HHsearch results for GI: 254781067 and protein with PDBid: 1iz6_A
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=9.1e-37 Score=244.69 Aligned_cols=124 Identities=22% Similarity=0.317 Sum_probs=117.8
Q ss_pred CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC
Q ss_conf 236643216775899889379999987536888-7638999999824687100134278720010105640578996198
Q gi|254781067|r 2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE 80 (189)
Q Consensus 2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~ 80 (189)
++|.||+||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||.||+
T Consensus 5 ~~i~~~~lk~G~~i~~~g~p~~V~~~~~~kpGk~G~a~~~~k~knl~tG~~~e~~~~~~e~ve~~~v~~~~~qylY~d~~ 84 (138)
T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCC
T ss_conf 69898897468999999999999999988698786418999999826796899998278842101476677799988599
Q ss_pred EEEEEECCCCCCCCCCHH--HHHHHHHHCCCCCEEEEEEECCE--EEEE
Q ss_conf 899994688764321154--30013320137861568976677--7440
Q gi|254781067|r 81 GFHFMNPETYDQVTVSEE--VIGDQKVYFQEGMEVKLLIHEGV--ALSV 125 (189)
Q Consensus 81 ~~~FMd~etyeqi~i~~~--~ig~~~~fL~eg~~v~i~~~~~~--~i~i 125 (189)
.|+|||++||||++||.+ ++++...||+||++|++++|+|+ +|++
T Consensus 85 ~~~fMd~e~yEq~~l~~d~~l~~~~~~~l~eg~~V~v~~~~G~e~ii~~ 133 (138)
T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIKIMRI 133 (138)
T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEEEEEE
T ss_pred CEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEE
T ss_conf 3697169973013845623448999986249999999999998988999