; Validated.
Length = 588
Score = 47.8 bits (115), Expect = 5e-06
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 321 GIAMGFDRLVMLVTGANNINEVI 343
GIA G DRLVML+ GA++I +VI
Sbjct: 531 GIAFGLDRLVMLLAGADSIRDVI 553
Score = 28.9 bits (66), Expect = 1.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 16 YR----RRP----FLLKRNMIQSSLREYFVENQFIEI 44
YR RRP L R+ + S++R + +N F+EI
Sbjct: 127 YRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEI 163
>gnl|CDD|179948 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.
Length = 437
Score = 47.1 bits (113), Expect = 7e-06
Identities = 82/343 (23%), Positives = 132/343 (38%), Gaps = 79/343 (23%)
Query: 25 RNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTE----LIIQDHIRKPLYLQT 80
R+ + + RE+ EN F EI ++P I A TE L D+ K YL
Sbjct: 139 RSEVLRAFREFLYENGFTEI------FTP----KIVASGTEGGAELFPIDYFEKEAYLAQ 188
Query: 81 SPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCL-HQPEFTMLEWYRAH-ESYEQLMKDCMN 138
SP+ + ++ AG E++F +R E H E+T ++ + +E +M N
Sbjct: 189 SPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLEN 248
Query: 139 IIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLY 198
++R Y VAE + + LG L P+ P + Y
Sbjct: 249 LLRYM-----------------------YEDVAENCEKELEL-LGIELPVPETPIPRITY 284
Query: 199 LQAQQ----AGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPA---PESALANI 251
+A + G ++ D R+L E ++ G + I D YP+ P +
Sbjct: 285 DEAIEILKSKGNEISWGDDLDTEGERLLGEYVKEEYGSDFYFITD-YPSEKRPFYTMP-- 341
Query: 252 YPADPRFTKRFELYACNIELCNACDELLDPIEQR-HRFEKEMQE-KKKIYN----ETYPI 305
DP +K F+L +E+ + QR HR++ ++ K+K N E Y
Sbjct: 342 DEDDPEISKSFDLLFRGLEITSG--------GQRIHRYDMLVESIKEKGLNPESFEFY-- 391
Query: 306 DEDFLACLTE-----MPQSSGIAMGFDRLVMLVTGANNINEVI 343
E MP G +G +RL M + G NI E +
Sbjct: 392 --------LEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAV 426
>gnl|CDD|129551 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type. In
a multiple sequence alignment of representative
asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic
type aspartyl-tRNA synthetases (aspS_arch), and
bacterial type aspartyl-tRNA synthetases (aspS_bact),
there is a striking similarity between asnS and
aspS_arch in gap pattern and in sequence, and a striking
divergence of aspS_bact. Consequently, a separate model
was built for each of the three groups. This model,
aspS_bact, represents aspartyl-tRNA synthetases from the
Bacteria and from mitochondria. In some species, this
enzyme aminoacylates tRNA for both Asp and Asn;
Asp-tRNA(asn) is subsequently transamidated to
Asn-tRNA(asn). This model generates very low scores for
the archaeal type of aspS and for asnS; scores between
the trusted and noise cutoffs represent fragmentary
sequences.
Length = 583
Score = 44.0 bits (104), Expect = 5e-05
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 288 FEKEMQEKK----KIYNETYPIDEDFLACLTEM--PQSSGIAMGFDRLVMLVTGANNINE 341
+ E+Q+K I E FL + P +G A+G DRL+ML+TG +NI +
Sbjct: 487 HDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRD 546
Query: 342 VIWTPFSQS 350
VI P + +
Sbjct: 547 VIAFPKTTA 555
Score = 42.8 bits (101), Expect = 2e-04
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 42/186 (22%)
Query: 18 RRP----FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFST-----ELII 68
RRP L R+ + ++R + + F+EI ET + ST + ++
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEI-----------ETPMLTKSTPEGARDYLV 178
Query: 69 QDHIRKPLY--LQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAH 126
+ K + L SP+ + L+ +G ++ + A +R+ + QPEFT ++ +
Sbjct: 179 PSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSF 238
Query: 127 ESYEQLMKDCMNIIRCAAEVANQKIFS-FQNVNCN-PFSEPEYITVAEAFARYANIDLGT 184
+ E +M+ E +F + ++ PF +T AEA RY +
Sbjct: 239 MTQEDVME--------LIEKLVSHVFLEVKGIDLKKPFPV---MTYAEAMERYGS----- 282
Query: 185 TLDNPD 190
D PD
Sbjct: 283 --DKPD 286
>gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 43.6 bits (104), Expect = 8e-05
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 319 SSGIAMGFDRLVMLVTGANNINEVIWTPF 347
SG +GF+RLV +TG +NI +VI PF
Sbjct: 415 HSGFGLGFERLVAYITGLDNIRDVI--PF 441
>gnl|CDD|178491 PLN02903, PLN02903, aminoacyl-tRNA ligase.
