Query         gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 189
No_of_seqs    126 out of 1788
Neff          6.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:33:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781067.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ueb_A EF-P, TT0860, elongati  99.9 1.7E-23 5.2E-28  164.3   6.9   59  129-187     1-59  (59)
  2 >1yby_A Translation elongation  99.9 7.2E-23 2.1E-27  160.5   6.4   59  129-187     1-59  (59)
  3 >1yby_A Translation elongation  99.8 9.8E-21 2.9E-25  147.4   9.2   65    1-65     29-93  (93)
  4 >1yby_A Translation elongation  99.8 1.1E-20 3.1E-25  147.2   7.1   63   66-128     1-63  (63)
  5 >1ueb_A EF-P, TT0860, elongati  99.8 1.5E-19 4.3E-24  140.2   9.0   63    3-65      1-63  (63)
  6 >1ueb_A EF-P, TT0860, elongati  99.8 2.4E-19 7.2E-24  138.9   7.8   62   66-128     1-62  (62)
  7 >1iz6_A Initiation factor 5A;   98.9 2.1E-08 6.1E-13   71.9   9.5   62    4-65      7-69  (70)
  8 >2eif_A IF-5A, protein (eukary  98.8 2.9E-08 8.6E-13   71.0   9.5   62    4-65     11-73  (74)
  9 >1bkb_A Translation initiation  98.8 3.2E-08 9.4E-13   70.8   9.6   62    4-65      9-71  (71)
 10 >3cpf_A Eukaryotic translation  98.8 2.9E-08 8.6E-13   71.0   9.3   63    4-66      7-70  (70)
 11 >3hks_A EIF-5A-2, eukaryotic t  98.8 4.5E-08 1.3E-12   69.9   9.7   64    3-66     28-92  (92)
 12 >3er0_A Eukaryotic translation  98.8 4.2E-08 1.2E-12   70.0   9.4   63    3-65     30-93  (94)
 13 >1x6o_A Eukaryotic initiation   98.8 4.7E-08 1.4E-12   69.8   9.1   64    3-66     30-94  (94)
 14 >1khi_A HEX1; membrane sealing  98.3 1.3E-06 3.8E-11   61.0   6.0   64    3-71     34-99  (101)
 15 >1bkb_A Translation initiation  97.3 0.00063 1.9E-08   44.4   6.3   57   66-122     1-58  (65)
 16 >1iz6_A Initiation factor 5A;   97.1  0.0013 3.9E-08   42.5   6.3   56   67-122     1-58  (68)
 17 >2eif_A IF-5A, protein (eukary  96.8  0.0028 8.4E-08   40.5   5.6   53   67-122     1-53  (62)
 18 >2q9s_A Fatty acid-binding pro  75.4     6.3 0.00019   20.0   6.9   64   41-104    73-137 (155)
 19 >3cpf_A Eukaryotic translation  73.5     6.4 0.00019   19.9   4.7   59   67-125     1-66  (68)
 20 >1ftp_A Muscle fatty acid bind  53.7      17 0.00049   17.4   5.8   64   40-103    50-114 (133)
 21 >2a0a_A DER F 13; beta barrel,  53.1      17  0.0005   17.3   5.4   64   41-104    49-113 (131)
 22 >1yiv_A Myelin P2 protein; lip  49.3      20 0.00058   17.0   6.8   64   41-104    49-113 (131)
 23 >1tmo_A TMAO reductase, trimet  49.3      11 0.00032   18.5   2.2   20  168-187    70-89  (122)
 24 >1kqf_A FDH-N, formate dehydro  48.9      11 0.00033   18.4   2.2   17  106-122    90-106 (174)
 25 >1g7n_A Adipocyte lipid-bindin  47.7      21 0.00061   16.8   5.9   78    6-102    33-111 (131)
 26 >1ggl_A Protein (cellular reti  47.4      21 0.00062   16.8   5.5   64   40-103    48-114 (134)
 27 >2nya_A Periplasmic nitrate re  47.1     9.4 0.00028   18.9   1.6   15  107-121    52-66  (122)
 28 >1bwy_A Protein (heart fatty a  44.8      23 0.00068   16.5   7.6   65   40-104    48-113 (132)
 29 >1ujx_A Polynucleotide kinase   44.1      19 0.00057   17.0   2.8   84   33-116     9-103 (119)
 30 >1q16_A Respiratory nitrate re  43.9      11 0.00033   18.4   1.6   18  106-123    59-76  (158)
 31 >1ogy_A Periplasmic nitrate re  43.3      15 0.00046   17.6   2.2   16  107-122    52-67  (122)
 32 >2nap_A Protein (periplasmic n  43.1      12 0.00035   18.3   1.6   16  107-122    52-67  (120)
 33 >2iv2_X Formate dehydrogenase   41.9      17 0.00049   17.4   2.2   16  107-122    55-70  (124)
 34 >1eu1_A Dimethyl sulfoxide red  41.8      17 0.00049   17.4   2.2   33   78-122    45-77  (161)
 35 >1g8k_A Arsenite oxidase; moly  41.8      15 0.00044   17.7   1.9   17  106-122    59-75  (145)
 36 >1ti6_A Pyrogallol hydroxytran  41.7      13 0.00038   18.1   1.6   34   77-122    50-83  (159)
 37 >2ki8_A Tungsten formylmethano  41.3      17 0.00051   17.3   2.2   17  106-122    66-82  (133)
 38 >1fdq_A Fatty acid-binding pro  41.0      26 0.00078   16.2   5.7   64   41-104    49-113 (131)
 39 >3er0_A Eukaryotic translation  40.2     9.9 0.00029   18.8   0.8   60   67-126     1-67  (73)
 40 >2e7z_A Acetylene hydratase AH  38.9      20 0.00059   16.9   2.2   17  106-122    56-72  (145)
 41 >3hks_A EIF-5A-2, eukaryotic t  38.9      28 0.00084   16.0   4.4   52   67-118     1-57  (75)
 42 >2ivf_A Ethylbenzene dehydroge  38.6      20  0.0006   16.9   2.2   16  107-122    53-68  (143)
 43 >1h0h_A Formate dehydrogenase   37.7      16 0.00048   17.5   1.6   19  106-124    84-102 (168)
 44 >1vyf_A SM14, 14 kDa fatty aci  37.3      30 0.00089   15.8   6.5   63   40-102    50-114 (135)
 45 >3c0k_A UPF0064 protein YCCW;   35.3      31 0.00093   15.7   2.7   29  159-187    25-53  (71)
 46 >2brf_A Bifunctional polynucle  34.9      33 0.00097   15.6   4.0   58   59-116    38-96  (110)
 47 >2w70_A Biotin carboxylase; li  34.3      20 0.00058   16.9   1.6   26   71-97     99-124 (274)
 48 >1dj7_B Ferredoxin thioredoxin  34.3      19 0.00055   17.1   1.4   29  106-134    26-58  (75)
 49 >1khi_A HEX1; membrane sealing  33.8      34   0.001   15.5   3.0   59   68-126     1-68  (75)
 50 >2as0_A Hypothetical protein P  31.8      35   0.001   15.4   2.5   29  159-187    24-52  (70)
 51 >3i9v_3 NADH-quinone oxidoredu  31.7      23 0.00069   16.5   1.6   34   77-122    31-64  (104)
 52 >2vpz_A Thiosulfate reductase;  30.9      28 0.00084   16.0   1.9   17  106-122    56-72  (161)
 53 >3kt9_A Aprataxin; FHA domain,  29.5      40  0.0012   15.0   3.6   58   59-116    32-90  (102)
 54 >1ifc_A Intestinal fatty acid   28.8      42  0.0012   14.9   7.5   64   41-104    48-114 (132)
 55 >2d6f_A Glutamyl-tRNA(Gln) ami  27.3      42  0.0012   14.9   2.3   22  109-130    18-39  (81)
 56 >1o8v_A Fatty acid binding pro  26.6      46  0.0013   14.7   6.4   46   40-85     50-96  (134)
 57 >1ulz_A Pyruvate carboxylase N  26.0      44  0.0013   14.8   2.2   28   69-96     95-122 (148)
 58 >1ed7_A Chitinase A1, (CHBD-CH  25.8      27 0.00078   16.1   1.0   27    8-34      7-33  (45)
 59 >2b78_A Hypothetical protein S  24.5      45  0.0013   14.7   2.0   22  166-187    28-49  (67)
 60 >1w96_A ACC, acetyl-coenzyme A  24.5      50  0.0015   14.5   2.3   86   11-96     37-144 (185)
 61 >2jpe_A Nuclear inhibitor of p  24.3      50  0.0015   14.4   2.4   55   61-115    69-125 (140)
 62 >2gp4_A 6-phosphogluconate deh  23.4      52  0.0015   14.3   2.2   17  166-182   118-134 (139)
 63 >2dzd_A Pyruvate carboxylase;   23.1      52  0.0015   14.3   2.1   19   70-89     96-114 (118)
 64 >1b56_A Fatty acid binding pro  22.4      55  0.0016   14.2   5.8   63   41-103    52-115 (135)
 65 >1c05_A Ribosomal protein S4 d  22.2      49  0.0014   14.5   1.8   24  156-179     3-27  (83)
 66 >3glk_A Acetyl-COA carboxylase  20.7      59  0.0018   14.0   2.7   74   23-96     35-126 (296)
 67 >3jrx_A Acetyl-COA carboxylase  20.1      61  0.0018   13.9   4.2   74   23-96     40-131 (332)

