HHsearch results for GI: 254781067 and protein with PDBid: 1bkb_A

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00  E-value=1.9e-37  Score=248.84  Aligned_cols=126  Identities=20%  Similarity=0.253  Sum_probs=119.7

Q ss_pred             CCE--EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE
Q ss_conf             923--6643216775899889379999987536888-7638999999824687100134278720010105640578996
Q gi|254781067|r    1 MVK--VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ   77 (189)
Q Consensus         1 m~~--i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~   77 (189)
                      |++  |+||+||+|++|++||+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||.
T Consensus         4 mat~~i~a~~lkkG~~i~~dg~p~~V~~~~~~kpGk~G~a~~~~k~k~l~tG~~~e~~~~~~e~ve~~~v~~~~~q~lY~   83 (136)
T 1bkb_A            4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSV   83 (136)
T ss_dssp             CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEE
T ss_pred             CCCCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEE
T ss_conf             30127999997568899999999999999988588777438999999825896999981387588240484434899995


Q ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHH-HHCCCCCEEEEEEECCEEEEEC
Q ss_conf             198899994688764321154300133-2013786156897667774401
Q gi|254781067|r   78 DQEGFHFMNPETYDQVTVSEEVIGDQK-VYFQEGMEVKLLIHEGVALSVE  126 (189)
Q Consensus        78 dg~~~~FMd~etyeqi~i~~~~ig~~~-~fL~eg~~v~i~~~~~~~i~i~  126 (189)
                      ||+.|+|||+|||||++||.+.+|+.. .||.||++|+++.++|+.+-+.
T Consensus        84 d~~~~~fMd~etyEq~~l~~~~vg~~~k~~l~eg~eV~v~~~~g~~~i~~  133 (136)
T 1bkb_A           84 SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR  133 (136)
T ss_dssp             CSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEECCCCHHHEECCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEE
T ss_conf             59999990499834178676785188997504999999999889799999