Query gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62] Match_columns 189 No_of_seqs 126 out of 1788 Neff 6.0 Searched_HMMs 33803 Date Wed Jun 1 22:33:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781067.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ueb_A EF-P, TT0860, elongati 99.9 1.7E-23 5.2E-28 164.3 6.9 59 129-187 1-59 (59) 2 >1yby_A Translation elongation 99.9 7.2E-23 2.1E-27 160.5 6.4 59 129-187 1-59 (59) 3 >1yby_A Translation elongation 99.8 9.8E-21 2.9E-25 147.4 9.2 65 1-65 29-93 (93) 4 >1yby_A Translation elongation 99.8 1.1E-20 3.1E-25 147.2 7.1 63 66-128 1-63 (63) 5 >1ueb_A EF-P, TT0860, elongati 99.8 1.5E-19 4.3E-24 140.2 9.0 63 3-65 1-63 (63) 6 >1ueb_A EF-P, TT0860, elongati 99.8 2.4E-19 7.2E-24 138.9 7.8 62 66-128 1-62 (62) 7 >1iz6_A Initiation factor 5A; 98.9 2.1E-08 6.1E-13 71.9 9.5 62 4-65 7-69 (70) 8 >2eif_A IF-5A, protein (eukary 98.8 2.9E-08 8.6E-13 71.0 9.5 62 4-65 11-73 (74) 9 >1bkb_A Translation initiation 98.8 3.2E-08 9.4E-13 70.8 9.6 62 4-65 9-71 (71) 10 >3cpf_A Eukaryotic translation 98.8 2.9E-08 8.6E-13 71.0 9.3 63 4-66 7-70 (70) 11 >3hks_A EIF-5A-2, eukaryotic t 98.8 4.5E-08 1.3E-12 69.9 9.7 64 3-66 28-92 (92) 12 >3er0_A Eukaryotic translation 98.8 4.2E-08 1.2E-12 70.0 9.4 63 3-65 30-93 (94) 13 >1x6o_A Eukaryotic initiation 98.8 4.7E-08 1.4E-12 69.8 9.1 64 3-66 30-94 (94) 14 >1khi_A HEX1; membrane sealing 98.3 1.3E-06 3.8E-11 61.0 6.0 64 3-71 34-99 (101) 15 >1bkb_A Translation initiation 97.3 0.00063 1.9E-08 44.4 6.3 57 66-122 1-58 (65) 16 >1iz6_A Initiation factor 5A; 97.1 0.0013 3.9E-08 42.5 6.3 56 67-122 1-58 (68) 17 >2eif_A IF-5A, protein (eukary 96.8 0.0028 8.4E-08 40.5 5.6 53 67-122 1-53 (62) 18 >2q9s_A Fatty acid-binding pro 75.4 6.3 0.00019 20.0 6.9 64 41-104 73-137 (155) 19 >3cpf_A Eukaryotic translation 73.5 6.4 0.00019 19.9 4.7 59 67-125 1-66 (68) 20 >1ftp_A Muscle fatty acid bind 53.7 17 0.00049 17.4 5.8 64 40-103 50-114 (133) 21 >2a0a_A DER F 13; beta barrel, 53.1 17 0.0005 17.3 5.4 64 41-104 49-113 (131) 22 >1yiv_A Myelin P2 protein; lip 49.3 20 0.00058 17.0 6.8 64 41-104 49-113 (131) 23 >1tmo_A TMAO reductase, trimet 49.3 11 0.00032 18.5 2.2 20 168-187 70-89 (122) 24 >1kqf_A FDH-N, formate dehydro 48.9 11 0.00033 18.4 2.2 17 106-122 90-106 (174) 25 >1g7n_A Adipocyte lipid-bindin 47.7 21 0.00061 16.8 5.9 78 6-102 33-111 (131) 26 >1ggl_A Protein (cellular reti 47.4 21 0.00062 16.8 5.5 64 40-103 48-114 (134) 27 >2nya_A Periplasmic nitrate re 47.1 9.4 0.00028 18.9 1.6 15 107-121 52-66 (122) 28 >1bwy_A Protein (heart fatty a 44.8 23 0.00068 16.5 7.6 65 40-104 48-113 (132) 29 >1ujx_A Polynucleotide kinase 44.1 19 0.00057 17.0 2.8 84 33-116 9-103 (119) 30 >1q16_A Respiratory nitrate re 43.9 11 0.00033 18.4 1.6 18 106-123 59-76 (158) 31 >1ogy_A Periplasmic nitrate re 43.3 15 0.00046 17.6 2.2 16 107-122 52-67 (122) 32 >2nap_A Protein (periplasmic n 43.1 12 0.00035 18.3 1.6 16 107-122 52-67 (120) 33 >2iv2_X Formate dehydrogenase 41.9 17 0.00049 17.4 2.2 16 107-122 55-70 (124) 34 >1eu1_A Dimethyl sulfoxide red 41.8 17 0.00049 17.4 2.2 33 78-122 45-77 (161) 35 >1g8k_A Arsenite oxidase; moly 41.8 15 0.00044 17.7 1.9 17 106-122 59-75 (145) 36 >1ti6_A Pyrogallol hydroxytran 41.7 13 0.00038 18.1 1.6 34 77-122 50-83 (159) 37 >2ki8_A Tungsten formylmethano 41.3 17 0.00051 17.3 2.2 17 106-122 66-82 (133) 38 >1fdq_A Fatty acid-binding pro 41.0 26 0.00078 16.2 5.7 64 41-104 49-113 (131) 39 >3er0_A Eukaryotic translation 40.2 9.9 0.00029 18.8 0.8 60 67-126 1-67 (73) 40 >2e7z_A Acetylene hydratase AH 38.9 20 0.00059 16.9 2.2 17 106-122 56-72 (145) 41 >3hks_A EIF-5A-2, eukaryotic t 38.9 28 0.00084 16.0 4.4 52 67-118 1-57 (75) 42 >2ivf_A Ethylbenzene dehydroge 38.6 20 0.0006 16.9 2.2 16 107-122 53-68 (143) 43 >1h0h_A Formate dehydrogenase 37.7 16 0.00048 17.5 1.6 19 106-124 84-102 (168) 44 >1vyf_A SM14, 14 kDa fatty aci 37.3 30 0.00089 15.8 6.5 63 40-102 50-114 (135) 45 >3c0k_A UPF0064 protein YCCW; 35.3 31 0.00093 15.7 2.7 29 159-187 25-53 (71) 46 >2brf_A Bifunctional polynucle 34.9 33 0.00097 15.6 4.0 58 59-116 38-96 (110) 47 >2w70_A Biotin carboxylase; li 34.3 20 0.00058 16.9 1.6 26 71-97 99-124 (274) 48 >1dj7_B Ferredoxin thioredoxin 34.3 19 0.00055 17.1 1.4 29 106-134 26-58 (75) 49 >1khi_A HEX1; membrane sealing 33.8 34 0.001 15.5 3.0 59 68-126 1-68 (75) 50 >2as0_A Hypothetical protein P 31.8 35 0.001 15.4 2.5 29 159-187 24-52 (70) 51 >3i9v_3 NADH-quinone oxidoredu 31.7 23 0.00069 16.5 1.6 34 77-122 31-64 (104) 52 >2vpz_A Thiosulfate reductase; 30.9 28 0.00084 16.0 1.9 17 106-122 56-72 (161) 53 >3kt9_A Aprataxin; FHA domain, 29.5 40 0.0012 15.0 3.6 58 59-116 32-90 (102) 54 >1ifc_A Intestinal fatty acid 28.8 42 0.0012 14.9 7.5 64 41-104 48-114 (132) 55 >2d6f_A Glutamyl-tRNA(Gln) ami 27.3 42 0.0012 14.9 2.3 22 109-130 18-39 (81) 56 >1o8v_A Fatty acid binding pro 26.6 46 0.0013 14.7 6.4 46 40-85 50-96 (134) 57 >1ulz_A Pyruvate carboxylase N 26.0 44 0.0013 14.8 2.2 28 69-96 95-122 (148) 58 >1ed7_A Chitinase A1, (CHBD-CH 25.8 27 0.00078 16.1 1.0 27 8-34 7-33 (45) 59 >2b78_A Hypothetical protein S 24.5 45 0.0013 14.7 2.0 22 166-187 28-49 (67) 60 >1w96_A ACC, acetyl-coenzyme A 24.5 50 0.0015 14.5 2.3 86 11-96 37-144 (185) 61 >2jpe_A Nuclear inhibitor of p 24.3 50 0.0015 14.4 2.4 55 61-115 69-125 (140) 62 >2gp4_A 6-phosphogluconate deh 23.4 52 0.0015 14.3 2.2 17 166-182 118-134 (139) 63 >2dzd_A Pyruvate carboxylase; 23.1 52 0.0015 14.3 2.1 19 70-89 96-114 (118) 64 >1b56_A Fatty acid binding pro 22.4 55 0.0016 14.2 5.8 63 41-103 52-115 (135) 65 >1c05_A Ribosomal protein S4 d 22.2 49 0.0014 14.5 1.8 24 156-179 3-27 (83) 66 >3glk_A Acetyl-COA carboxylase 20.7 59 0.0018 14.0 2.7 74 23-96 35-126 (296) 67 >3jrx_A Acetyl-COA carboxylase 20.1 61 0.0018 13.9 4.2 74 23-96 40-131 (332) No 1 >>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} (A:126-184) Probab=99.89 E-value=1.7e-23 Score=164.26 Aligned_cols=59 Identities=34% Similarity=0.505 Sum_probs=58.0 Q ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 74999999828542131024770008993795998474016887999988997240210 Q gi|254781067|r 129 RHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 129 ~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) ++|+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|| T Consensus 1 ~~V~l~V~etep~~KGdta~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~RA 59 (59) T 1ueb_A 1 TVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 59 (59) T ss_dssp SEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC T ss_pred CEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEECCCCEEECCC T ss_conf 67999999847610355467886629980899998488427999999989987362249 No 2 >>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} (A:157-215) Probab=99.87 E-value=7.2e-23 Score=160.49 Aligned_cols=59 Identities=44% Similarity=0.577 Sum_probs=57.8 Q ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 74999999828542131024770008993795998474016887999988997240210 Q gi|254781067|r 129 RHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 129 ~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) ++|+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|+ T Consensus 1 ~~V~l~V~et~p~vkG~T~~~~~K~A~LetG~~i~VP~FI~~Gd~I~V~T~~g~Y~~RV 59 (59) T 1yby_A 1 NFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYXERV 59 (59) T ss_dssp SEEEEEEEEC-------CCSCCEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCEEEEECCCCEEEECC T ss_conf 43899999827864777556774608980899998088407999999989987377059 No 3 >>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} (A:1-93) Probab=99.84 E-value=9.8e-21 Score=147.43 Aligned_cols=65 Identities=20% Similarity=0.535 Sum_probs=63.9 Q ss_pred CCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 92366432167758998893799999875368887638999999824687100134278720010 Q gi|254781067|r 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERA 65 (189) Q Consensus 1 m~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~ 65 (189) ||+|+|||||+|++|++||+||+|++++|++||||+|++|+|||||.