No 1  
>>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} (A:126-184)
Probab=99.89  E-value=1.7e-23  Score=164.26  Aligned_cols=59  Identities=34%  Similarity=0.505  Sum_probs=58.0

Q ss_pred             CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             74999999828542131024770008993795998474016887999988997240210
Q gi|254781067|r  129 RHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       129 ~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      ++|+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++||
T Consensus         1 ~~V~l~V~etep~~KGdta~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~RA   59 (59)
T 1ueb_A            1 TVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA   59 (59)
T ss_dssp             SEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEECCCCEEECCC
T ss_conf             67999999847610355467886629980899998488427999999989987362249


No 2  
>>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} (A:157-215)
Probab=99.87  E-value=7.2e-23  Score=160.49  Aligned_cols=59  Identities=44%  Similarity=0.577  Sum_probs=57.8

Q ss_pred             CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             74999999828542131024770008993795998474016887999988997240210
Q gi|254781067|r  129 RHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       129 ~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      ++|+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|+
T Consensus         1 ~~V~l~V~et~p~vkG~T~~~~~K~A~LetG~~i~VP~FI~~Gd~I~V~T~~g~Y~~RV   59 (59)
T 1yby_A            1 NFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYXERV   59 (59)
T ss_dssp             SEEEEEEEEC-------CCSCCEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCEEEEECCCCEEEECC
T ss_conf             43899999827864777556774608980899998088407999999989987377059


No 3  
>>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} (A:1-93)
Probab=99.84  E-value=9.8e-21  Score=147.43  Aligned_cols=65  Identities=20%  Similarity=0.535  Sum_probs=63.9

Q ss_pred             CCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf             92366432167758998893799999875368887638999999824687100134278720010
Q gi|254781067|r    1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERA   65 (189)
Q Consensus         1 m~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~   65 (189)
                      ||+|+|||||+|++|++||+||+|++++|++||||+|++|+|||||.||+++|++|+++|+||+|
T Consensus        29 ~~~i~a~dirkG~~I~~~g~~~~Vl~~~~~kpGkg~a~vr~KlknL~tG~~~e~tf~s~dkve~A   93 (93)
T 1yby_A           29 GLXISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKXPKA   93 (93)
T ss_dssp             --CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBC
T ss_pred             CEEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCCEEEEC
T ss_conf             52437777668789999999999999887339998538999998706897478898788724551


No 4  
>>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} (A:94-156)
Probab=99.83  E-value=1.1e-20  Score=147.22  Aligned_cols=63  Identities=32%  Similarity=0.632  Sum_probs=61.8

Q ss_pred             EECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCC
Q ss_conf             105640578996198899994688764321154300133201378615689766777440158
Q gi|254781067|r   66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVP  128 (189)
Q Consensus        66 ~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP  128 (189)
                      +++++++||||.||+.|||||++||||++|+++.+|++.+||+|||+|.+++|+|+||+|+||
T Consensus         1 ~ie~~~~qylY~dg~~~~FMd~etyeQi~i~~~~ig~~~~~L~eg~~v~v~~~~~~~i~v~lP   63 (63)
T 1yby_A            1 HIERKDXQYLYNDGDLYYFXDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPP   63 (63)
T ss_dssp             CCEEEEEEEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECC
T ss_conf             110146899996388479823766754322476643466511478617999817963244227


No 5  
>>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} (A:1-63)
Probab=99.80  E-value=1.5e-19  Score=140.25  Aligned_cols=63  Identities=17%  Similarity=0.386  Sum_probs=61.2

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf             366432167758998893799999875368887638999999824687100134278720010
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERA   65 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~   65 (189)
                      +++||+||+|++|++||+||+|++++|++||||+|++|+|||||.||+++|++|+++|++|++
T Consensus         1 Mi~a~elk~G~~i~~~g~~~~Vl~~~~~kpgkg~a~vr~klknl~tG~~~e~tf~~~ekve~V   63 (63)
T 1ueb_A            1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDI   63 (63)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred             CCCHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf             985676779889999999899999886259988507999999836898078898589820031


No 6  
>>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} (A:64-125)
Probab=99.79  E-value=2.4e-19  Score=138.86  Aligned_cols=62  Identities=34%  Similarity=0.607  Sum_probs=60.0

Q ss_pred             EECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCC
Q ss_conf             105640578996198899994688764321154300133201378615689766777440158
Q gi|254781067|r   66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVP  128 (189)
Q Consensus        66 ~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP  128 (189)
                      .++++++||||.||+.|+|||++||||++|+++.+|++. ||+||++|.+++|+|+||+|+||
T Consensus         1 ~ve~~~~qylY~Dg~~~~FMd~etyeQ~~i~~~~i~~~~-~L~eg~~v~v~~~~~~~i~velP   62 (62)
T 1ueb_A            1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKVTPP   62 (62)
T ss_dssp             CEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTGG-GCCTTCEEEEEEETTEEEEEECC
T ss_pred             EEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEEECCEEECCCCC
T ss_conf             652136899996387189970577530455665554566-30556269999988832136668


No 7  
>>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:1-70)
Probab=98.86  E-value=2.1e-08  Score=71.94  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=59.9

Q ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf             6643216775899889379999987536888-7638999999824687100134278720010
Q gi|254781067|r    4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA   65 (189)
Q Consensus         4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~   65 (189)
                      +.+++||+|..+.++|+||+|+++..++||| |.|.+++...+|.||++.+....++++++.+
T Consensus         7 ~~~~~lkkG~yv~i~g~PCkIv~istSk~GKHG~aK~~i~gidIFtgkk~e~~~p~s~~v~VP   69 (70)
T 1iz6_A            7 VQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVP   69 (70)
T ss_dssp             EEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf             898897468999999999999999988698786418999999826796899998278842101


No 8  
>>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:1-74)
Probab=98.83  E-value=2.9e-08  Score=71.01  Aligned_cols=62  Identities=24%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf             6643216775899889379999987536888-7638999999824687100134278720010
Q gi|254781067|r    4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA   65 (189)
Q Consensus         4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~   65 (189)
                      +.+++||+|..+.++|+||+|++...++||| |.|.+++.-.+|.||++.+....++++++.+
T Consensus        11 ~~~~~lk~G~yv~i~g~PCkIv~istSk~GKHG~AK~~i~gidIFtgkk~e~~~p~s~~v~VP   73 (74)
T 2eif_A           11 VNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVP   73 (74)
T ss_dssp             EEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEE
T ss_pred             ECHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCE
T ss_conf             829996688999999998999999987688777359999995542473898885377630000


No 9  
>>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:1-71)
Probab=98.83  E-value=3.2e-08  Score=70.78  Aligned_cols=62  Identities=24%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf             6643216775899889379999987536888-7638999999824687100134278720010
Q gi|254781067|r    4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA   65 (189)
Q Consensus         4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~   65 (189)
                      +.+++||+|..+.++|.||+|+++..++||| |.|.+++.-.++.||++.+...+++++++.+
T Consensus         9 ~q~~~lkkg~yv~i~g~PCkIv~istsK~GKHG~AK~~iv~idIFtgkK~e~~~P~~~~~~VP   71 (71)
T 1bkb_A            9 VEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP   71 (71)
T ss_dssp             EEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCEE
T ss_conf             998996468999999999999999998477677617999999823670777760576523201


No 10 
>>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:1-70)
Probab=98.83  E-value=2.9e-08  Score=71.01  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEE
Q ss_conf             6643216775899889379999987536888-76389999998246871001342787200101
Q gi|254781067|r    4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAF   66 (189)
Q Consensus         4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~   66 (189)
                      +.+++||+|..++++|.||+|++...++||| |.|.+++.-.+|.||++.+....++++++.++
T Consensus         7 ~~~~~lk~G~yv~i~g~PCkIv~istSk~GKHG~aK~~i~gidIFtgkk~e~~~p~s~~~~VP~   70 (70)
T 3cpf_A            7 MQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPN   70 (70)
T ss_dssp             EEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf             6699964699999999999999899996867751489999998215730688835897998489


No 11 
>>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:1-92)
Probab=98.81  E-value=4.5e-08  Score=69.89  Aligned_cols=64  Identities=16%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEE
Q ss_conf             36643216775899889379999987536888-76389999998246871001342787200101
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAF   66 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~   66 (189)
                      .+.+++||+|..+.++|.||+|+++..++||| |.|.+++.-.+|.||++.+....++++++++.
T Consensus        28 p~q~~~lkkG~yv~i~g~PCkIv~istSk~GKHG~aK~~ivgidIFtgkk~e~~~P~s~~~~VP~   92 (92)
T 3hks_A           28 PQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPH   92 (92)
T ss_dssp             EEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCE
T ss_conf             13689975589999999989999998656888886189999986146835888853775801005


No 12 
>>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} (A:1-94)
Probab=98.80  E-value=4.2e-08  Score=70.04  Aligned_cols=63  Identities=19%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf             36643216775899889379999987536888-7638999999824687100134278720010
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA   65 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~   65 (189)
                      .+.+++||+|..+.++|.||+|+++..++||| |.|.+++.-.+|.||++.+....++++++.+
T Consensus        30 p~q~~~lkkG~yv~ikg~PCKIveistSk~GKHG~aK~~ivgidIFtgkk~e~~~P~s~~i~VP   93 (94)
T 3er0_A           30 PMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVP   93 (94)
T ss_dssp             EEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEEC
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEECCC
T ss_conf             0338986669999999978999998850798776548999999735798889985489764032