Length = 652
Score = 41.3 bits (97), Expect = 4e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 317 PQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQ 352
P GIA G DRLVML+ GA +I +VI P + + Q
Sbjct: 590 PPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQ 625
Score = 31.7 bits (72), Expect = 0.33
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 78 LQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCM 137
L SP+ + L+ +G ++ + A +R+ + QPEFT L+ A E ++K
Sbjct: 256 LPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNE 315
Query: 138 NIIRCAAEVANQKIF-SFQNVNC-NPFSEPEYITVAEAFARYANIDLGTTLDNPD 190
++IR ++F + V NPF +T AEA ++Y + D PD
Sbjct: 316 DLIR--------QVFKEIKGVQLPNPFPR---LTYAEAMSKYGS-------DKPD 352
>gnl|CDD|161887 TIGR00457, asnS, asparaginyl-tRNA synthetase. In a multiple
sequence alignment of representative asparaginyl-tRNA
synthetases (asnS), archaeal/eukaryotic type
aspartyl-tRNA synthetases (aspS_arch), and bacterial
type aspartyl-tRNA synthetases (aspS_bact), there is a
striking similarity between asnS and aspS_arch in gap
pattern and in sequence, and a striking divergence of
aspS_bact. Consequently, a separate model was built for
each of the three groups. This model, asnS, represents
asparaginyl-tRNA synthetases from the three domains of
life. Some species lack this enzyme and charge tRNA(asn)
by misacylation with Asp, followed by transamidation of
Asp to Asn.
Length = 453
Score = 40.8 bits (96), Expect = 6e-04
Identities = 70/344 (20%), Positives = 117/344 (34%), Gaps = 59/344 (17%)
Query: 25 RNMIQSSLREYFVENQFIEIDS---MSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTS 81
RN + ++ YF EN F + S E + QD K YL S
Sbjct: 139 RNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVS 198
Query: 82 PEFSCKKLLAAGEEKIFCFAHAWR-NGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNII 140
+ + A K++ F +R H EF M+E A + L++ +I
Sbjct: 199 GQLYLETYALA-LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLI 257
Query: 141 RCAAEVANQKIFSFQNV--NCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLL- 197
+ + + V NC S+ + + + DL L+N +
Sbjct: 258 K----------YIIKAVLENC---SQE-----LKFLEKNFDKDLIKRLENIINNKFARIT 299
Query: 198 YLQA----QQAGIRVAHDDTWSDIFS----RILIEKIEPNLGINCCTILDRYPAPESALA 249
Y A +++ ++D W D R L E+ + YP A
Sbjct: 300 YTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKPP-----VFVTNYPKDIKAFY 354
Query: 250 NIYPADPRFTKRFELYACNI-ELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDED 308
D + +L A I E+ E+ +K K++ +D D
Sbjct: 355 MKLNDDGKTVAAMDLLAPGIGEIIGGS-------EREDDLDKLENRMKEM-----GLDTD 402
Query: 309 FLACLTEMPQ-----SSGIAMGFDRLVMLVTGANNINEVIWTPF 347
L ++ + SG +GF+RL+ +TG NI + I PF
Sbjct: 403 ALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAI--PF 444
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 36.1 bits (83), Expect = 0.013
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 18 RRP----FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQD--- 70
RRP L KR+ I R++ F+EI ET I ST +D
Sbjct: 148 RRPAMQDHLAKRHRIIKCARDFLDSRGFLEI-----------ETPILTKSTPEGARDYLV 196
Query: 71 ----HIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLE 121
H ++ L SP+ + L+ AG E+ F A +R+ + QPEFT L+
Sbjct: 197 PSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLD 251
Score = 29.2 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 317 PQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQS 350
P GIA+G DR+V ++ +I EVI P ++S
Sbjct: 543 PPHGGIALGLDRVVSMILQTPSIREVIAFPKNRS 576
>gnl|CDD|185610 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional.