||+++|++|+++|+||+| T Consensus 29 ~~~i~a~dirkG~~I~~~g~~~~Vl~~~~~kpGkg~a~vr~KlknL~tG~~~e~tf~s~dkve~A 93 (93) T 1yby_A 29 GLXISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKXPKA 93 (93) T ss_dssp --CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBC T ss_pred CEEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCCEEEEC T ss_conf 52437777668789999999999999887339998538999998706897478898788724551 No 4 >>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} (A:94-156) Probab=99.83 E-value=1.1e-20 Score=147.22 Aligned_cols=63 Identities=32% Similarity=0.632 Sum_probs=61.8 Q ss_pred EECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCC Q ss_conf 105640578996198899994688764321154300133201378615689766777440158 Q gi|254781067|r 66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVP 128 (189) Q Consensus 66 ~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP 128 (189) +++++++||||.||+.|||||++||||++|+++.+|++.+||+|||+|.+++|+|+||+|+|| T Consensus 1 ~ie~~~~qylY~dg~~~~FMd~etyeQi~i~~~~ig~~~~~L~eg~~v~v~~~~~~~i~v~lP 63 (63) T 1yby_A 1 HIERKDXQYLYNDGDLYYFXDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPP 63 (63) T ss_dssp CCEEEEEEEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECC T ss_pred CCEEEEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECC T ss_conf 110146899996388479823766754322476643466511478617999817963244227 No 5 >>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} (A:1-63) Probab=99.80 E-value=1.5e-19 Score=140.25 Aligned_cols=63 Identities=17% Similarity=0.386 Sum_probs=61.2 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 366432167758998893799999875368887638999999824687100134278720010 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERA 65 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~ 65 (189) +++||+||+|++|++||+||+|++++|++||||+|++|+|||||.||+++|++|+++|++|++ T Consensus 1 Mi~a~elk~G~~i~~~g~~~~Vl~~~~~kpgkg~a~vr~klknl~tG~~~e~tf~~~ekve~V 63 (63) T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDI 63 (63) T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEEC T ss_pred CCCHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEE T ss_conf 985676779889999999899999886259988507999999836898078898589820031 No 6 >>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} (A:64-125) Probab=99.79 E-value=2.4e-19 Score=138.86 Aligned_cols=62 Identities=34% Similarity=0.607 Sum_probs=60.0 Q ss_pred EECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCC Q ss_conf 105640578996198899994688764321154300133201378615689766777440158 Q gi|254781067|r 66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVP 128 (189) Q Consensus 66 ~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP 128 (189) .++++++||||.||+.|+|||++||||++|+++.+|++. ||+||++|.+++|+|+||+|+|| T Consensus 1 ~ve~~~~qylY~Dg~~~~FMd~etyeQ~~i~~~~i~~~~-~L~eg~~v~v~~~~~~~i~velP 62 (62) T 1ueb_A 1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKVTPP 62 (62) T ss_dssp CEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTGG-GCCTTCEEEEEEETTEEEEEECC T ss_pred EEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEEECCEEECCCCC T ss_conf 652136899996387189970577530455665554566-30556269999988832136668 No 7 >>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:1-70) Probab=98.86 E-value=2.1e-08 Score=71.94 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.9 Q ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 6643216775899889379999987536888-7638999999824687100134278720010 Q gi|254781067|r 4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA 65 (189) Q Consensus 4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~ 65 (189) +.+++||+|..+.++|+||+|+++..++||| |.|.+++...+|.||++.+....++++++.+ T Consensus 7 ~~~~~lkkG~yv~i~g~PCkIv~istSk~GKHG~aK~~i~gidIFtgkk~e~~~p~s~~v~VP 69 (70) T 1iz6_A 7 VQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVP 69 (70) T ss_dssp EEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEE T ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCC T ss_conf 898897468999999999999999988698786418999999826796899998278842101 No 8 >>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:1-74) Probab=98.83 E-value=2.9e-08 Score=71.01 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=59.7 Q ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 6643216775899889379999987536888-7638999999824687100134278720010 Q gi|254781067|r 4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA 65 (189) Q Consensus 4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~ 65 (189) +.+++||+|..+.++|+||+|++...++||| |.|.+++.-.+|.||++.+....++++++.+ T Consensus 11 ~~~~~lk~G~yv~i~g~PCkIv~istSk~GKHG~AK~~i~gidIFtgkk~e~~~p~s~~v~VP 73 (74) T 2eif_A 11 VNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVP 73 (74) T ss_dssp EEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEE T ss_pred ECHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCE T ss_conf 829996688999999998999999987688777359999995542473898885377630000 No 9 >>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:1-71) Probab=98.83 E-value=3.2e-08 Score=70.78 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=59.3 Q ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 6643216775899889379999987536888-7638999999824687100134278720010 Q gi|254781067|r 4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA 65 (189) Q Consensus 4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~ 65 (189) +.+++||+|..+.++|.||+|+++..++||| |.|.+++.-.++.||++.+...+++++++.+ T Consensus 9 ~q~~~lkkg~yv~i~g~PCkIv~istsK~GKHG~AK~~iv~idIFtgkK~e~~~P~~~~~~VP 71 (71) T 1bkb_A 9 VEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP 71 (71) T ss_dssp EEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC T ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCEE T ss_conf 998996468999999999999999998477677617999999823670777760576523201 No 10 >>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:1-70) Probab=98.83 E-value=2.9e-08 Score=71.01 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=60.2 Q ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEE Q ss_conf 6643216775899889379999987536888-76389999998246871001342787200101 Q gi|254781067|r 4 VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAF 66 (189) Q Consensus 4 i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ 66 (189) +.+++||+|..++++|.||+|++...++||| |.|.+++.-.+|.||++.+....++++++.++ T Consensus 7 ~~~~~lk~G~yv~i~g~PCkIv~istSk~GKHG~aK~~i~gidIFtgkk~e~~~p~s~~~~VP~ 70 (70) T 3cpf_A 7 MQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPN 70 (70) T ss_dssp EEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC T ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCEEEEEE T ss_conf 6699964699999999999999899996867751489999998215730688835897998489 No 11 >>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:1-92) Probab=98.81 E-value=4.5e-08 Score=69.89 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=60.6 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEE Q ss_conf 36643216775899889379999987536888-76389999998246871001342787200101 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAF 66 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ 66 (189) .+.+++||+|..+.++|.||+|+++..++||| |.|.+++.-.+|.||++.+....