No 13 
>>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} (A:1-94)
Probab=98.78  E-value=4.7e-08  Score=69.77  Aligned_cols=64  Identities=23%  Similarity=0.349  Sum_probs=60.5

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEE
Q ss_conf             36643216775899889379999987536888-76389999998246871001342787200101
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAF   66 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~   66 (189)
                      .+.+++||+|..+.++|.||+|+++..+|||| |.|.+++.-.+|.||++.+....++++++++.
T Consensus        30 p~q~~~lkkG~yv~i~g~PCkIv~istSk~GKHG~aK~~i~gvdIFtgkk~e~~~p~s~~i~VPi   94 (94)
T 1x6o_A           30 PLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPF   94 (94)
T ss_dssp             EEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf             76578866489999999899998999616877774689999997126937889841661777888


No 14 
>>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} (A:1-101)
Probab=98.31  E-value=1.3e-06  Score=60.95  Aligned_cols=64  Identities=11%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEE-CCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCE
Q ss_conf             3664321677589988937999998753-6888-7638999999824687100134278720010105640
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNF-HPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQR   71 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~-kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~   71 (189)
                      .+.+++||+|..++++|.||+|+++..+ |||| |.+-     .+|.||++.+....++++++.+.++++.
T Consensus        34 p~q~~~lkkG~yvii~g~PCkIv~istSsKtGKHG~~g-----vdIFtgkk~e~~~p~s~~~~vPvV~k~~   99 (101)
T 1khi_A           34 TIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRYLG-----VDLFTKQLHEESSFVSNPAPSVVVQTML   99 (101)
T ss_dssp             EEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCEEEEE-----EETTTCCEEEEECCEECSSTTCCEEEEE
T ss_pred             EEEHHHCEECCEEEECCCCEEEEEEECCCCCCCCCEEE-----EEEEECCEEECCCCCCCCCCCCCCEECC
T ss_conf             02855610489999889535999987367798553588-----8578512673356546768997303777


No 15 
>>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:72-136)
Probab=97.32  E-value=0.00063  Score=44.45  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             EECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHH-HHHHCCCCCEEEEEEECCEE
Q ss_conf             1056405789961988999946887643211543001-33201378615689766777
Q gi|254781067|r   66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGD-QKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        66 ~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~-~~~fL~eg~~v~i~~~~~~~  122 (189)
                      .++++..|.+-..|+..-+||+||||.|+++.+.+.+ ...-|.+|.+|.-+-.-|+-
T Consensus         1 IIekk~gQVisi~Gd~vQlMDletYeTfei~~~~i~ee~k~kl~~G~eVeY~e~mGk~   58 (65)
T 1bkb_A            1 IIEKFTAQILSVSGDVIQLXDXRDYKTIEVPXKYVEEEAKGRLAPGAEVEVWQILDRY   58 (65)
T ss_dssp             CCEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEE
T ss_pred             EEEEEEEEEEECCCCEEEEEECCCHHHEECCHHHHHHHHHHHCCCCCEEEEEEECCCE
T ss_conf             7987778998527976999646973415867345418999746599999999978929


No 16 
>>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:71-138)
Probab=97.13  E-value=0.0013  Score=42.47  Aligned_cols=56  Identities=18%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             ECCCEEEEEEEECCEEEEEECCCCCCCCCCHHH--HHHHHHHCCCCCEEEEEEECCEE
Q ss_conf             056405789961988999946887643211543--00133201378615689766777
Q gi|254781067|r   67 VEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEV--IGDQKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        67 ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~--ig~~~~fL~eg~~v~i~~~~~~~  122 (189)
                      ++++.+|.+-..|+...+||++|||.|+++...  -.+...-|.+|.+|...-.-|+-
T Consensus         1 Iekk~aQViSi~gd~vQlMDmetYeTfei~iP~~~~ee~k~kl~~G~eVeY~e~mGk~   58 (68)
T 1iz6_A            1 IDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRI   58 (68)
T ss_dssp             CEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEE
T ss_pred             EEEEEEEEEEECCCCEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEEECCEE
T ss_conf             7667779998859936971699730138456234489999862499999999999989


No 17 
>>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:75-136)
Probab=96.79  E-value=0.0028  Score=40.47  Aligned_cols=53  Identities=17%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             ECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE
Q ss_conf             05640578996198899994688764321154300133201378615689766777
Q gi|254781067|r   67 VEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        67 ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~  122 (189)
                      ++++.+|.+-..|+..-+||++|||.|+++..-..+   =|.+|.+|...-.-|+-
T Consensus         1 Iekk~aQViSi~gd~vQlMDmetYeTfei~ipe~~~---~l~~G~evey~e~~Gr~   53 (62)
T 2eif_A            1 IDRRKGQVLAIMGDMVQIMDLQTYETLELPIPEGIE---GLEPGGEVEYIEAVGQY   53 (62)
T ss_dssp             EEEEEEEEEEEETTEEEEEETTTCCEEEEECCSCCT---TCSTTCEEEEEEETTEE
T ss_pred             EEEEEEEEEEECCCEEEEECCCCCEEEEEECCCHHH---HCCCCCEEEEEEECCCE
T ss_conf             356767799984997999079994578747763365---24599999999988979


No 18 
>>2q9s_A Fatty acid-binding protein; beta clamshell, lipid binding protein; HET: EIC; 2.30A {Mus musculus} (A:)
Probab=75.42  E-value=6.3  Score=19.98  Aligned_cols=64  Identities=13%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             9999824687100134278720010105640578996-198899994688764321154300133
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHFMNPETYDQVTVSEEVIGDQK  104 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~FMd~etyeqi~i~~~~ig~~~  104 (189)
                      ..++...+.+..+.+|+-++.+++..++-+.+...+. ||+..+..-..+-....+..++.|+..
T Consensus        73 ~tikt~t~~kt~~~tF~lGeefee~~~dg~~~k~t~t~eg~kli~~~~~~~~~~~~~Rei~g~~l  137 (155)
T 2q9s_A           73 VTIRSESTFKNTEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKL  137 (155)
T ss_dssp             EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEEEETTEEEEEEEEEETTEE
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCEEEEEEEEECCEE
T ss_conf             99999737730788886897478777999899899999599899999479982899999989999


No 19 
>>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:71-138)
Probab=73.50  E-value=6.4  Score=19.91  Aligned_cols=59  Identities=17%  Similarity=0.341  Sum_probs=42.1

Q ss_pred             ECCCEEEEEEEECCEEEEEEC--CCCCCCCCCHHHHHHHHH-HCCCCCE--EEEEEE--CCEEEEE
Q ss_conf             056405789961988999946--887643211543001332-0137861--568976--6777440
Q gi|254781067|r   67 VEDQRFQFLYQDQEGFHFMNP--ETYDQVTVSEEVIGDQKV-YFQEGME--VKLLIH--EGVALSV  125 (189)
Q Consensus        67 ie~~~~qylY~dg~~~~FMd~--etyeqi~i~~~~ig~~~~-fL~eg~~--v~i~~~--~~~~i~i  125 (189)
                      +.|.++|.+..|++....|+.  ++-|++.+|.+-+|.... -.-+|-+  |.|+--  ++.++++
T Consensus         1 V~R~eyqLidIdDg~lsLm~e~G~~reDlklP~~elg~~I~~~f~~gk~~~VtVlsAmgeE~ii~~   66 (68)
T 3cpf_A            1 IKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAI   66 (68)
T ss_dssp             CEEEEEEEEEEETTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEE
T ss_conf             999999999976995799937996668896586787899999975899699999902893988996


No 20 
>>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} (A:)
Probab=53.74  E-value=17  Score=17.38  Aligned_cols=64  Identities=8%  Similarity=0.091  Sum_probs=43.6

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             9999982468710013427872001010564057899-619889999468876432115430013
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTVSEEVIGDQ  103 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i~~~~ig~~  103 (189)
                      ...++...+.+..+.+|+.|+.+|+..++-+.+...+ .||+..+.--+..-.+..+..++.|+.
T Consensus        50 ~~~i~t~s~~kt~~~~F~lGeefee~~~dg~~~k~~~t~eg~~~~~~~~~~~~~~~~~Rei~g~~  114 (133)
T 1ftp_A           50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVHEQKGDHPTIIIREFSKEQ  114 (133)
T ss_dssp             EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEEEECSSSCEEEEEEECSSE
T ss_pred             EEEEEEECEEECCEEEEECCCCCCHHHCCCCEEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCC
T ss_conf             36652300140416899523111512037633210343468511123323899849874324220


No 21 
>>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} (A:)
Probab=53.07  E-value=17  Score=17.31  Aligned_cols=64  Identities=14%  Similarity=0.191  Sum_probs=46.6