Length = 586
Score = 35.8 bits (82), Expect = 0.017
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 320 SGIAMGFDRLVMLVTGANNINEVIWTPF 347
+G +GF+RL+MLVTG +NI + I PF
Sbjct: 552 AGFGLGFERLIMLVTGVDNIKDTI--PF 577
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 32.3 bits (73), Expect = 0.18
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 320 SGIAMGFDRLVMLVTGANNINEVIWTPF 347
+G +GF+RLV TG +NI + I PF
Sbjct: 531 AGFGLGFERLVQFATGIDNIRDAI--PF 556
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 31.1 bits (70), Expect = 0.47
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 321 GIAMGFDRLVMLVTGANNINEVIWTPF 347
G +GF+R+++ TG +NI +VI PF
Sbjct: 539 GFGLGFERMILFATGIDNIRDVI--PF 563
>gnl|CDD|178442 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 31.2 bits (71), Expect = 0.47
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 237 ILDRYPAPESALANIY----PADPRFTKRFELYACNIELCNACDELLDP--IEQRHRFEK 290
IL RYP A+ Y P DP+++ F+++ E+ + + DP +E+R E
Sbjct: 419 ILHRYP---LAVRPFYTMPCPDDPKYSNSFDVFIRGEEIISGAQRVHDPELLEKRAE-EC 474
Query: 291 EMQEKKKIYNETYPIDEDFLACLTEMPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
+ + K I TY ID + P G +G +R+VML G NNI + P
Sbjct: 475 GI-DVKTI--STY-ID----SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFP 522
>gnl|CDD|178147 PLN02532, PLN02532, asparagine-tRNA synthetase.
Length = 633
Score = 31.0 bits (70), Expect = 0.47
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 320 SGIAMGFDRLVMLVTGANNINEVIWTPFSQS 350
SG ++GF+ +V+ TG ++ + I PF +S
Sbjct: 599 SGFSLGFELMVLFATGLPDVRDAI--PFPRS 627
>gnl|CDD|129752 TIGR00669, asnA, aspartate--ammonia ligase, AsnA-type. The fact
that the protein from the H. influenzae is more than 70
% identical to that from the spirochete Treponema
pallidum, but less than 65 % identical to that from the
closely related E. coli, strongly suggests lateral
transfer.
Length = 330
Score = 29.9 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 306 DEDFLAC-------LTEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQEEI 355
DED L E+PQ+ G +G RL ML+ +I EV + + + +EE
Sbjct: 270 DEDRLELEWHQDLLNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQASVWPAAVREEF 326
>gnl|CDD|148143 pfam06353, DUF1062, Protein of unknown function (DUF1062). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 142
Score = 28.8 bits (65), Expect = 2.0
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 211 DDTW-SDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADPRFTKR 261
D TW IF R + I P L L+ + + LA Y D +R
Sbjct: 20 DYTWNITIFERRNVRSINPEL-------LEALHSNDPGLARAYAFDLAVLRR 64
>gnl|CDD|129023 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 28.8 bits (65), Expect = 2.4
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 236 TILDRY-PAPESALANIYPADPRFTKRFELYACNIELCN----ACDELLDPIEQRHRFEK 290
T R+ PAP +L I D + C + L +C EL I + K
Sbjct: 28 TTKRRHTPAPAISLNRISEEDCSLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFK 87
Query: 291 EMQEKKKIYNETYPIDEDFLACLTEMPQSS 320
E++E + P+ +++ + ++
Sbjct: 88 EIEE--ETLINNPPLFKEYFSASPDVKLLM 115
>gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff.
Length = 397
Score = 28.6 bits (65), Expect = 2.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 321 GIAMGFDRLVMLVTGANNINEV 342
G A+G +RL++L+
Sbjct: 298 GFAIGIERLLLLLEELGLEPPE 319
>gnl|CDD|180575 PRK06462, PRK06462, asparagine synthetase A; Reviewed.