++++++++. T Consensus 28 p~q~~~lkkG~yv~i~g~PCkIv~istSk~GKHG~aK~~ivgidIFtgkk~e~~~P~s~~~~VP~ 92 (92) T 3hks_A 28 PQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPH 92 (92) T ss_dssp EEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEEC T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCE T ss_conf 13689975589999999989999998656888886189999986146835888853775801005 No 12 >>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} (A:1-94) Probab=98.80 E-value=4.2e-08 Score=70.04 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=60.0 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 36643216775899889379999987536888-7638999999824687100134278720010 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERA 65 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~ 65 (189) .+.+++||+|..+.++|.||+|+++..++||| |.|.+++.-.+|.||++.+....++++++.+ T Consensus 30 p~q~~~lkkG~yv~ikg~PCKIveistSk~GKHG~aK~~ivgidIFtgkk~e~~~P~s~~i~VP 93 (94) T 3er0_A 30 PMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVP 93 (94) T ss_dssp EEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEEC T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEECCC T ss_conf 0338986669999999978999998850798776548999999735798889985489764032 No 13 >>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} (A:1-94) Probab=98.78 E-value=4.7e-08 Score=69.77 Aligned_cols=64 Identities=23% Similarity=0.349 Sum_probs=60.5 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEE Q ss_conf 36643216775899889379999987536888-76389999998246871001342787200101 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAF 66 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ 66 (189) .+.+++||+|..+.++|.||+|+++..+|||| |.|.+++.-.+|.||++.+....++++++++. T Consensus 30 p~q~~~lkkG~yv~i~g~PCkIv~istSk~GKHG~aK~~i~gvdIFtgkk~e~~~p~s~~i~VPi 94 (94) T 1x6o_A 30 PLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPF 94 (94) T ss_dssp EEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEE T ss_conf 76578866489999999899998999616877774689999997126937889841661777888 No 14 >>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} (A:1-101) Probab=98.31 E-value=1.3e-06 Score=60.95 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=57.3 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEE-CCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCE Q ss_conf 3664321677589988937999998753-6888-7638999999824687100134278720010105640 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNF-HPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQR 71 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~-kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~ 71 (189) .+.+++||+|..++++|.||+|+++..+ |||| |.+- .+|.||++.+....++++++.+.++++. T Consensus 34 p~q~~~lkkG~yvii~g~PCkIv~istSsKtGKHG~~g-----vdIFtgkk~e~~~p~s~~~~vPvV~k~~ 99 (101) T 1khi_A 34 TIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRYLG-----VDLFTKQLHEESSFVSNPAPSVVVQTML 99 (101) T ss_dssp EEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCEEEEE-----EETTTCCEEEEECCEECSSTTCCEEEEE T ss_pred EEEHHHCEECCEEEECCCCEEEEEEECCCCCCCCCEEE-----EEEEECCEEECCCCCCCCCCCCCCEECC T ss_conf 02855610489999889535999987367798553588-----8578512673356546768997303777 No 15 >>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:72-136) Probab=97.32 E-value=0.00063 Score=44.45 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=49.1 Q ss_pred EECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHH-HHHHCCCCCEEEEEEECCEE Q ss_conf 1056405789961988999946887643211543001-33201378615689766777 Q gi|254781067|r 66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGD-QKVYFQEGMEVKLLIHEGVA 122 (189) Q Consensus 66 ~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~-~~~fL~eg~~v~i~~~~~~~ 122 (189) .++++..|.+-..|+..-+||+||||.|+++.+.+.+ ...-|.+|.+|.-+-.-|+- T Consensus 1 IIekk~gQVisi~Gd~vQlMDletYeTfei~~~~i~ee~k~kl~~G~eVeY~e~mGk~ 58 (65) T 1bkb_A 1 IIEKFTAQILSVSGDVIQLXDXRDYKTIEVPXKYVEEEAKGRLAPGAEVEVWQILDRY 58 (65) T ss_dssp CCEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEE T ss_pred EEEEEEEEEEECCCCEEEEEECCCHHHEECCHHHHHHHHHHHCCCCCEEEEEEECCCE T ss_conf 7987778998527976999646973415867345418999746599999999978929 No 16 >>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:71-138) Probab=97.13 E-value=0.0013 Score=42.47 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=47.7 Q ss_pred ECCCEEEEEEEECCEEEEEECCCCCCCCCCHHH--HHHHHHHCCCCCEEEEEEECCEE Q ss_conf 056405789961988999946887643211543--00133201378615689766777 Q gi|254781067|r 67 VEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEV--IGDQKVYFQEGMEVKLLIHEGVA 122 (189) Q Consensus 67 ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~--ig~~~~fL~eg~~v~i~~~~~~~ 122 (189) ++++.+|.+-..|+...+||++|||.|+++... -.+...-|.+|.+|...-.-|+- T Consensus 1 Iekk~aQViSi~gd~vQlMDmetYeTfei~iP~~~~ee~k~kl~~G~eVeY~e~mGk~ 58 (68) T 1iz6_A 1 IDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRI 58 (68) T ss_dssp CEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEE T ss_pred EEEEEEEEEEECCCCEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEEECCEE T ss_conf 7667779998859936971699730138456234489999862499999999999989 No 17 >>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:75-136) Probab=96.79 E-value=0.0028 Score=40.47 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=44.1 Q ss_pred ECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE Q ss_conf 05640578996198899994688764321154300133201378615689766777 Q gi|254781067|r 67 VEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA 122 (189) Q Consensus 67 ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~ 122 (189) ++++.+|.+-..|+..-+||++|||.|+++..-..+ =|.+|.+|...-.-|+- T Consensus 1 Iekk~aQViSi~gd~vQlMDmetYeTfei~ipe~~~---~l~~G~evey~e~~Gr~ 53 (62) T 2eif_A 1 IDRRKGQVLAIMGDMVQIMDLQTYETLELPIPEGIE---GLEPGGEVEYIEAVGQY 53 (62) T ss_dssp EEEEEEEEEEEETTEEEEEETTTCCEEEEECCSCCT---TCSTTCEEEEEEETTEE T ss_pred EEEEEEEEEEECCCEEEEECCCCCEEEEEECCCHHH---HCCCCCEEEEEEECCCE T ss_conf 356767799984997999079994578747763365---24599999999988979 No 18 >>2q9s_A Fatty acid-binding protein; beta clamshell, lipid binding protein; HET: EIC; 2.30A {Mus musculus} (A:) Probab=75.42 E-value=6.3 Score=19.98 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=47.7 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 9999824687100134278720010105640578996-198899994688764321154300133 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHFMNPETYDQVTVSEEVIGDQK 104 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~FMd~etyeqi~i~~~~ig~~~ 104 (189) ..++...+.+..+.+|+-++.+++..++-+.+...+. ||+..+..-..+-....+..++.|+.. T Consensus 73 ~tikt~t~~kt~~~tF~lGeefee~~~dg~~~k~t~t~eg~kli~~~~~~~~~~~~~Rei~g~~l 137 (155) T 2q9s_A 73 VTIRSESTFKNTEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKL 137 (155) T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEEEETTEEEEEEEEEETTEE T ss_pred EEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCEEEEEEEEECCEE T ss_conf 99999737730788886897478777999899899999599899999479982899999989999 No 19 >>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:71-138) Probab=73.50 E-value=6.4 Score=19.91 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=42.1 Q ss_pred ECCCEEEEEEEECCEEEEEEC--CCCCCCCCCHHHHHHHHH-HCCCCCE--EEEEEE--CCEEEEE Q ss_conf 056405789961988999946--887643211543001332-0137861--568976--6777440 Q gi|254781067|r 67 VEDQRFQFLYQDQEGFHFMNP--ETYDQVTVSEEVIGDQKV-YFQEGME--VKLLIH--EGVALSV 125 (189) Q Consensus 67 ie~~~~qylY~dg~~~~FMd~--etyeqi~i~~~~ig~~~~-fL~eg~~--v~i~~~--~~~~i~i 125 (189) +.|.++|.+..|++....|+. ++-|++.+|.+-+|.... -.-+|-+ |.|+-- ++.