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             99998246871001342787200101056405789-96198899994688764321154300133
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMNPETYDQVTVSEEVIGDQK  104 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd~etyeqi~i~~~~ig~~~  104 (189)
                      ..++...+.+..+.+|+-++.+++..++-+.++.. ..+|+..+..-...-.+..+..++.|+..
T Consensus        49 ~tikt~s~~k~~~~~F~lG~efee~~~dg~k~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~l  113 (131)
T 2a0a_A           49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQTQFGDKEVKIIREFNGDEV  113 (131)
T ss_dssp             EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEEEECSSSCEEEEEEECSSEE
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEEEEEECCCCCEEEEEEEECCEE
T ss_conf             99999237703899998787278878999789999989279889999939983799999999999


No 22 
>>1yiv_A Myelin P2 protein; lipid transport; HET: EPE LDA; 2.10A {Equus caballus} (A:)
Probab=49.33  E-value=20  Score=16.95  Aligned_cols=64  Identities=5%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             999982468710013427872001010564057899-6198899994688764321154300133
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTVSEEVIGDQK  104 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i~~~~ig~~~  104 (189)
                      ..++...+.+..+.+|+.++.+++..++-+.++.++ .+|+..+..-..+-....+..++.|+..
T Consensus        49 ~~i~t~t~~~~~~~~F~lG~efee~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~Re~~g~~l  113 (131)
T 1yiv_A           49 ITIRTESGFKNTEISFKLGQEFDETTADNRKAKSTVTLAAGALNQVQKWNGNETTIKRKLVDGKM  113 (131)
T ss_dssp             EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEECSSEEEEEEEETTEEEEEEEEEETTEE
T ss_pred             EEEEEECCCEEEEEEEECCCEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCEE
T ss_conf             99999547702789998895289887999898679998199799999379995699999979999


No 23 
>>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} (A:652-757,A:802-817)
Probab=49.32  E-value=11  Score=18.50  Aligned_cols=20  Identities=15%  Similarity=0.320  Sum_probs=8.7

Q ss_pred             CCCCCEEEEECCCCCEEHHC
Q ss_conf             16887999988997240210
Q gi|254781067|r  168 INIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       168 I~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      |+.||.|+|.++.|+-..||
T Consensus        70 I~dGD~V~V~s~~G~i~~~a   89 (122)
T 1tmo_A           70 IKDGDIVRVFNDRGQLLAGA   89 (122)
T ss_dssp             CCTTCEEEEECSSCEEEEEE
T ss_pred             CCCCCEEEEECCCEEEEEEE
T ss_conf             99999999986987999999


No 24 
>>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:842-1015)
Probab=48.93  E-value=11  Score=18.44  Aligned_cols=17  Identities=18%  Similarity=0.216  Sum_probs=8.8

Q ss_pred             HCCCCCEEEEEEECCEE
Q ss_conf             01378615689766777
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVA  122 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~  122 (189)
                      =|.+|..|.+.--.|..
T Consensus        90 GI~~GD~V~v~s~~G~~  106 (174)
T 1kqf_A           90 GINNGDRVTVSSKRGFI  106 (174)
T ss_dssp             TCCTTCEEEEECSSCEE
T ss_pred             CCCCCCEEEEECCCEEE
T ss_conf             99999999998699899


No 25 
>>1g7n_A Adipocyte lipid-binding protein; fatty acid binding protein, beta barrel, protein engineering; 1.50A {Mus musculus} (A:)
Probab=47.72  E-value=21  Score=16.80  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             HHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEE
Q ss_conf             4321677589988937999998753688876389999998246871001342787200101056405789-961988999
Q gi|254781067|r    6 ASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHF   84 (189)
Q Consensus         6 an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~F   84 (189)
                      |..+++=..|..+|.-|                   .++.....+..+.+|+.++.+|+..++-+.++.. ..+|+..+.
T Consensus        33 ~~~~~p~~eI~~~Gd~~-------------------~ikt~t~~k~~~~~F~lG~efee~~~~g~~~k~~~t~eg~klv~   93 (131)
T 1g7n_A           33 AGMAKPNMIISVNGDLV-------------------TIRSESTFKNTEISFKLGVEFDEETVDGRKVKSIITLDGGALVQ   93 (131)
T ss_dssp             HHHHCCCEEEEEETTEE-------------------EEEECCSSCCEEEEECTTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred             HCCCCCCEEEEECCCEE-------------------EEECCCEECCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
T ss_conf             13478978999768489-------------------99613403252799997115220122670665899965840899


Q ss_pred             EECCCCCCCCCCHHHHHH
Q ss_conf             946887643211543001
Q gi|254781067|r   85 MNPETYDQVTVSEEVIGD  102 (189)
Q Consensus        85 Md~etyeqi~i~~~~ig~  102 (189)
                      .-...-....+..++.|+
T Consensus        94 ~~~~~~~~~~~~rei~~~  111 (131)
T 1g7n_A           94 VQKWDGKSTTIKRKRDGD  111 (131)
T ss_dssp             EEEETTEEEEEEEEEETT
T ss_pred             EEEECCCCEEEEEECCCC
T ss_conf             988158630787504698


No 26 
>>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} (A:)
Probab=47.44  E-value=21  Score=16.77  Aligned_cols=64  Identities=11%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEE--EECCCEEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             99999824687100134278720010--105640578996-19889999468876432115430013
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERA--FVEDQRFQFLYQ-DQEGFHFMNPETYDQVTVSEEVIGDQ  103 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~--~ie~~~~qylY~-dg~~~~FMd~etyeqi~i~~~~ig~~  103 (189)
                      +..++...+.+..+.+|+-++.+++-  ..+-+.++..+. +|+.++..-..+-....+..++.|+.
T Consensus        48 ~~~i~t~t~~kt~~~~F~lG~efee~~~~~dg~k~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~  114 (134)
T 1ggl_A           48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEM  114 (134)
T ss_dssp             EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEEEEESSSTTCEEEEEEETTE
T ss_pred             EEEEEEEHHHHCEEEEEEECEEEHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCHHHHHHCCCE
T ss_conf             1788770112054799851203345543356763227888510048888517688720366642513


No 27 
>>2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET: MGD; 2.50A {Escherichia coli K12} (A:671-792)
Probab=47.08  E-value=9.4  Score=18.88  Aligned_cols=15  Identities=27%  Similarity=0.507  Sum_probs=6.7

Q ss_pred             CCCCCEEEEEEECCE
Q ss_conf             137861568976677
Q gi|254781067|r  107 FQEGMEVKLLIHEGV  121 (189)
Q Consensus       107 L~eg~~v~i~~~~~~  121 (189)
                      |++|..|.+.--.|.
T Consensus        52 i~dGd~V~v~s~~G~   66 (122)
T 2nya_A           52 LRRGDKVKVVSRRGE   66 (122)
T ss_dssp             CCTTCEEEEEETTEE
T ss_pred             CCCCCEEEEECCCEE
T ss_conf             999899999869868


No 28 
>>1bwy_A Protein (heart fatty acid binding protein); intracellular lipid binding protein, heart muscle; NMR {Bos taurus} (A:)
Probab=44.85  E-value=23  Score=16.52  Aligned_cols=65  Identities=8%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             999998246871001342787200101056405789-96198899994688764321154300133
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMNPETYDQVTVSEEVIGDQK  104 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd~etyeqi~i~~~~ig~~~  104 (189)
                      +..++...+.+..+.+|+.++.+|+..++-+.++.+ ..+|+..+..-..+-....+..++.|+..
T Consensus        48 ~~tikt~s~~~t~~~~F~~G~efe~~~~dg~~~k~~~t~eg~kli~~~~~~~~~~~~~Re~~~~~l  113 (132)
T 1bwy_A           48 TVIIKTQSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQKWNGQETSLVREMVDGKL  113 (132)
T ss_dssp             EEEEEECCSSCCEEEEECTTEEEEEEETTTEEEEEEEEEETTEEEEEEECSSCEEEEEEEEETTEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCEE
T ss_conf             999999536741789998797289976888479999999799899999079996799999989999


No 29 
>>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} (A:)
Probab=44.07  E-value=19  Score=16.97  Aligned_cols=84  Identities=8%  Similarity=-0.007  Sum_probs=56.5

Q ss_pred             CCCCCEEEEEEEECCCCCCE--------EEEECC--CCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf             88763899999982468710--------013427--87200101056405789961988999946887643211543001
Q gi|254781067|r   33 GKGTPITQVEMRRISDGVKV--------SNRWRT--TEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGD  102 (189)
Q Consensus        33 gkg~a~v~~klknL~tG~~~--------e~~f~~--~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~  102 (189)
                      +++.+.....|..+..+...        ..++..  +-.+....+.++.++..|..++.++++|..+-.-..++...+..
T Consensus         9 ~~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~iGr~~~~di~l~~vSr~Ha~I~~~~~~~~~~~d~~s~ngt~vng~~i~~   88 (119)
T 1ujx_A            9 SQLGSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKP   88 (119)
T ss_dssp             CCSSCCCCEEEECCSSSCCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCT
T ss_pred             CCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHEEEEECCCCEEEEEECCCCCCCEEEEEEECC
T ss_conf             33088747999935899885587269977998026532354865392471999525625899752764553884499537


Q ss_pred             HHH-HCCCCCEEEEE
Q ss_conf             332-01378615689
Q gi|254781067|r  103 QKV-YFQEGMEVKLL  116 (189)
Q Consensus       103 ~~~-fL~eg~~v~i~  116 (189)
                      ... -|..|..+.+-
T Consensus        89 ~~~~~L~~gd~I~iG  103 (119)
T 1ujx_A           89 GLSGSLSLGDVLYLV  103 (119)
T ss_dssp             TCEEEEETTCCCBCB
T ss_pred             CEEEECCCCCEEEEE
T ss_conf             668988899999994


