HHsearch alignment for GI: 254781067 and conserved domain: COG1499
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis].
Probab=96.73 E-value=0.024 Score=35.15 Aligned_cols=104 Identities=25% Similarity=0.424 Sum_probs=76.5
Q ss_pred HHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEE--EEE--ECCCEEEEEEEECCEE
Q ss_conf 321677589988937999998753688876389999998246871001342787200--101--0564057899619889
Q gi|254781067|r 7 SAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVE--RAF--VEDQRFQFLYQDQEGF 82 (189)
Q Consensus 7 n~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve--~~~--ie~~~~qylY~dg~~~ 82 (189)
T Consensus 245 p~~~~gDiV~~~~~~~~~v~~~----~~-----~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vvs~~~~~~ 315 (355)
T COG1499 245 PEFRPGDIVSVRGRQLVLVRSI----GK-----GIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAVVVSRDPSAI 315 (355)
T ss_pred CCCCCCCEEEECCCEEEEEEEE----CC-----CEEEEECCCCCCCCCCHHHCCCCCCEEEECCCCCEEEEEEECCCCEE
T ss_conf 8879887899779738999993----68-----44898556587033675450067641552145526899996588803
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEC
Q ss_conf 99946887643211543001332013786156897667774401
Q gi|254781067|r 83 HFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVE 126 (189)
Q Consensus 83 ~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~ 126 (189)
T Consensus 316 ~v~d~et~e~~~~~~~-------~~~~g~~v~v~~~~~~~~~~~ 352 (355)
T COG1499 316 QVLDPETYEARTVKGP-------SLEEGDEVKVFKVRGRNYVVE 352 (355)
T ss_pred EEEECCEEEEEECCCC-------CCCCCCEEEEEEECCEEEEEE
T ss_conf 8970553898861688-------778997899999804387610