HHsearch alignment for GI: 254781067 and conserved domain: PRK03999
>PRK03999 translation initiation factor IF-5A; Provisional.
Probab=100.00 E-value=1.7e-32 Score=219.86 Aligned_cols=120 Identities=25% Similarity=0.305 Sum_probs=113.2
Q ss_pred CCE--EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE
Q ss_conf 923--6643216775899889379999987536888-7638999999824687100134278720010105640578996
Q gi|254781067|r 1 MVK--VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ 77 (189)
Q Consensus 1 m~~--i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~ 77 (189)
T Consensus 1 m~~~~i~~~dlK~G~~i~idg~pckVve~~~sKpGKHG~Akvr~~~~~i~tG~k~e~~~~~~~kve~p~i~kk~~Q~l~~ 80 (129)
T PRK03999 1 MSKKQVEVGELKEGSYVVIDGEPCRIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVAPVDAKVEVPIIEKRTGQVLSI 80 (129)
T ss_pred CCCCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEECCEEEEEEEEEEEE
T ss_conf 97222678992689999999985999998886499985369999999646797899988798805646698768899995
Q ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE
Q ss_conf 198899994688764321154300133201378615689766777
Q gi|254781067|r 78 DQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA 122 (189)
Q Consensus 78 dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~ 122 (189)
T Consensus 81 ~gd~~~fMD~etyE~~elp~~--~e~~~~l~~G~eV~~~~a~G~~ 123 (129)
T PRK03999 81 MGDTVQLMDLETYETFEVPIP--EELKDKIEPGVEVEYWEAMGRR 123 (129)
T ss_pred CCCEEEEECCCCCEEEEECCC--HHHHHHCCCCCEEEEEEECCEE
T ss_conf 699999975999426770199--8998505399879999828937