No 30 
>>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (A:1071-1228)
Probab=43.94  E-value=11  Score=18.41  Aligned_cols=18  Identities=6%  Similarity=0.054  Sum_probs=11.6

Q ss_pred             HCCCCCEEEEEEECCEEE
Q ss_conf             013786156897667774
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVAL  123 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~i  123 (189)
                      =|++|..|.|.--.|.+.
T Consensus        59 GI~dGD~V~v~s~~G~~~   76 (158)
T 1q16_A           59 GIADNDWIEVFNSNGALT   76 (158)
T ss_dssp             TCCTTCEEEEEETTEEEE
T ss_pred             CCCCCCEEEEECCCEEEE
T ss_conf             999899999984897999


No 31 
>>1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} (A:681-802)
Probab=43.26  E-value=15  Score=17.58  Aligned_cols=16  Identities=25%  Similarity=0.536  Sum_probs=8.8

Q ss_pred             CCCCCEEEEEEECCEE
Q ss_conf             1378615689766777
Q gi|254781067|r  107 FQEGMEVKLLIHEGVA  122 (189)
Q Consensus       107 L~eg~~v~i~~~~~~~  122 (189)
                      |++|..|.+.--.|++
T Consensus        52 i~dGd~V~v~s~~G~~   67 (122)
T 1ogy_A           52 LNRGSEVRVISRRGEI   67 (122)
T ss_dssp             CCTTCEEEEECSSCEE
T ss_pred             CCCCCEEEEECCCCEE
T ss_conf             9999999998699349


No 32 
>>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} (A:604-723)
Probab=43.12  E-value=12  Score=18.28  Aligned_cols=16  Identities=13%  Similarity=0.146  Sum_probs=9.9

Q ss_pred             CCCCCEEEEEEECCEE
Q ss_conf             1378615689766777
Q gi|254781067|r  107 FQEGMEVKLLIHEGVA  122 (189)
Q Consensus       107 L~eg~~v~i~~~~~~~  122 (189)
                      |++|..|.+.--.|+.
T Consensus        52 i~~Gd~V~i~s~~G~~   67 (120)
T 2nap_A           52 IKHGDSVIVETRRDAM   67 (120)
T ss_dssp             CCTTCEEEEEETTEEE
T ss_pred             CCCCCEEEEEECCEEE
T ss_conf             9997999999188489


No 33 
>>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} (X:566-689)
Probab=41.91  E-value=17  Score=17.37  Aligned_cols=16  Identities=13%  Similarity=0.107  Sum_probs=7.4

Q ss_pred             CCCCCEEEEEEECCEE
Q ss_conf             1378615689766777
Q gi|254781067|r  107 FQEGMEVKLLIHEGVA  122 (189)
Q Consensus       107 L~eg~~v~i~~~~~~~  122 (189)
                      |++|..|.+.--.|++
T Consensus        55 i~dGD~V~v~s~~G~~   70 (124)
T 2iv2_X           55 IEDEALVWVHSRKGKI   70 (124)
T ss_dssp             CCTTCEEEEECSSCEE
T ss_pred             CCCCCEEEEECCCEEE
T ss_conf             9996999998898789


No 34 
>>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} (A:620-780)
Probab=41.84  E-value=17  Score=17.36  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=16.0

Q ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE
Q ss_conf             198899994688764321154300133201378615689766777
Q gi|254781067|r   78 DQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        78 dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~  122 (189)
                      .++.+++|++++-+.            .=|++|..|.+.--.|+.
T Consensus        45 ~~~~~v~inp~dA~~------------~Gi~dGD~V~v~s~~G~~   77 (161)
T 1eu1_A           45 AGHEPCLINPADAAA------------RGIADGDVLRVFNDRGQI   77 (161)
T ss_dssp             TTBCEEEECHHHHHT------------TTCCTTCEEEEECSSCEE
T ss_pred             CCCCEEEECHHHHHH------------CCCCCCCEEEEECCCEEE
T ss_conf             799869989999987------------699989999998599799


No 35 
>>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} (A:681-825)
Probab=41.81  E-value=15  Score=17.70  Aligned_cols=17  Identities=18%  Similarity=0.075  Sum_probs=8.9

Q ss_pred             HCCCCCEEEEEEECCEE
Q ss_conf             01378615689766777
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVA  122 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~  122 (189)
                      =|.+|..|.+.--.|+.
T Consensus        59 Gi~dGd~V~i~s~~G~~   75 (145)
T 1g8k_A           59 DVTGGDIVEVYNDFGST   75 (145)
T ss_dssp             TCCTTEEEEEECSSCEE
T ss_pred             CCCCCCEEEEECCCEEE
T ss_conf             99999999998499899


No 36 
>>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (A:717-875)
Probab=41.74  E-value=13  Score=18.07  Aligned_cols=34  Identities=9%  Similarity=-0.025  Sum_probs=20.1

Q ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE
Q ss_conf             6198899994688764321154300133201378615689766777
Q gi|254781067|r   77 QDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        77 ~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~  122 (189)
                      ..++.+++|++++-+            ..=|++|..|.|.--.|.+
T Consensus        50 ~~~~~~v~inp~dA~------------~lGI~dGD~V~v~s~~G~~   83 (159)
T 1ti6_A           50 GYKYWIMRVNSIDAE------------ARGIKNGDLIRAYNDRGSV   83 (159)
T ss_dssp             TEEEEEEEEEHHHHH------------HTTCCTTCEEEEEETTEEE
T ss_pred             CCCCCEEEECHHHHH------------HCCCCCCCEEEEECCCEEE
T ss_conf             577865898999998------------7699989999998489699


No 37 
>>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} (A:1-133)
Probab=41.25  E-value=17  Score=17.27  Aligned_cols=17  Identities=35%  Similarity=0.301  Sum_probs=9.1

Q ss_pred             HCCCCCEEEEEEECCEE
Q ss_conf             01378615689766777
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVA  122 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~  122 (189)
                      =|++|..|.+.--.|++
T Consensus        66 Gi~dGd~V~i~s~~G~v   82 (133)
T 2ki8_A           66 GLQEGDRVKVKTEFGEV   82 (133)
T ss_dssp             TCCTTCEEEEECSSCEE
T ss_pred             CCCCCCEEEEECCCEEE
T ss_conf             99999999998799689


No 38 
>>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} (A:)
Probab=41.05  E-value=26  Score=16.16  Aligned_cols=64  Identities=11%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             999982468710013427872001010564057899-6198899994688764321154300133
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTVSEEVIGDQK  104 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i~~~~ig~~~  104 (189)
                      ..++...+.+..+.+|+.++.+|+...+-+.++.++ .+|+..+.--..+.....+..++.|+..
T Consensus        49 ~tikt~s~~kt~~~~F~lG~efee~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~l  113 (131)
T 1fdq_A           49 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM  113 (131)
T ss_dssp             EEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEEEETTEEEEEEEEEETTEE
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCEE
T ss_conf             99999767722799998586089986999789999999699999999669995799999989999


No 39 
>>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} (A:95-167)
Probab=40.23  E-value=9.9  Score=18.75  Aligned_cols=60  Identities=30%  Similarity=0.413  Sum_probs=42.6

Q ss_pred             ECCCEEEEEEEECCEEEEEEC--CCCCCCCCCHHHHHHHHHHC-CCCCE--EEEEEE--CCEEEEEC
Q ss_conf             056405789961988999946--88764321154300133201-37861--568976--67774401
Q gi|254781067|r   67 VEDQRFQFLYQDQEGFHFMNP--ETYDQVTVSEEVIGDQKVYF-QEGME--VKLLIH--EGVALSVE  126 (189)
Q Consensus        67 ie~~~~qylY~dg~~~~FMd~--etyeqi~i~~~~ig~~~~fL-~eg~~--v~i~~~--~~~~i~i~  126 (189)
                      +.|+++|.+..+++....|+.  ++-|.+.+|.+-++...+-. -+|-+  |.|+--  ++.++++.
T Consensus         1 V~R~eYqLidIdDG~lsLm~e~G~~keDlklP~~el~~~I~~~f~~gk~i~vtVlsamGeE~iv~~K   67 (73)
T 3er0_A            1 VKRNEYQLLDIDDGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAISFK   67 (73)
T ss_dssp             CCEEEEECCCCTTTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEE
T ss_conf             9877789999769953988379967888885867878999998628982999999038969999988


No 40 
>>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:583-727)
Probab=38.91  E-value=20  Score=16.89  Aligned_cols=17  Identities=12%  Similarity=-0.001  Sum_probs=10.6

Q ss_pred             HCCCCCEEEEEEECCEE
Q ss_conf             01378615689766777
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVA  122 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~  122 (189)
                      =|++|..|.+.--.|.+
T Consensus        56 Gi~~Gd~V~v~s~~G~~   72 (145)
T 2e7z_A           56 GLPSGEWIWVETTHGRL   72 (145)
T ss_dssp             TCCTTSEEEEECSSCEE
T ss_pred             CCCCCCEEEEECCCEEE
T ss_conf             99999999998499899