++++ T Consensus 1 V~R~eyqLidIdDg~lsLm~e~G~~reDlklP~~elg~~I~~~f~~gk~~~VtVlsAmgeE~ii~~ 66 (68) T 3cpf_A 1 IKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAI 66 (68) T ss_dssp CEEEEEEEEEEETTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEEETTEEEEEEE T ss_pred EEEEEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEE T ss_conf 999999999976995799937996668896586787899999975899699999902893988996 No 20 >>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} (A:) Probab=53.74 E-value=17 Score=17.38 Aligned_cols=64 Identities=8% Similarity=0.091 Sum_probs=43.6 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCCCHHHHHHH Q ss_conf 9999982468710013427872001010564057899-619889999468876432115430013 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTVSEEVIGDQ 103 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i~~~~ig~~ 103 (189) ...++...+.+..+.+|+.|+.+|+..++-+.+...+ .||+..+.--+..-.+..+..++.|+. T Consensus 50 ~~~i~t~s~~kt~~~~F~lGeefee~~~dg~~~k~~~t~eg~~~~~~~~~~~~~~~~~Rei~g~~ 114 (133) T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVHEQKGDHPTIIIREFSKEQ 114 (133) T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEEEECSSSCEEEEEEECSSE T ss_pred EEEEEEECEEECCEEEEECCCCCCHHHCCCCEEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCC T ss_conf 36652300140416899523111512037633210343468511123323899849874324220 No 21 >>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} (A:) Probab=53.07 E-value=17 Score=17.31 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=46.6 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 99998246871001342787200101056405789-96198899994688764321154300133 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMNPETYDQVTVSEEVIGDQK 104 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd~etyeqi~i~~~~ig~~~ 104 (189) ..++...+.+..+.+|+-++.+++..++-+.++.. ..+|+..+..-...-.+..+..++.|+.. T Consensus 49 ~tikt~s~~k~~~~~F~lG~efee~~~dg~k~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~l 113 (131) T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQTQFGDKEVKIIREFNGDEV 113 (131) T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEEEECSSSCEEEEEEECSSEE T ss_pred EEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEEEEEECCCCCEEEEEEEECCEE T ss_conf 99999237703899998787278878999789999989279889999939983799999999999 No 22 >>1yiv_A Myelin P2 protein; lipid transport; HET: EPE LDA; 2.10A {Equus caballus} (A:) Probab=49.33 E-value=20 Score=16.95 Aligned_cols=64 Identities=5% Similarity=0.113 Sum_probs=47.7 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 999982468710013427872001010564057899-6198899994688764321154300133 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTVSEEVIGDQK 104 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i~~~~ig~~~ 104 (189) ..++...+.+..+.+|+.++.+++..++-+.++.++ .+|+..+..-..+-....+..++.|+.. T Consensus 49 ~~i~t~t~~~~~~~~F~lG~efee~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~Re~~g~~l 113 (131) T 1yiv_A 49 ITIRTESGFKNTEISFKLGQEFDETTADNRKAKSTVTLAAGALNQVQKWNGNETTIKRKLVDGKM 113 (131) T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEECSSEEEEEEEETTEEEEEEEEEETTEE T ss_pred EEEEEECCCEEEEEEEECCCEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCEE T ss_conf 99999547702789998895289887999898679998199799999379995699999979999 No 23 >>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} (A:652-757,A:802-817) Probab=49.32 E-value=11 Score=18.50 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=8.7 Q ss_pred CCCCCEEEEECCCCCEEHHC Q ss_conf 16887999988997240210 Q gi|254781067|r 168 INIGDDIVILTEDNSYVERV 187 (189) Q Consensus 168 I~~Gd~IkV~T~~g~Y~~Ra 187 (189) |+.||.|+|.++.|+-..|| T Consensus 70 I~dGD~V~V~s~~G~i~~~a 89 (122) T 1tmo_A 70 IKDGDIVRVFNDRGQLLAGA 89 (122) T ss_dssp CCTTCEEEEECSSCEEEEEE T ss_pred CCCCCEEEEECCCEEEEEEE T ss_conf 99999999986987999999 No 24 >>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:842-1015) Probab=48.93 E-value=11 Score=18.44 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=8.8 Q ss_pred HCCCCCEEEEEEECCEE Q ss_conf 01378615689766777 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVA 122 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~ 122 (189) =|.+|..|.+.--.|.. T Consensus 90 GI~~GD~V~v~s~~G~~ 106 (174) T 1kqf_A 90 GINNGDRVTVSSKRGFI 106 (174) T ss_dssp TCCTTCEEEEECSSCEE T ss_pred CCCCCCEEEEECCCEEE T ss_conf 99999999998699899 No 25 >>1g7n_A Adipocyte lipid-binding protein; fatty acid binding protein, beta barrel, protein engineering; 1.50A {Mus musculus} (A:) Probab=47.72 E-value=21 Score=16.80 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=51.4 Q ss_pred HHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEE Q ss_conf 4321677589988937999998753688876389999998246871001342787200101056405789-961988999 Q gi|254781067|r 6 ASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHF 84 (189) Q Consensus 6 an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~F 84 (189) |..+++=..|..+|.-| .++.....+..+.+|+.++.+|+..++-+.++.. ..+|+..+. T Consensus 33 ~~~~~p~~eI~~~Gd~~-------------------~ikt~t~~k~~~~~F~lG~efee~~~~g~~~k~~~t~eg~klv~ 93 (131) T 1g7n_A 33 AGMAKPNMIISVNGDLV-------------------TIRSESTFKNTEISFKLGVEFDEETVDGRKVKSIITLDGGALVQ 93 (131) T ss_dssp HHHHCCCEEEEEETTEE-------------------EEEECCSSCCEEEEECTTCCEEEECTTSCEEEEEEEEETTEEEE T ss_pred HCCCCCCEEEEECCCEE-------------------EEECCCEECCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE T ss_conf 13478978999768489-------------------99613403252799997115220122670665899965840899 Q ss_pred EECCCCCCCCCCHHHHHH Q ss_conf 946887643211543001 Q gi|254781067|r 85 MNPETYDQVTVSEEVIGD 102 (189) Q Consensus 85 Md~etyeqi~i~~~~ig~ 102 (189) .-...-....+..++.|+ T Consensus 94 ~~~~~~~~~~~~rei~~~ 111 (131) T 1g7n_A 94 VQKWDGKSTTIKRKRDGD 111 (131) T ss_dssp EEEETTEEEEEEEEEETT T ss_pred EEEECCCCEEEEEECCCC T ss_conf 988158630787504698 No 26 >>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} (A:) Probab=47.44 E-value=21 Score=16.77 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=41.4 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEE--EECCCEEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHH Q ss_conf 99999824687100134278720010--105640578996-19889999468876432115430013 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERA--FVEDQRFQFLYQ-DQEGFHFMNPETYDQVTVSEEVIGDQ 103 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~--~ie~~~~qylY~-dg~~~~FMd~etyeqi~i~~~~ig~~ 103 (189) +..++...+.+..+.+|+-++.+++- ..+-+.++..+. +|+.++..-..+-....+..++.|+. T Consensus 48 ~~~i~t~t~~kt~~~~F~lG~efee~~~~~dg~k~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~ 114 (134) T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEM 114 (134) T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEEEEESSSTTCEEEEEEETTE T ss_pred EEEEEEEHHHHCEEEEEEECEEEHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCHHHHHHCCCE T ss_conf 1788770112054799851203345543356763227888510048888517688720366642513 No 27 >>2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET: MGD; 2.50A {Escherichia coli K12} (A:671-792) Probab=47.08 E-value=9.4 Score=18.88 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=6.7 Q ss_pred CCCCCEEEEEEECCE Q ss_conf 137861568976677 Q gi|254781067|r 107 FQEGMEVKLLIHEGV 121 (189) Q Consensus 107 L~eg~~v~i~~~~~~ 121 (189) |++|..|.+.--.|. T Consensus 52 i~dGd~V~v~s~~G~ 66 (122) T 2nya_A 52 LRRGDKVKVVSRRGE 66 (122) T ss_dssp CCTTCEEEEEETTEE T ss_pred CCCCCEEEEECCCEE T ss_conf 999899999869868 No 28 >>1bwy_A Protein (heart fatty acid binding protein); intracellular lipid binding protein, heart muscle; NMR {Bos taurus} (A:) Probab=44.85 E-value=23 Score=16.52 Aligned_cols=65 Identities=8% Similarity=0.110 Sum_probs=48.7 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 999998246871001342787200101056405789-96198899994688764321154300133 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMNPETYDQVTVSEEVIGDQK 104 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd~etyeqi~i~~~~ig~~~ 104 (189) +..++...+.+..+.+|+.++.+|+..++-+.++.+ ..+|+..+..-..+-....+..++.