RPSBLAST alignment of GI: 254781066 and protein with PDBid: 1nnh

>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Length = 294

 Score =  110 bits (277), Expect = 4e-25
 Identities = 46/331 (13%), Positives = 85/331 (25%), Gaps = 66/331 (19%)

Query: 19  RPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFS-TELIIQDHIRKPLY 77
            P L  +  I   + ++FV+  F  +  + +           A    E    +     + 
Sbjct: 12  SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMR 71

Query: 78  LQTSPEFSCKKLLAAGEEKIFCFAHAWRN---GEQGCLHQPEFTMLEWYRAHESYEQLMK 134
           L  S     +  +A G +KIF  +   R     +    H  EFT L++       E +M+
Sbjct: 72  LTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMR 131

Query: 135 DCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDR 194
               ++         K   +           E    +E                      
Sbjct: 132 LIERLVYGLFR----KAEEWTGREFPKTKRFEVFEYSE---------------------- 165

Query: 195 HLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPA 254
                                    +   E  EP   IN                     
Sbjct: 166 ----------------VLEEFGSDEKASQEMEEPFWIINIPREFYDREVD---------- 199

Query: 255 DPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT 314
                    L     E+ +  +   +  +   +  K    +             +L    
Sbjct: 200 GFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSF--------RPYLEIAK 251

Query: 315 --EMPQSSGIAMGFDRLVMLVTGANNINEVI 343
             ++  S+G  +G +RLV  + GA +I EV 
Sbjct: 252 AGKLKPSAGAGIGVERLVRFIVGAKHIAEVQ 282