No 41 
>>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:93-167)
Probab=38.85  E-value=28  Score=15.95  Aligned_cols=52  Identities=15%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             ECCCEEEEEEEECC-EEEEEEC--CCCCCCCCCHH-HHHHHHH-HCCCCCEEEEEEE
Q ss_conf             05640578996198-8999946--88764321154-3001332-0137861568976
Q gi|254781067|r   67 VEDQRFQFLYQDQE-GFHFMNP--ETYDQVTVSEE-VIGDQKV-YFQEGMEVKLLIH  118 (189)
Q Consensus        67 ie~~~~qylY~dg~-~~~FMd~--etyeqi~i~~~-~ig~~~~-fL~eg~~v~i~~~  118 (189)
                      +.|+++|.+..++| ....|+.  ++-|.+.+|.. -++.... ..-+|-.+.+...
T Consensus         1 V~R~eYqLidI~dDG~lsLm~e~G~~k~Dl~lP~~~el~~~I~~~fe~gk~v~V~Vl   57 (75)
T 3hks_A            1 VNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVM   57 (75)
T ss_dssp             CEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             998668999986997499970588410112135514677899988538998999999


No 42 
>>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} (A:834-976)
Probab=38.59  E-value=20  Score=16.87  Aligned_cols=16  Identities=19%  Similarity=0.167  Sum_probs=8.2

Q ss_pred             CCCCCEEEEEEECCEE
Q ss_conf             1378615689766777
Q gi|254781067|r  107 FQEGMEVKLLIHEGVA  122 (189)
Q Consensus       107 L~eg~~v~i~~~~~~~  122 (189)
                      |++|..|.+.--.|..
T Consensus        53 I~~GD~V~v~s~~G~~   68 (143)
T 2ivf_A           53 IKDGDMAKLFNDFADC   68 (143)
T ss_dssp             CCTTCEEEEECSSCEE
T ss_pred             CCCCCEEEEECCCEEE
T ss_conf             9989999998089899


No 43 
>>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} (A:810-977)
Probab=37.69  E-value=16  Score=17.45  Aligned_cols=19  Identities=21%  Similarity=0.132  Sum_probs=12.4

Q ss_pred             HCCCCCEEEEEEECCEEEE
Q ss_conf             0137861568976677744
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVALS  124 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~i~  124 (189)
                      =|.+|..|.+.--.|....
T Consensus        84 Gi~~GD~V~v~s~~G~~~~  102 (168)
T 1h0h_A           84 GIKNGDKVILESVRGKLWA  102 (168)
T ss_dssp             TCCTTCEEEEEETTEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEE
T ss_conf             9998999999849989999


No 44 
>>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} (A:)
Probab=37.26  E-value=30  Score=15.80  Aligned_cols=63  Identities=14%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCE-EEEEECCCCCCCCCCHHHHHH
Q ss_conf             99999824687100134278720010105640578996-1988-999946887643211543001
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEG-FHFMNPETYDQVTVSEEVIGD  102 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~-~~FMd~etyeqi~i~~~~ig~  102 (189)
                      +..++...+.+..+.+|+.++.+++..++-+.++-++. +|+. .+..-..+.....+-.++.|+
T Consensus        50 ~~tikt~t~~~t~~~~F~lG~efee~~~~g~~~~~~~t~eg~~~~~~~~~~~~~~~~~~Re~~~~  114 (135)
T 1vyf_A           50 KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQTQVDPKNTTVIVREVDGD  114 (135)
T ss_dssp             EEEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEEEEECSSCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf             99999940574068999858738888699989987888769988999996899418999999999


No 45 
>>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} (A:1-71)
Probab=35.30  E-value=31  Score=15.69  Aligned_cols=29  Identities=14%  Similarity=0.282  Sum_probs=20.8

Q ss_pred             CCEEECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             95998474016887999988997240210
Q gi|254781067|r  159 DIRTTVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       159 G~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      +-..+.+.-++.||.+.|-++.|.|++++
T Consensus        25 ~~i~~~~~~~~~G~iV~v~~~~g~~lg~G   53 (71)
T 3c0k_A           25 GAVARXEGKASLGETIDIVDHQGKWLARG   53 (71)
T ss_dssp             GGEEEEESCCCTTCEEEEECTTCCEEEEE
T ss_pred             HHHCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf             11133679999999899984899789999


No 46 
>>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} (A:)
Probab=34.89  E-value=33  Score=15.56  Aligned_cols=58  Identities=9%  Similarity=0.009  Sum_probs=45.6

Q ss_pred             CCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHH-HHCCCCCEEEEE
Q ss_conf             8720010105640578996198899994688764321154300133-201378615689
Q gi|254781067|r   59 TEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQK-VYFQEGMEVKLL  116 (189)
Q Consensus        59 ~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~-~fL~eg~~v~i~  116 (189)
                      +-.+....+.++.++..|..+..+++.|..+-.-..++...+.... .-|.+|..+.+-
T Consensus        38 ~~~i~~~~vSr~Ha~I~~~~~~~~~~~d~~s~ngt~vng~~i~~~~~~~L~~gd~i~ig   96 (110)
T 2brf_A           38 LTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV   96 (110)
T ss_dssp             TTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEEEETTCEEEEE
T ss_pred             CCCCCCCCCCHHHEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEECCCCCEEEEE
T ss_conf             66666866292278999970686699985899863898999407847996899999990


No 47 
>>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... (A:106-134,A:205-449)
Probab=34.32  E-value=20  Score=16.92  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=19.5

Q ss_pred             EEEEEEEECCEEEEEECCCCCCCCCCH
Q ss_conf             057899619889999468876432115
Q gi|254781067|r   71 RFQFLYQDQEGFHFMNPETYDQVTVSE   97 (189)
Q Consensus        71 ~~qylY~dg~~~~FMd~etyeqi~i~~   97 (189)
                      .++|+|. .+.||||...+-=|.+-+-
T Consensus        99 TvEfl~d-~~~~yFlEvN~RlQVEh~v  124 (274)
T 2w70_A           99 TFEFLFE-NGEFYFIEMNTRIQVEHPV  124 (274)
T ss_dssp             EEEEEEE-TTEEEEEEEECSCCTTHHH
T ss_pred             EEEEEEC-CCEEEEEECCCCCCCCCCE
T ss_conf             4888631-9968874123334677645


No 48 
>>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif; 1.60A {Synechocystis SP} (B:)
Probab=34.28  E-value=19  Score=17.07  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             HCCCCCEE----EEEEECCEEEEECCCCEEEEE
Q ss_conf             01378615----689766777440158749999
Q gi|254781067|r  106 YFQEGMEV----KLLIHEGVALSVEVPRHVVFT  134 (189)
Q Consensus       106 fL~eg~~v----~i~~~~~~~i~i~lP~~v~l~  134 (189)
                      |=..||+=    .+..|+|+|||..||-.|.+.
T Consensus        26 ~Dl~G~EGev~~~v~~wkGr~ISanlP~~V~F~   58 (75)
T 1dj7_B           26 FDLQGMEGEVAAVLTEWQGRPISANLPVLVKFE   58 (75)
T ss_dssp             EECTTCEEEEEEECSEETTEECCCSSCEEEEET
T ss_pred             CCCCCCEEEEEEEEECCCCCEECCCCCEEEEEC
T ss_conf             456787777867874037959569976999976


No 49 
>>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} (A:102-176)
Probab=33.78  E-value=34  Score=15.45  Aligned_cols=59  Identities=14%  Similarity=0.245  Sum_probs=39.7

Q ss_pred             CCCEEEEEEEECCEEEEEEC--CCCCCCCCC-HHHHHHHHH-HCCCCC---EEEEEEECC--EEEEEC
Q ss_conf             56405789961988999946--887643211-543001332-013786---156897667--774401
Q gi|254781067|r   68 EDQRFQFLYQDQEGFHFMNP--ETYDQVTVS-EEVIGDQKV-YFQEGM---EVKLLIHEG--VALSVE  126 (189)
Q Consensus        68 e~~~~qylY~dg~~~~FMd~--etyeqi~i~-~~~ig~~~~-fL~eg~---~v~i~~~~~--~~i~i~  126 (189)
                      .|.++|.+..|++....|+.  ++-|.+.+| ..-+|.... -..+|.   .|.|+-.-|  .++++.
T Consensus         1 tR~eYqLidIdDg~lsLm~e~G~~keDlklP~~~elg~~I~~~f~~g~~~v~V~VlsAmgeE~~i~~K   68 (75)
T 1khi_A            1 VFKQYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDMK   68 (75)
T ss_dssp             CCEEEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEECCEEEEECCCCCEEECEECCCCHHHHHHHHHHHHCCCCCEEEEEEHHCCCEEEEEEE
T ss_conf             56578999983895899907997970210698306899999998778875899997208955578999


No 50 
>>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} (A:1-70)
Probab=31.83  E-value=35  Score=15.42  Aligned_cols=29  Identities=17%  Similarity=0.215  Sum_probs=23.0

Q ss_pred             CCEEECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             95998474016887999988997240210
Q gi|254781067|r  159 DIRTTVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       159 G~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      .-...++.-.+.||.|.|-+++|++++|+
T Consensus        24 ~~I~~v~g~~~~GdiV~v~d~~g~~lg~G   52 (70)
T 2as0_A           24 KGVVRVEGDIKPGDIVEVYTRGGKFLGKG   52 (70)
T ss_dssp             GGEEEEESCCCTTCEEEEEETTCCEEEEE
T ss_pred             HHHCCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf             34302569998899899991799799999