|+.. T Consensus 48 ~~tikt~s~~~t~~~~F~~G~efe~~~~dg~~~k~~~t~eg~kli~~~~~~~~~~~~~Re~~~~~l 113 (132) T 1bwy_A 48 TVIIKTQSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQKWNGQETSLVREMVDGKL 113 (132) T ss_dssp EEEEEECCSSCCEEEEECTTEEEEEEETTTEEEEEEEEEETTEEEEEEECSSCEEEEEEEEETTEE T ss_pred EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCEE T ss_conf 999999536741789998797289976888479999999799899999079996799999989999 No 29 >>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} (A:) Probab=44.07 E-value=19 Score=16.97 Aligned_cols=84 Identities=8% Similarity=-0.007 Sum_probs=56.5 Q ss_pred CCCCCEEEEEEEECCCCCCE--------EEEECC--CCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHH Q ss_conf 88763899999982468710--------013427--87200101056405789961988999946887643211543001 Q gi|254781067|r 33 GKGTPITQVEMRRISDGVKV--------SNRWRT--TEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGD 102 (189) Q Consensus 33 gkg~a~v~~klknL~tG~~~--------e~~f~~--~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~ 102 (189) +++.+.....|..+..+... ..++.. +-.+....+.++.++..|..++.++++|..+-.-..++...+.. T Consensus 9 ~~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~iGr~~~~di~l~~vSr~Ha~I~~~~~~~~~~~d~~s~ngt~vng~~i~~ 88 (119) T 1ujx_A 9 SQLGSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKP 88 (119) T ss_dssp CCSSCCCCEEEECCSSSCCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCT T ss_pred CCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHEEEEECCCCEEEEEECCCCCCCEEEEEEECC T ss_conf 33088747999935899885587269977998026532354865392471999525625899752764553884499537 Q ss_pred HHH-HCCCCCEEEEE Q ss_conf 332-01378615689 Q gi|254781067|r 103 QKV-YFQEGMEVKLL 116 (189) Q Consensus 103 ~~~-fL~eg~~v~i~ 116 (189) ... -|..|..+.+- T Consensus 89 ~~~~~L~~gd~I~iG 103 (119) T 1ujx_A 89 GLSGSLSLGDVLYLV 103 (119) T ss_dssp TCEEEEETTCCCBCB T ss_pred CEEEECCCCCEEEEE T ss_conf 668988899999994 No 30 >>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (A:1071-1228) Probab=43.94 E-value=11 Score=18.41 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=11.6 Q ss_pred HCCCCCEEEEEEECCEEE Q ss_conf 013786156897667774 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVAL 123 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~i 123 (189) =|++|..|.|.--.|.+. T Consensus 59 GI~dGD~V~v~s~~G~~~ 76 (158) T 1q16_A 59 GIADNDWIEVFNSNGALT 76 (158) T ss_dssp TCCTTCEEEEEETTEEEE T ss_pred CCCCCCEEEEECCCEEEE T ss_conf 999899999984897999 No 31 >>1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} (A:681-802) Probab=43.26 E-value=15 Score=17.58 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=8.8 Q ss_pred CCCCCEEEEEEECCEE Q ss_conf 1378615689766777 Q gi|254781067|r 107 FQEGMEVKLLIHEGVA 122 (189) Q Consensus 107 L~eg~~v~i~~~~~~~ 122 (189) |++|..|.+.--.|++ T Consensus 52 i~dGd~V~v~s~~G~~ 67 (122) T 1ogy_A 52 LNRGSEVRVISRRGEI 67 (122) T ss_dssp CCTTCEEEEECSSCEE T ss_pred CCCCCEEEEECCCCEE T ss_conf 9999999998699349 No 32 >>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} (A:604-723) Probab=43.12 E-value=12 Score=18.28 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=9.9 Q ss_pred CCCCCEEEEEEECCEE Q ss_conf 1378615689766777 Q gi|254781067|r 107 FQEGMEVKLLIHEGVA 122 (189) Q Consensus 107 L~eg~~v~i~~~~~~~ 122 (189) |++|..|.+.--.|+. T Consensus 52 i~~Gd~V~i~s~~G~~ 67 (120) T 2nap_A 52 IKHGDSVIVETRRDAM 67 (120) T ss_dssp CCTTCEEEEEETTEEE T ss_pred CCCCCEEEEEECCEEE T ss_conf 9997999999188489 No 33 >>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} (X:566-689) Probab=41.91 E-value=17 Score=17.37 Aligned_cols=16 Identities=13% Similarity=0.107 Sum_probs=7.4 Q ss_pred CCCCCEEEEEEECCEE Q ss_conf 1378615689766777 Q gi|254781067|r 107 FQEGMEVKLLIHEGVA 122 (189) Q Consensus 107 L~eg~~v~i~~~~~~~ 122 (189) |++|..|.+.--.|++ T Consensus 55 i~dGD~V~v~s~~G~~ 70 (124) T 2iv2_X 55 IEDEALVWVHSRKGKI 70 (124) T ss_dssp CCTTCEEEEECSSCEE T ss_pred CCCCCEEEEECCCEEE T ss_conf 9996999998898789 No 34 >>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} (A:620-780) Probab=41.84 E-value=17 Score=17.36 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=16.0 Q ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE Q ss_conf 198899994688764321154300133201378615689766777 Q gi|254781067|r 78 DQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA 122 (189) Q Consensus 78 dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~ 122 (189) .++.+++|++++-+. .=|++|..|.+.--.|+. T Consensus 45 ~~~~~v~inp~dA~~------------~Gi~dGD~V~v~s~~G~~ 77 (161) T 1eu1_A 45 AGHEPCLINPADAAA------------RGIADGDVLRVFNDRGQI 77 (161) T ss_dssp TTBCEEEECHHHHHT------------TTCCTTCEEEEECSSCEE T ss_pred CCCCEEEECHHHHHH------------CCCCCCCEEEEECCCEEE T ss_conf 799869989999987------------699989999998599799 No 35 >>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} (A:681-825) Probab=41.81 E-value=15 Score=17.70 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=8.9 Q ss_pred HCCCCCEEEEEEECCEE Q ss_conf 01378615689766777 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVA 122 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~ 122 (189) =|.+|..|.+.--.|+. T Consensus 59 Gi~dGd~V~i~s~~G~~ 75 (145) T 1g8k_A 59 DVTGGDIVEVYNDFGST 75 (145) T ss_dssp TCCTTEEEEEECSSCEE T ss_pred CCCCCCEEEEECCCEEE T ss_conf 99999999998499899 No 36 >>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (A:717-875) Probab=41.74 E-value=13 Score=18.07 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=20.1 Q ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE Q ss_conf 6198899994688764321154300133201378615689766777 Q gi|254781067|r 77 QDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA 122 (189) Q Consensus 77 ~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~ 122 (189) ..++.+++|++++-+ ..=|++|..|.|.--.|.+ T Consensus 50 ~~~~~~v~inp~dA~------------~lGI~dGD~V~v~s~~G~~ 83 (159) T 1ti6_A 50 GYKYWIMRVNSIDAE------------ARGIKNGDLIRAYNDRGSV 83 (159) T ss_dssp TEEEEEEEEEHHHHH------------HTTCCTTCEEEEEETTEEE T ss_pred CCCCCEEEECHHHHH------------HCCCCCCCEEEEECCCEEE T ss_conf 577865898999998------------7699989999998489699 No 37 >>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} (A:1-133) Probab=41.25 E-value=17 Score=17.27 Aligned_cols=17 Identities=35% Similarity=0.301 Sum_probs=9.1 Q ss_pred HCCCCCEEEEEEECCEE Q ss_conf 01378615689766777 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVA 122 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~ 122 (189) =|++|..|.+.--.|++ T Consensus 66 Gi~dGd~V~i~s~~G~v 82 (133) T 2ki8_A 66 GLQEGDRVKVKTEFGEV 82 (133) T ss_dssp TCCTTCEEEEECSSCEE T ss_pred CCCCCCEEEEECCCEEE T ss_conf 99999999998799689 No 38 >>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} (A:) Probab=41.05 E-value=26 Score=16.16 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=45.7 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 999982468710013427872001010564057899-6198899994688764321154300133 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTVSEEVIGDQK 104 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i~~~~ig~~~ 104 (189) ..++...+.+..+.+|+.++.+|+...+-+.++.++ .+|+..+.--..+.....+..++.|+.. T Consensus 49 ~tikt~s~~kt~~~~F~lG~efee~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~l 113 (131) T 1fdq_A 49 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 113 (131) T ss_dssp EEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEEEETTEEEEEEEEEETTEE T ss_pred EEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCEE T ss_conf 99999767722799998586089986999789999999699999999669995799999989999 No 39 >>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} (A:95-167) Probab=40.23 E-value=9.9 Score=18.75 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=42.6 Q ss_pred ECCCEEEEEEEECCEEEEEEC--CCCCCCCCCHHHHHHHHHHC-CCCCE--EEEEEE--CCEEEEEC Q ss_conf 056405789961988999946--88764321154300133201-37861--568976--67774401 Q gi|254781067|r 67 VEDQRFQFLYQDQEGFHFMNP--ETYDQVTVSEEVIGDQKVYF-QEGME--VKLLIH--EGVALSVE 126 (189) Q Consensus 67 ie~~~~qylY~dg~~~~FMd~--etyeqi~i~~~~ig~~~~fL-~eg~~--v~i~~~--~~~~i~i~ 126 (189) +.