HHsearch alignment for GI: 254781067 and conserved domain: cd04463
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=96.01 E-value=0.0077 Score=38.20 Aligned_cols=54 Identities=24% Similarity=0.184 Sum_probs=34.1
Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEE
Q ss_conf 4057899619889999468876432115430013320137861568976677744
Q gi|254781067|r 70 QRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALS 124 (189)
Q Consensus 70 ~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~ 124 (189)
T Consensus 1 ~e~qVLd~q~~~~~~Md~e~~~~~~~p~~~~~~-~E~f~~G~~vlv~~~~Gq~~~ 54 (55)
T cd04463 1 RELQVLDIQGSKPVTMDLETYEVVQVPPPVDQS-FESFEPGEVVLVDTRTGQYVG 54 (55)
T ss_pred CCCEEEECCCCEEEEEEEEEEEEEECCCCCCCC-CCCCCCCEEEEEECCCCCEEC
T ss_conf 950688106872389871213677238985644-223489608999746662743