No 51 
>>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* (3:680-783)
Probab=31.67  E-value=23  Score=16.49  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=17.3

Q ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE
Q ss_conf             6198899994688764321154300133201378615689766777
Q gi|254781067|r   77 QDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        77 ~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~  122 (189)
                      ..++.+++|++++-+..            =|++|..|.|.--.|++
T Consensus        31 ~~~~~~v~in~~dA~~l------------Gi~dgd~V~v~s~~G~i   64 (104)
T 3i9v_3           31 EAARAELWAHPETARAE------------ALPEGAQVAVETPFGRV   64 (104)
T ss_dssp             HHTCCEEEECHHHHHHT------------TCCTTCEEEEEETTEEE
T ss_pred             HCCCCEEEECHHHHHHC------------CCCCCCEEEEECCCEEE
T ss_conf             06998799899999876------------99998999998698899


No 52 
>>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* (A:605-765)
Probab=30.88  E-value=28  Score=15.96  Aligned_cols=17  Identities=35%  Similarity=0.442  Sum_probs=12.5

Q ss_pred             HCCCCCEEEEEEECCEE
Q ss_conf             01378615689766777
Q gi|254781067|r  106 YFQEGMEVKLLIHEGVA  122 (189)
Q Consensus       106 fL~eg~~v~i~~~~~~~  122 (189)
                      =|++|..|.+.--.|.+
T Consensus        56 GI~~GD~V~v~s~~G~~   72 (161)
T 2vpz_A           56 GLKEGDYVMLVNQDGVK   72 (161)
T ss_dssp             TCCTTCEEEEEETTCCE
T ss_pred             CCCCCCEEEEEECCCEE
T ss_conf             99989999999089619


No 53 
>>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} (A:)
Probab=29.53  E-value=40  Score=15.02  Aligned_cols=58  Identities=16%  Similarity=0.277  Sum_probs=46.6

Q ss_pred             CCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHH-HHHCCCCCEEEEE
Q ss_conf             872001010564057899619889999468876432115430013-3201378615689
Q gi|254781067|r   59 TEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQ-KVYFQEGMEVKLL  116 (189)
Q Consensus        59 ~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~-~~fL~eg~~v~i~  116 (189)
                      +-.+....+.++.++..|...+.++++|..+=.-..|+...+... ..-|.+|..+.+.
T Consensus        32 d~~i~~~~ISr~H~~i~~~~~~~~~~~~~~s~ngt~vng~~l~~~~~~~L~~gd~I~iG   90 (102)
T 3kt9_A           32 ETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMV   90 (102)
T ss_dssp             TTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTCCEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCEEECCEEECCCCCCCCCCCCEEEEE
T ss_conf             23743765470118999953525999986888975899899468976164899999990


No 54 
>>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} (A:)
Probab=28.83  E-value=42  Score=14.94  Aligned_cols=64  Identities=5%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEE-EE-CCCCCCCCCCHHHHHHHH
Q ss_conf             9999824687100134278720010105640578996-1988999-94-688764321154300133
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHF-MN-PETYDQVTVSEEVIGDQK  104 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~F-Md-~etyeqi~i~~~~ig~~~  104 (189)
                      ..++...+.+..+.+|+.++.+++..++-+.+...+. +|+.++. +- ........+..++.|+..
T Consensus        48 ~~ikt~s~~kt~~~~f~lG~ef~e~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~~~Re~~g~~l  114 (132)
T 1ifc_A           48 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVREISGNEL  114 (132)
T ss_dssp             EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCEEEEEEECCCEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCCEE
T ss_conf             8885057864236999942406887157865545899846766677787158845899997347641


No 55 
>>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (A:1-81)
Probab=27.33  E-value=42  Score=14.90  Aligned_cols=22  Identities=14%  Similarity=-0.053  Sum_probs=11.7

Q ss_pred             CCCEEEEEEECCEEEEECCCCE
Q ss_conf             7861568976677744015874
Q gi|254781067|r  109 EGMEVKLLIHEGVALSVEVPRH  130 (189)
Q Consensus       109 eg~~v~i~~~~~~~i~i~lP~~  130 (189)
                      .|..|.+..-+...-++-+|.+
T Consensus        18 ~GD~VrV~k~~~~~eGilmPs~   39 (81)
T 2d6f_A           18 VGDMVLVEKPDVTYEGMVLDRA   39 (81)
T ss_dssp             TTCEEEEECSSCEEEEEECCCC
T ss_pred             CCCEEEEEECCEEEEEEEECCC
T ss_conf             9988999979989999996886


No 56 
>>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} (A:)
Probab=26.59  E-value=46  Score=14.70  Aligned_cols=46  Identities=11%  Similarity=0.086  Sum_probs=33.0

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEE
Q ss_conf             9999982468710013427872001010564057899-619889999
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFM   85 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FM   85 (189)
                      ...++...+.+..+.+|+.++.+++..++-+.++-.+ .+|+-++..
T Consensus        50 ~~tikt~s~~kt~~~tF~lGeef~e~~~dG~k~k~~~t~eg~kl~~~   96 (134)
T 1o8v_A           50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKHE   96 (134)
T ss_dssp             EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEEEEEEECCEEEEE
T ss_conf             99999977872378999768748987799979989999979999999


No 57 
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:105-132,A:204-323)
Probab=25.97  E-value=44  Score=14.82  Aligned_cols=28  Identities=18%  Similarity=0.269  Sum_probs=21.8

Q ss_pred             CCEEEEEEEECCEEEEEECCCCCCCCCC
Q ss_conf             6405789961988999946887643211
Q gi|254781067|r   69 DQRFQFLYQDQEGFHFMNPETYDQVTVS   96 (189)
Q Consensus        69 ~~~~qylY~dg~~~~FMd~etyeqi~i~   96 (189)
                      --++||+|..++.|+||...+.=|.+-+
T Consensus        95 ~gtvEFl~d~dg~~YflEvNpRlqvehp  122 (148)
T 1ulz_A           95 AGTMEFIADQEGNLYFIEMNTRIQVEHP  122 (148)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSCCTTHH
T ss_pred             ECEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf             4305799827997788861245577764


No 58 
>>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} (A:)
Probab=25.76  E-value=27  Score=16.14  Aligned_cols=27  Identities=26%  Similarity=0.366  Sum_probs=22.4

Q ss_pred             HCCCCCEEEECCEEEEEEEEEEECCCC
Q ss_conf             216775899889379999987536888
Q gi|254781067|r    8 AVRKGNVLDVDGKLYIVLVAKNFHPGK   34 (189)
Q Consensus         8 ~lk~G~~i~~dg~~~~V~~~~~~kpgk   34 (189)
                      .-+.|..+.++|..|+|+-...+.+|=
T Consensus         7 ~Y~~Gd~Vty~G~~Y~c~q~Hts~~~W   33 (45)
T 1ed7_A            7 AYTAGQLVTYNGKTYKCLQPHTSLAGW   33 (45)
T ss_dssp             EECTTCCEEETTEEECBCSCEEECTTC
T ss_pred             EECCCCEEEECCCEEEEEEEECCCCCC
T ss_conf             681899998899388996612156887


No 59 
>>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} (A:1-67)
Probab=24.54  E-value=45  Score=14.72  Aligned_cols=22  Identities=0%  Similarity=0.013  Sum_probs=14.3

Q ss_pred             CCCCCCCEEEEECCCCCEEHHC
Q ss_conf             4016887999988997240210
Q gi|254781067|r  166 PHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       166 ~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      --+++||.+.|-+++|+|++++
T Consensus        28 ~~~~~G~~V~v~d~~g~~lg~g   49 (67)
T 2b78_A           28 NLNLDNQVVQLYSDADIFLGTA   49 (67)
T ss_dssp             TCCCCSEEEEEECTTCCEEEEE
T ss_pred             CCCCCCCEEEEECCCCCEEEEE
T ss_conf             8778998899995899889999


No 60 
>>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:168-216,A:283-418)
Probab=24.47  E-value=50  Score=14.46  Aligned_cols=86  Identities=22%  Similarity=0.279  Sum_probs=48.5

Q ss_pred             CCCEEEECCEEE---EEEEEEEECCCCCCCEE---EEEEEECCCCCCEEEEECCCC--CE----EEE---------EECC
Q ss_conf             775899889379---99998753688876389---999998246871001342787--20----010---------1056
Q gi|254781067|r   11 KGNVLDVDGKLY---IVLVAKNFHPGKGTPIT---QVEMRRISDGVKVSNRWRTTE--QV----ERA---------FVED   69 (189)
Q Consensus        11 ~G~~i~~dg~~~---~V~~~~~~kpgkg~a~v---~~klknL~tG~~~e~~f~~~e--kv----e~~---------~ie~   69 (189)
                      .|..+.+..++|   +-++.+-..=+.|....   +---.-..+++.++..-.+.-  .+    ..+         -..-
T Consensus        37 ~~~~~~~~~~~~~~~rhiEvqvl~D~~Gnvv~lgerdcsiqr~~qk~ieeaP~~~L~~~v~~~m~~~A~rla~~igy~g~  116 (185)
T 1w96_A           37 KTGLVSVDDDIYQRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSA  116 (185)
T ss_dssp             TTCCEECCHHHHGSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HCCCCCCCCCCCCCCHHHEEEEEEECCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf             10223444100012120101346523784335424214331134444332212468999999999889989986481313