|+++|.+..+++....|+. ++-|.+.+|.+-++...+-. -+|-+ |.|+-- ++.++++. T Consensus 1 V~R~eYqLidIdDG~lsLm~e~G~~keDlklP~~el~~~I~~~f~~gk~i~vtVlsamGeE~iv~~K 67 (73) T 3er0_A 1 VKRNEYQLLDIDDGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAISFK 67 (73) T ss_dssp CCEEEEECCCCTTTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEEEEC T ss_pred EEEEEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEE T ss_conf 9877789999769953988379967888885867878999998628982999999038969999988 No 40 >>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:583-727) Probab=38.91 E-value=20 Score=16.89 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=10.6 Q ss_pred HCCCCCEEEEEEECCEE Q ss_conf 01378615689766777 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVA 122 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~ 122 (189) =|++|..|.+.--.|.+ T Consensus 56 Gi~~Gd~V~v~s~~G~~ 72 (145) T 2e7z_A 56 GLPSGEWIWVETTHGRL 72 (145) T ss_dssp TCCTTSEEEEECSSCEE T ss_pred CCCCCCEEEEECCCEEE T ss_conf 99999999998499899 No 41 >>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:93-167) Probab=38.85 E-value=28 Score=15.95 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=35.0 Q ss_pred ECCCEEEEEEEECC-EEEEEEC--CCCCCCCCCHH-HHHHHHH-HCCCCCEEEEEEE Q ss_conf 05640578996198-8999946--88764321154-3001332-0137861568976 Q gi|254781067|r 67 VEDQRFQFLYQDQE-GFHFMNP--ETYDQVTVSEE-VIGDQKV-YFQEGMEVKLLIH 118 (189) Q Consensus 67 ie~~~~qylY~dg~-~~~FMd~--etyeqi~i~~~-~ig~~~~-fL~eg~~v~i~~~ 118 (189) +.|+++|.+..++| ....|+. ++-|.+.+|.. -++.... ..-+|-.+.+... T Consensus 1 V~R~eYqLidI~dDG~lsLm~e~G~~k~Dl~lP~~~el~~~I~~~fe~gk~v~V~Vl 57 (75) T 3hks_A 1 VNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVM 57 (75) T ss_dssp CEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEE T ss_pred EEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 998668999986997499970588410112135514677899988538998999999 No 42 >>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} (A:834-976) Probab=38.59 E-value=20 Score=16.87 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=8.2 Q ss_pred CCCCCEEEEEEECCEE Q ss_conf 1378615689766777 Q gi|254781067|r 107 FQEGMEVKLLIHEGVA 122 (189) Q Consensus 107 L~eg~~v~i~~~~~~~ 122 (189) |++|..|.+.--.|.. T Consensus 53 I~~GD~V~v~s~~G~~ 68 (143) T 2ivf_A 53 IKDGDMAKLFNDFADC 68 (143) T ss_dssp CCTTCEEEEECSSCEE T ss_pred CCCCCEEEEECCCEEE T ss_conf 9989999998089899 No 43 >>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} (A:810-977) Probab=37.69 E-value=16 Score=17.45 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=12.4 Q ss_pred HCCCCCEEEEEEECCEEEE Q ss_conf 0137861568976677744 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVALS 124 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~i~ 124 (189) =|.+|..|.+.--.|.... T Consensus 84 Gi~~GD~V~v~s~~G~~~~ 102 (168) T 1h0h_A 84 GIKNGDKVILESVRGKLWA 102 (168) T ss_dssp TCCTTCEEEEEETTEEEEE T ss_pred CCCCCCEEEEECCCEEEEE T ss_conf 9998999999849989999 No 44 >>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} (A:) Probab=37.26 E-value=30 Score=15.80 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=43.0 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCE-EEEEECCCCCCCCCCHHHHHH Q ss_conf 99999824687100134278720010105640578996-1988-999946887643211543001 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEG-FHFMNPETYDQVTVSEEVIGD 102 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~-~~FMd~etyeqi~i~~~~ig~ 102 (189) +..++...+.+..+.+|+.++.+++..++-+.++-++. +|+. .+..-..+.....+-.++.|+ T Consensus 50 ~~tikt~t~~~t~~~~F~lG~efee~~~~g~~~~~~~t~eg~~~~~~~~~~~~~~~~~~Re~~~~ 114 (135) T 1vyf_A 50 KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQTQVDPKNTTVIVREVDGD 114 (135) T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEEEEECSSCEEEEEEEEETT T ss_pred EEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEECC T ss_conf 99999940574068999858738888699989987888769988999996899418999999999 No 45 >>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} (A:1-71) Probab=35.30 E-value=31 Score=15.69 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=20.8 Q ss_pred CCEEECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 95998474016887999988997240210 Q gi|254781067|r 159 DIRTTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 159 G~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) +-..+.+.-++.||.+.|-++.|.|++++ T Consensus 25 ~~i~~~~~~~~~G~iV~v~~~~g~~lg~G 53 (71) T 3c0k_A 25 GAVARXEGKASLGETIDIVDHQGKWLARG 53 (71) T ss_dssp GGEEEEESCCCTTCEEEEECTTCCEEEEE T ss_pred HHHCCCCCCCCCCCEEEEECCCCCEEEEE T ss_conf 11133679999999899984899789999 No 46 >>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} (A:) Probab=34.89 E-value=33 Score=15.56 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=45.6 Q ss_pred CCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHH-HHCCCCCEEEEE Q ss_conf 8720010105640578996198899994688764321154300133-201378615689 Q gi|254781067|r 59 TEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQK-VYFQEGMEVKLL 116 (189) Q Consensus 59 ~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~-~fL~eg~~v~i~ 116 (189) +-.+....+.++.++..|..+..+++.|..+-.-..++...+.... .-|.+|..+.+- T Consensus 38 ~~~i~~~~vSr~Ha~I~~~~~~~~~~~d~~s~ngt~vng~~i~~~~~~~L~~gd~i~ig 96 (110) T 2brf_A 38 LTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLV 96 (110) T ss_dssp TTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEEEETTCEEEEE T ss_pred CCCCCCCCCCHHHEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEECCCCCEEEEE T ss_conf 66666866292278999970686699985899863898999407847996899999990 No 47 >>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... (A:106-134,A:205-449) Probab=34.32 E-value=20 Score=16.92 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=19.5 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCCCH Q ss_conf 057899619889999468876432115 Q gi|254781067|r 71 RFQFLYQDQEGFHFMNPETYDQVTVSE 97 (189) Q Consensus 71 ~~qylY~dg~~~~FMd~etyeqi~i~~ 97 (189) .++|+|. .+.||||...+-=|.+-+- T Consensus 99 TvEfl~d-~~~~yFlEvN~RlQVEh~v 124 (274) T 2w70_A 99 TFEFLFE-NGEFYFIEMNTRIQVEHPV 124 (274) T ss_dssp EEEEEEE-TTEEEEEEEECSCCTTHHH T ss_pred EEEEEEC-CCEEEEEECCCCCCCCCCE T ss_conf 4888631-9968874123334677645 No 48 >>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif; 1.60A {Synechocystis SP} (B:) Probab=34.28 E-value=19 Score=17.07 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=20.8 Q ss_pred HCCCCCEE----EEEEECCEEEEECCCCEEEEE Q ss_conf 01378615----689766777440158749999 Q gi|254781067|r 106 YFQEGMEV----KLLIHEGVALSVEVPRHVVFT 134 (189) Q Consensus 106 fL~eg~~v----~i~~~~~~~i~i~lP~~v~l~ 134 (189) |=..||+= .+..|+|+|||..||-.|.+. T Consensus 26 ~Dl~G~EGev~~~v~~wkGr~ISanlP~~V~F~ 58 (75) T 1dj7_B 26 FDLQGMEGEVAAVLTEWQGRPISANLPVLVKFE 58 (75) T ss_dssp EECTTCEEEEEEECSEETTEECCCSSCEEEEET T ss_pred CCCCCCEEEEEEEEECCCCCEECCCCCEEEEEC T ss_conf 456787777867874037959569976999976 No 49 >>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} (A:102-176) Probab=33.78 E-value=34 Score=15.45 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=39.7 Q ss_pred CCCEEEEEEEECCEEEEEEC--CCCCCCCCC-HHHHHHHHH-HCCCCC---EEEEEEECC--EEEEEC Q ss_conf 56405789961988999946--887643211-543001332-013786---156897667--774401 Q gi|254781067|r 68 EDQRFQFLYQDQEGFHFMNP--ETYDQVTVS-EEVIGDQKV-YFQEGM---EVKLLIHEG--VALSVE 126 (189) Q Consensus 68 e~~~~qylY~dg~~~~FMd~--etyeqi~i~-~~~ig~~~~-fL~eg~---~v~i~~~~~--~~i~i~ 126 (189) .|.++|.+..|++....