HHsearch alignment for GI: 254781067 and conserved domain: COG1499

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis].
Probab=96.73  E-value=0.024  Score=35.15  Aligned_cols=104  Identities=25%  Similarity=0.424  Sum_probs=76.5

Q ss_pred             HHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEE--EEE--ECCCEEEEEEEECCEE
Q ss_conf             321677589988937999998753688876389999998246871001342787200--101--0564057899619889
Q gi|254781067|r    7 SAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVE--RAF--VEDQRFQFLYQDQEGF   82 (189)
Q Consensus         7 n~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve--~~~--ie~~~~qylY~dg~~~   82 (189)
T Consensus       245 p~~~~gDiV~~~~~~~~~v~~~----~~-----~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vvs~~~~~~  315 (355)
T COG1499         245 PEFRPGDIVSVRGRQLVLVRSI----GK-----GIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAVVVSRDPSAI  315 (355)
T ss_pred             CCCCCCCEEEECCCEEEEEEEE----CC-----CEEEEECCCCCCCCCCHHHCCCCCCEEEECCCCCEEEEEEECCCCEE
T ss_conf             8879887899779738999993----68-----44898556587033675450067641552145526899996588803


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEC
Q ss_conf             99946887643211543001332013786156897667774401
Q gi|254781067|r   83 HFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVE  126 (189)
Q Consensus        83 ~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~  126 (189)
T Consensus       316 ~v~d~et~e~~~~~~~-------~~~~g~~v~v~~~~~~~~~~~  352 (355)
T COG1499         316 QVLDPETYEARTVKGP-------SLEEGDEVKVFKVRGRNYVVE  352 (355)
T ss_pred             EEEECCEEEEEECCCC-------CCCCCCEEEEEEECCEEEEEE
T ss_conf             8970553898861688-------778997899999804387610