Length = 335
Score = 28.4 bits (64), Expect = 2.7
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 19/124 (15%)
Query: 28 IQSS----LREYFVENQFIEIDS--MSLQYSPGNETHIRAFSTE-LIIQDHIRKPLYLQT 80
+QSS RE+ F+E+ +S P + + I D YL
Sbjct: 32 VQSSILRYTREFLDGRGFVEVLPPIISPSTDPLM--GLGSDLPVKQISIDFYGVEYYLAD 89
Query: 81 SPEFSCKKLLAAGEEKIFCFAHAWRNGEQ----GCLHQPEFTMLEWYRAHESYEQLMKDC 136
S K+L KIF + +R E H EFT L+ E + +
Sbjct: 90 SMILH-KQLALRMLGKIFYLSPNFR-LEPVDKDTGRHLYEFTQLDI----EIEGADLDEV 143
Query: 137 MNII 140
M++I
Sbjct: 144 MDLI 147
>gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 28.3 bits (64), Expect = 2.9
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 252 YPADPRFTKRFELYACNI-----ELCNACDEL---LDPIEQRHRFEKEMQEKKKIYNETY 303
+ + R R +Y NI L +A +EL + E ++ K
Sbjct: 49 FSQEERREYRPLIY-SNILESMKALVDAMEELNIPFEDPESILDIRIITEQFNKTDETEN 107
Query: 304 PIDEDFLACLTEMPQSSGIAMGFDR 328
+ ++ + + + GI + R
Sbjct: 108 VLPKEIAKAIKALWKDEGIQECYRR 132
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional.
Length = 550
Score = 27.6 bits (61), Expect = 5.2
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 237 ILDRYPAPESALANI-YPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEK 295
I DR+P+ + D RFT ++++ E+ + + DP + +
Sbjct: 439 ISDRFPSSARPFYTMECKDDERFTNSYDMFIRGEEISSGAQRIHDP-------DLLLARA 491
Query: 296 KKIYNETYPIDEDFLACLTEMPQSSGIAMGFDRLVMLVTGANNI 339
K + + PI E + G +G +R+VML G +N+
Sbjct: 492 KMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNV 535
>gnl|CDD|149714 pfam08740, BCS1_N, BCS1 N terminal. This domain is found at the
N terminal of the mitochondrial ATPase BSC1. It encodes
the import and intramitochondrial sorting for the
protein.
Length = 181
Score = 26.9 bits (60), Expect = 7.6
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 1 MHQIPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHI 59
+ + QP F R R + VE + ++ PG TH
Sbjct: 42 LEWLSQQP-----FAQRSRRLVASTGSNSRRDSHLSVETSSAQEKKAPFRFVPGFGTHW 95
>gnl|CDD|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha
subunit. This tetrameric form of glycyl-tRNA synthetase
(2 alpha, 2 beta) is found in the majority of completed
eubacterial genomes, with the two genes fused in a few
species. A substantially different homodimeric form (not
recognized by this model) replaces this form in the
Archaea, animals, yeasts, and some eubacteria.
Length = 293
Score = 26.7 bits (59), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 317 PQSSGIAMGFDRLVMLVTGANNINEVIWT 345
P S I G +RL M + G N+ ++ W+
Sbjct: 152 PVSVEITYGLERLAMYIQGVENVYDLEWS 180
>gnl|CDD|179450 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase;
Provisional.
Length = 347
Score = 26.8 bits (60), Expect = 9.8
Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 30/122 (24%)
Query: 175 ARYANIDLGTTLDNPDQPDRHLLY--LQA-----QQAGIRVAHDDTWSDIFSRILIEKIE 227
AR D GT L +P + R L + A Q+A +RV + + ++ +
Sbjct: 62 ARDTPTDPGTGLSHPQEEQRSTLEQVVSANAARVQEA-LRVLEE------YGKL----YD 110
Query: 228 PNLGINCCTILDRYP--APESALANIYPADPRFTKRFELYACNIELC---NACDELLDPI 282
P L I RY ES L N A +R L L + + LL+ +
Sbjct: 111 PELAAAAKQI--RYELYTLESELLN---ASLGKKRRQRLKDAR--LYLITSPSENLLEVV 163
Query: 283 EQ 284
E
Sbjct: 164 EA 165
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,041,538
Number of extensions: 389480
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 53
Length of query: 355
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 261
Effective length of database: 3,963,321
Effective search space: 1034426781
Effective search space used: 1034426781
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)