|+. ++-|.+.+| ..-+|.... -..+|. .|.|+-.-| .++++. T Consensus 1 tR~eYqLidIdDg~lsLm~e~G~~keDlklP~~~elg~~I~~~f~~g~~~v~V~VlsAmgeE~~i~~K 68 (75) T 1khi_A 1 VFKQYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDMK 68 (75) T ss_dssp CCEEEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEEEEE T ss_pred EEEEEEEEEEECCEEEEECCCCCEEECEECCCCHHHHHHHHHHHHCCCCCEEEEEEHHCCCEEEEEEE T ss_conf 56578999983895899907997970210698306899999998778875899997208955578999 No 50 >>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} (A:1-70) Probab=31.83 E-value=35 Score=15.42 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=23.0 Q ss_pred CCEEECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 95998474016887999988997240210 Q gi|254781067|r 159 DIRTTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 159 G~~i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) .-...++.-.+.||.|.|-+++|++++|+ T Consensus 24 ~~I~~v~g~~~~GdiV~v~d~~g~~lg~G 52 (70) T 2as0_A 24 KGVVRVEGDIKPGDIVEVYTRGGKFLGKG 52 (70) T ss_dssp GGEEEEESCCCTTCEEEEEETTCCEEEEE T ss_pred HHHCCCCCCCCCCCEEEEEECCCCEEEEE T ss_conf 34302569998899899991799799999 No 51 >>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* (3:680-783) Probab=31.67 E-value=23 Score=16.49 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=17.3 Q ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEE Q ss_conf 6198899994688764321154300133201378615689766777 Q gi|254781067|r 77 QDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVA 122 (189) Q Consensus 77 ~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~ 122 (189) ..++.+++|++++-+.. =|++|..|.|.--.|++ T Consensus 31 ~~~~~~v~in~~dA~~l------------Gi~dgd~V~v~s~~G~i 64 (104) T 3i9v_3 31 EAARAELWAHPETARAE------------ALPEGAQVAVETPFGRV 64 (104) T ss_dssp HHTCCEEEECHHHHHHT------------TCCTTCEEEEEETTEEE T ss_pred HCCCCEEEECHHHHHHC------------CCCCCCEEEEECCCEEE T ss_conf 06998799899999876------------99998999998698899 No 52 >>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* (A:605-765) Probab=30.88 E-value=28 Score=15.96 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=12.5 Q ss_pred HCCCCCEEEEEEECCEE Q ss_conf 01378615689766777 Q gi|254781067|r 106 YFQEGMEVKLLIHEGVA 122 (189) Q Consensus 106 fL~eg~~v~i~~~~~~~ 122 (189) =|++|..|.+.--.|.+ T Consensus 56 GI~~GD~V~v~s~~G~~ 72 (161) T 2vpz_A 56 GLKEGDYVMLVNQDGVK 72 (161) T ss_dssp TCCTTCEEEEEETTCCE T ss_pred CCCCCCEEEEEECCCEE T ss_conf 99989999999089619 No 53 >>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} (A:) Probab=29.53 E-value=40 Score=15.02 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=46.6 Q ss_pred CCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHH-HHHCCCCCEEEEE Q ss_conf 872001010564057899619889999468876432115430013-3201378615689 Q gi|254781067|r 59 TEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQ-KVYFQEGMEVKLL 116 (189) Q Consensus 59 ~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~-~~fL~eg~~v~i~ 116 (189) +-.+....+.++.++..|...+.++++|..+=.-..|+...+... ..-|.+|..+.+. T Consensus 32 d~~i~~~~ISr~H~~i~~~~~~~~~~~~~~s~ngt~vng~~l~~~~~~~L~~gd~I~iG 90 (102) T 3kt9_A 32 ETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMV 90 (102) T ss_dssp TTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTCCEEEE T ss_pred CCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCEEECCEEECCCCCCCCCCCCEEEEE T ss_conf 23743765470118999953525999986888975899899468976164899999990 No 54 >>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} (A:) Probab=28.83 E-value=42 Score=14.94 Aligned_cols=64 Identities=5% Similarity=0.093 Sum_probs=44.6 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEE-EE-CCCCCCCCCCHHHHHHHH Q ss_conf 9999824687100134278720010105640578996-1988999-94-688764321154300133 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHF-MN-PETYDQVTVSEEVIGDQK 104 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~F-Md-~etyeqi~i~~~~ig~~~ 104 (189) ..++...+.+..+.+|+.++.+++..++-+.+...+. +|+.++. +- ........+..++.|+.. T Consensus 48 ~~ikt~s~~kt~~~~f~lG~ef~e~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~~~Re~~g~~l 114 (132) T 1ifc_A 48 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVREISGNEL 114 (132) T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEETTEE T ss_pred EEEEECCCCCCEEEEEEECCCEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCCEE T ss_conf 8885057864236999942406887157865545899846766677787158845899997347641 No 55 >>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (A:1-81) Probab=27.33 E-value=42 Score=14.90 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=11.7 Q ss_pred CCCEEEEEEECCEEEEECCCCE Q ss_conf 7861568976677744015874 Q gi|254781067|r 109 EGMEVKLLIHEGVALSVEVPRH 130 (189) Q Consensus 109 eg~~v~i~~~~~~~i~i~lP~~ 130 (189) .|..|.+..-+...-++-+|.+ T Consensus 18 ~GD~VrV~k~~~~~eGilmPs~ 39 (81) T 2d6f_A 18 VGDMVLVEKPDVTYEGMVLDRA 39 (81) T ss_dssp TTCEEEEECSSCEEEEEECCCC T ss_pred CCCEEEEEECCEEEEEEEECCC T ss_conf 9988999979989999996886 No 56 >>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} (A:) Probab=26.59 E-value=46 Score=14.70 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=33.0 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEE Q ss_conf 9999982468710013427872001010564057899-619889999 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFM 85 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FM 85 (189) ...++...+.+..+.+|+.++.+++..++-+.++-.+ .+|+-++.. T Consensus 50 ~~tikt~s~~kt~~~tF~lGeef~e~~~dG~k~k~~~t~eg~kl~~~ 96 (134) T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKHE 96 (134) T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEEE T ss_pred EEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEEEEEEECCEEEEE T ss_conf 99999977872378999768748987799979989999979999999 No 57 >>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:105-132,A:204-323) Probab=25.97 E-value=44 Score=14.82 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=21.8 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCCC Q ss_conf 6405789961988999946887643211 Q gi|254781067|r 69 DQRFQFLYQDQEGFHFMNPETYDQVTVS 96 (189) Q Consensus 69 ~~~~qylY~dg~~~~FMd~etyeqi~i~ 96 (189) --++||+|..++.|+||...+.=|.+-+ T Consensus 95 ~gtvEFl~d~dg~~YflEvNpRlqvehp 122 (148) T 1ulz_A 95 AGTMEFIADQEGNLYFIEMNTRIQVEHP 122 (148) T ss_dssp EEEEEEEECTTCCEEEEEEECSCCTTHH T ss_pred ECEEEEEECCCCCEEEEEECCCCCCCCC T ss_conf 4305799827997788861245577764 No 58 >>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} (A:) Probab=25.76 E-value=27 Score=16.14 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.4 Q ss_pred HCCCCCEEEECCEEEEEEEEEEECCCC Q ss_conf 216775899889379999987536888 Q gi|254781067|r 8 AVRKGNVLDVDGKLYIVLVAKNFHPGK 34 (189) Q Consensus 8 ~lk~G~~i~~dg~~~~V~~~~~~kpgk 34 (189) .-+.|..+.++|..|+|+-...+.+|= T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~Hts~~~W 33 (45) T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLAGW 33 (45) T ss_dssp EECTTCCEEETTEEECBCSCEEECTTC T ss_pred EECCCCEEEECCCEEEEEEEECCCCCC T ss_conf 681899998899388996612156887 No 59 >>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} (A:1-67) Probab=24.54 E-value=45 Score=14.72 Aligned_cols=22 Identities=0% Similarity=0.013 Sum_probs=14.3 Q ss_pred CCCCCCCEEEEECCCCCEEHHC Q ss_conf 4016887999988997240210 Q gi|254781067|r 166 PHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 166 ~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) --+++||.+.