Q ss_pred             CEEEEEEE-ECCEEEEEECCCCCCCCCC
Q ss_conf             40578996-1988999946887643211
Q gi|254781067|r   70 QRFQFLYQ-DQEGFHFMNPETYDQVTVS   96 (189)
Q Consensus        70 ~~~qylY~-dg~~~~FMd~etyeqi~i~   96 (189)
                      -++||+|. +.+.|+||...+.=|.+-+
T Consensus       117 gtvEFl~D~~~~~~yflEvNpRlqveHp  144 (185)
T 1w96_A          117 GTVEYLYSHDDGKFYFLELNPRLQVEHP  144 (185)
T ss_dssp             EEEEEEECTTTCCEEEEEEECSCCTTTH
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf             0568997478764888860344566664


No 61 
>>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} (A:)
Probab=24.30  E-value=50  Score=14.44  Aligned_cols=55  Identities=5%  Similarity=0.100  Sum_probs=42.9

Q ss_pred             CEEEEEECCCEEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCCEEEE
Q ss_conf             20010105640578996-1988999946887643211543001332-0137861568
Q gi|254781067|r   61 QVERAFVEDQRFQFLYQ-DQEGFHFMNPETYDQVTVSEEVIGDQKV-YFQEGMEVKL  115 (189)
Q Consensus        61 kve~~~ie~~~~qylY~-dg~~~~FMd~etyeqi~i~~~~ig~~~~-fL~eg~~v~i  115 (189)
                      .++...+.++-+.+.|. ++..|+..|..+-.-..|+...+....+ -|.+|..+.+
T Consensus        69 ~l~~~~vSr~Ha~i~~~~~~~~~~i~dl~S~nGt~vng~~i~~~~~~~L~~Gd~I~~  125 (140)
T 2jpe_A           69 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSF  125 (140)
T ss_dssp             CCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBC
T ss_pred             EECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEECEEEECCCCEEECCCCCEEEE
T ss_conf             918988328889999987799899998998876389718804696779999999999


No 62 
>>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain mainly beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis mr-1} (A:439-577)
Probab=23.43  E-value=52  Score=14.33  Aligned_cols=17  Identities=18%  Similarity=0.153  Sum_probs=14.9

Q ss_pred             CCCCCCCEEEEECCCCC
Q ss_conf             40168879999889972
Q gi|254781067|r  166 PHINIGDDIVILTEDNS  182 (189)
Q Consensus       166 ~FI~~Gd~IkV~T~~g~  182 (189)
                      .+++.||.|.||-.+++
T Consensus       118 alv~dGD~I~iD~~~r~  134 (139)
T 2gp4_A          118 AKVQDGDLIRVDALTGE  134 (139)
T ss_dssp             GTCCTTCEEEEETTTTE
T ss_pred             EEEECCCEEEEECCCCE
T ss_conf             99407999999778998


No 63 
>>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} (A:111-138,A:210-299)
Probab=23.08  E-value=52  Score=14.34  Aligned_cols=19  Identities=21%  Similarity=0.476  Sum_probs=11.6

Q ss_pred             CEEEEEEEECCEEEEEECCC
Q ss_conf             40578996198899994688
Q gi|254781067|r   70 QRFQFLYQDQEGFHFMNPET   89 (189)
Q Consensus        70 ~~~qylY~dg~~~~FMd~et   89 (189)
                      -.+||+|.+ +.|+||...+
T Consensus        96 gTVEFlvd~-~~~YFlEvNp  114 (118)
T 2dzd_A           96 GTVEFLVSG-DEFYFIEVNP  114 (118)
T ss_dssp             EEEEEEEET-TEEEEEEEES
T ss_pred             CEEEEEEEC-CCEEEEEEEC
T ss_conf             336887505-8389998631


No 64 
>>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel; HET: PLM; 2.05A {Homo sapiens} (A:)
Probab=22.40  E-value=55  Score=14.21  Aligned_cols=63  Identities=8%  Similarity=0.025  Sum_probs=42.6

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             99998246871001342787200101056405789-9619889999468876432115430013
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMNPETYDQVTVSEEVIGDQ  103 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd~etyeqi~i~~~~ig~~  103 (189)
                      ..++...+.+..+.+|+.++.+++...+-+.++-+ -.+|+..+..-..+-....+..++.|+.
T Consensus        52 ~~i~t~t~~kt~~~~F~lG~ef~e~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~  115 (135)
T 1b56_A           52 LTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGK  115 (135)
T ss_dssp             EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEEEEEETTEEEEEEEEEETTE
T ss_pred             EEEEEEECCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCE
T ss_conf             9999993675799987578755874798847988999809989999977999479999999999


No 65 
>>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:77-159)
Probab=22.16  E-value=49  Score=14.51  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=15.6

Q ss_pred             EECCCEEECCCC-CCCCCEEEEECC
Q ss_conf             937959984740-168879999889
Q gi|254781067|r  156 LSNDIRTTVPPH-INIGDDIVILTE  179 (189)
Q Consensus       156 letG~~i~VP~F-I~~Gd~IkV~T~  179 (189)
                      |=||-.+..|.| ++.||.|.|..+
T Consensus         3 ~VNgkkVdIPSy~~k~gD~I~ik~k   27 (83)
T 1c05_A            3 LVDGSRVNIPSYRVKPGQTIAVREK   27 (83)
T ss_dssp             EETTEECCCSSCBCCTTCEEEECGG
T ss_pred             ECCCEEEEECCEEECCCCEEEECCC
T ss_conf             6043699843416217848750200


No 66 
>>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A (A:160-190,A:276-540)
Probab=20.74  E-value=59  Score=14.00  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             EEEEEEEECCCCCCCEE-EEEEEEC--CCCCCEEEEECC--CCCEEEEE----------E---CCCEEEEEEEECCEEEE
Q ss_conf             99998753688876389-9999982--468710013427--87200101----------0---56405789961988999
Q gi|254781067|r   23 IVLVAKNFHPGKGTPIT-QVEMRRI--SDGVKVSNRWRT--TEQVERAF----------V---EDQRFQFLYQDQEGFHF   84 (189)
Q Consensus        23 ~V~~~~~~kpgkg~a~v-~~klknL--~tG~~~e~~f~~--~ekve~~~----------i---e~~~~qylY~dg~~~~F   84 (189)
                      +=++.|-..-|.|..+. -.+-.++  .+++.+|..=..  ++.+....          +   .--.++|||..+..|||
T Consensus        35 RHiEvQvl~D~~Gn~v~lgeRdCSiQrr~QKviEeaPa~~l~~~~r~~m~~~a~~la~~vgy~~agTvEflvd~d~~~yF  114 (296)
T 3glk_A           35 RHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHF  114 (296)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEE
T ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
T ss_conf             00000136744980888422223333222222100011133013345667999999998184576557788705895899


Q ss_pred             EECCCCCCCCCC
Q ss_conf             946887643211
Q gi|254781067|r   85 MNPETYDQVTVS   96 (189)
Q Consensus        85 Md~etyeqi~i~   96 (189)
                      |...+==|.+-+
T Consensus       115 lEvN~RlQVEH~  126 (296)
T 3glk_A          115 LELNPRLQVEHP  126 (296)
T ss_dssp             EEEECSCCTTHH
T ss_pred             EEECCCCCCCHH
T ss_conf             960322354224


No 67 
>>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* (A:170-206,A:293-587)
Probab=20.08  E-value=61  Score=13.91  Aligned_cols=74  Identities=19%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             EEEEEEEECCCCCCCEE-EEEEEEC--CCCCCEEEEECC--CCCE-EE---E------EE---CCCEEEEEEEECCEEEE
Q ss_conf             99998753688876389-9999982--468710013427--8720-01---0------10---56405789961988999
Q gi|254781067|r   23 IVLVAKNFHPGKGTPIT-QVEMRRI--SDGVKVSNRWRT--TEQV-ER---A------FV---EDQRFQFLYQDQEGFHF   84 (189)
Q Consensus        23 ~V~~~~~~kpgkg~a~v-~~klknL--~tG~~~e~~f~~--~ekv-e~---~------~i---e~~~~qylY~dg~~~~F   84 (189)
                      +=++.|-..-+.|.... --+-.++  .+++++|..=..  ++.+ +.   +      .+   .--.+||||..++.|+|
T Consensus        40 rHIEvQvl~D~~Gn~v~l~eRdCSiQrr~QKviEeAPa~~L~~~~r~~l~~~A~~la~~vgy~~agTvEFlvd~dg~~yF  119 (332)
T 3jrx_A           40 RHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHF  119 (332)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEE
T ss_pred             CCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEE
T ss_conf             40002334316894899982352543567887279588436389999999999999997097676358998879996899


Q ss_pred             EECCCCCCCCCC
Q ss_conf             946887643211
Q gi|254781067|r   85 MNPETYDQVTVS   96 (189)
Q Consensus        85 Md~etyeqi~i~   96 (189)
                      |...+==|.+-+
T Consensus       120 lEvNtRlQVEH~  131 (332)
T 3jrx_A          120 LELNPRLQVEHP  131 (332)
T ss_dssp             EEEESSCCTTHH
T ss_pred             EEECCCCCCCCC
T ss_conf             993476555542


Done!