|-+++|+|++++ T Consensus 28 ~~~~~G~~V~v~d~~g~~lg~g 49 (67) T 2b78_A 28 NLNLDNQVVQLYSDADIFLGTA 49 (67) T ss_dssp TCCCCSEEEEEECTTCCEEEEE T ss_pred CCCCCCCEEEEECCCCCEEEEE T ss_conf 8778998899995899889999 No 60 >>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:168-216,A:283-418) Probab=24.47 E-value=50 Score=14.46 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=48.5 Q ss_pred CCCEEEECCEEE---EEEEEEEECCCCCCCEE---EEEEEECCCCCCEEEEECCCC--CE----EEE---------EECC Q ss_conf 775899889379---99998753688876389---999998246871001342787--20----010---------1056 Q gi|254781067|r 11 KGNVLDVDGKLY---IVLVAKNFHPGKGTPIT---QVEMRRISDGVKVSNRWRTTE--QV----ERA---------FVED 69 (189) Q Consensus 11 ~G~~i~~dg~~~---~V~~~~~~kpgkg~a~v---~~klknL~tG~~~e~~f~~~e--kv----e~~---------~ie~ 69 (189) .|..+.+..++| +-++.+-..=+.|.... +---.-..+++.++..-.+.- .+ ..+ -..- T Consensus 37 ~~~~~~~~~~~~~~~rhiEvqvl~D~~Gnvv~lgerdcsiqr~~qk~ieeaP~~~L~~~v~~~m~~~A~rla~~igy~g~ 116 (185) T 1w96_A 37 KTGLVSVDDDIYQRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSA 116 (185) T ss_dssp TTCCEECCHHHHGSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEE T ss_pred HCCCCCCCCCCCCCCHHHEEEEEEECCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEC T ss_conf 10223444100012120101346523784335424214331134444332212468999999999889989986481313 Q ss_pred CEEEEEEE-ECCEEEEEECCCCCCCCCC Q ss_conf 40578996-1988999946887643211 Q gi|254781067|r 70 QRFQFLYQ-DQEGFHFMNPETYDQVTVS 96 (189) Q Consensus 70 ~~~qylY~-dg~~~~FMd~etyeqi~i~ 96 (189) -++||+|. +.+.|+||...+.=|.+-+ T Consensus 117 gtvEFl~D~~~~~~yflEvNpRlqveHp 144 (185) T 1w96_A 117 GTVEYLYSHDDGKFYFLELNPRLQVEHP 144 (185) T ss_dssp EEEEEEECTTTCCEEEEEEECSCCTTTH T ss_pred EEEEEEECCCCCEEEEEEECCCCCCCCC T ss_conf 0568997478764888860344566664 No 61 >>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} (A:) Probab=24.30 E-value=50 Score=14.44 Aligned_cols=55 Identities=5% Similarity=0.100 Sum_probs=42.9 Q ss_pred CEEEEEECCCEEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCCEEEE Q ss_conf 20010105640578996-1988999946887643211543001332-0137861568 Q gi|254781067|r 61 QVERAFVEDQRFQFLYQ-DQEGFHFMNPETYDQVTVSEEVIGDQKV-YFQEGMEVKL 115 (189) Q Consensus 61 kve~~~ie~~~~qylY~-dg~~~~FMd~etyeqi~i~~~~ig~~~~-fL~eg~~v~i 115 (189) .++...+.++-+.+.|. ++..|+..|..+-.-..|+...+....+ -|.+|..+.+ T Consensus 69 ~l~~~~vSr~Ha~i~~~~~~~~~~i~dl~S~nGt~vng~~i~~~~~~~L~~Gd~I~~ 125 (140) T 2jpe_A 69 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140) T ss_dssp CCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBC T ss_pred EECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEECEEEECCCCEEECCCCCEEEE T ss_conf 918988328889999987799899998998876389718804696779999999999 No 62 >>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain mainly beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis mr-1} (A:439-577) Probab=23.43 E-value=52 Score=14.33 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.9 Q ss_pred CCCCCCCEEEEECCCCC Q ss_conf 40168879999889972 Q gi|254781067|r 166 PHINIGDDIVILTEDNS 182 (189) Q Consensus 166 ~FI~~Gd~IkV~T~~g~ 182 (189) .+++.||.|.||-.+++ T Consensus 118 alv~dGD~I~iD~~~r~ 134 (139) T 2gp4_A 118 AKVQDGDLIRVDALTGE 134 (139) T ss_dssp GTCCTTCEEEEETTTTE T ss_pred EEEECCCEEEEECCCCE T ss_conf 99407999999778998 No 63 >>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} (A:111-138,A:210-299) Probab=23.08 E-value=52 Score=14.34 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=11.6 Q ss_pred CEEEEEEEECCEEEEEECCC Q ss_conf 40578996198899994688 Q gi|254781067|r 70 QRFQFLYQDQEGFHFMNPET 89 (189) Q Consensus 70 ~~~qylY~dg~~~~FMd~et 89 (189) -.+||+|.+ +.|+||...+ T Consensus 96 gTVEFlvd~-~~~YFlEvNp 114 (118) T 2dzd_A 96 GTVEFLVSG-DEFYFIEVNP 114 (118) T ss_dssp EEEEEEEET-TEEEEEEEES T ss_pred CEEEEEEEC-CCEEEEEEEC T ss_conf 336887505-8389998631 No 64 >>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel; HET: PLM; 2.05A {Homo sapiens} (A:) Probab=22.40 E-value=55 Score=14.21 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=42.6 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEECCCCCCCCCCHHHHHHH Q ss_conf 99998246871001342787200101056405789-9619889999468876432115430013 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMNPETYDQVTVSEEVIGDQ 103 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd~etyeqi~i~~~~ig~~ 103 (189) ..++...+.+..+.+|+.++.+++...+-+.++-+ -.+|+..+..-..+-....+..++.|+. T Consensus 52 ~~i~t~t~~kt~~~~F~lG~ef~e~~~dg~~~k~~~t~eg~klv~~~~~~~~~~~~~Re~~~~~ 115 (135) T 1b56_A 52 LTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGK 115 (135) T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEEEEEETTEEEEEEEEEETTE T ss_pred EEEEEEECCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEECCCCCEEEEEEEECCE T ss_conf 9999993675799987578755874798847988999809989999977999479999999999 No 65 >>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:77-159) Probab=22.16 E-value=49 Score=14.51 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=15.6 Q ss_pred EECCCEEECCCC-CCCCCEEEEECC Q ss_conf 937959984740-168879999889 Q gi|254781067|r 156 LSNDIRTTVPPH-INIGDDIVILTE 179 (189) Q Consensus 156 letG~~i~VP~F-I~~Gd~IkV~T~ 179 (189) |=||-.+..|.| ++.||.|.|..+ T Consensus 3 ~VNgkkVdIPSy~~k~gD~I~ik~k 27 (83) T 1c05_A 3 LVDGSRVNIPSYRVKPGQTIAVREK 27 (83) T ss_dssp EETTEECCCSSCBCCTTCEEEECGG T ss_pred ECCCEEEEECCEEECCCCEEEECCC T ss_conf 6043699843416217848750200 No 66 >>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A (A:160-190,A:276-540) Probab=20.74 E-value=59 Score=14.00 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=43.0 Q ss_pred EEEEEEEECCCCCCCEE-EEEEEEC--CCCCCEEEEECC--CCCEEEEE----------E---CCCEEEEEEEECCEEEE Q ss_conf 99998753688876389-9999982--468710013427--87200101----------0---56405789961988999 Q gi|254781067|r 23 IVLVAKNFHPGKGTPIT-QVEMRRI--SDGVKVSNRWRT--TEQVERAF----------V---EDQRFQFLYQDQEGFHF 84 (189) Q Consensus 23 ~V~~~~~~kpgkg~a~v-~~klknL--~tG~~~e~~f~~--~ekve~~~----------i---e~~~~qylY~dg~~~~F 84 (189) +=++.|-..-|.|..+. -.+-.++ .+++.+|..=.. ++.+.... + .--.++|||..+..||| T Consensus 35 RHiEvQvl~D~~Gn~v~lgeRdCSiQrr~QKviEeaPa~~l~~~~r~~m~~~a~~la~~vgy~~agTvEflvd~d~~~yF 114 (296) T 3glk_A 35 RHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHF 114 (296) T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEE T ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE T ss_conf 00000136744980888422223333222222100011133013345667999999998184576557788705895899 Q ss_pred EECCCCCCCCCC Q ss_conf 946887643211 Q gi|254781067|r 85 MNPETYDQVTVS 96 (189) Q Consensus 85 Md~etyeqi~i~ 96 (189) |...+==|.+-+ T Consensus 115 lEvN~RlQVEH~ 126 (296) T 3glk_A 115 LELNPRLQVEHP 126 (296) T ss_dssp EEEECSCCTTHH T ss_pred EEECCCCCCCHH T ss_conf 960322354224 No 67 >>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* (A:170-206,A:293-587) Probab=20.08 E-value=61 Score=13.91 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=38.5 Q ss_pred EEEEEEEECCCCCCCEE-EEEEEEC--CCCCCEEEEECC--CCCE-EE---E------EE---CCCEEEEEEEECCEEEE Q ss_conf 99998753688876389-9999982--468710013427--8720-01---0------10---56405789961988999 Q gi|254781067|r 23 IVLVAKNFHPGKGTPIT-QVEMRRI--SDGVKVSNRWRT--TEQV-ER---A------FV---EDQRFQFLYQDQEGFHF 84 (189) Q Consensus 23 ~V~~~~~~kpgkg~a~v-~~klknL--~tG~~~e~~f~~--~ekv-e~---~------~i---e~~~~qylY~dg~~~~F 84 (189) +=++.|-..-+.|.... --+-.++ .+++++|..=.. ++.+ +. + .+ .--.+||||..++.|+| T Consensus 40 rHIEvQvl~D~~Gn~v~l~eRdCSiQrr~QKviEeAPa~~L~~~~r~~l~~~A~~la~~vgy~~agTvEFlvd~dg~~yF 119 (332) T 3jrx_A 40 RHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHF 119 (332) T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEE T ss_pred CCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEE T ss_conf 40002334316894899982352543567887279588436389999999999999997097676358998879996899 Q ss_pred EECCCCCCCCCC Q ss_conf 946887643211 Q gi|254781067|r 85 MNPETYDQVTVS 96 (189) Q Consensus 85 Md~etyeqi~i~ 96 (189) |...+==|.+-+ T Consensus 120 lEvNtRlQVEH~ 131 (332) T 3jrx_A 120 LELNPRLQVEHP 131 (332) T ss_dssp EEEESSCCTTHH T ss_pred EEECCCCCCCCC T ss_conf 993476555542 Done!