HHsearch results for GI: 254781067 and protein with PDBid: 1yby_A

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00  E-value=0  Score=484.88  Aligned_cols=186  Identities=32%  Similarity=0.604  Sum_probs=184.7

Q ss_pred             CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE
Q ss_conf             23664321677589988937999998753688876389999998246871001342787200101056405789961988
Q gi|254781067|r    2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG   81 (189)
Q Consensus         2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~   81 (189)
                      ||++|||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++++||+++|++|.|+++++++||||.||+.
T Consensus        30 ~mi~a~dlkkG~~I~~dg~py~Vl~~~~~kpGkg~A~vr~KlKnL~tG~~~e~tf~s~ekve~a~le~~~~qyLY~Dg~~  109 (215)
T 1yby_A           30 LMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDL  109 (215)
T ss_dssp             -CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETTE
T ss_pred             EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEECCEEEEEEEEEEECCCC
T ss_conf             34487876687899999999999998862499995289999998168983478974776110111343789999968998


Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCE
Q ss_conf             99994688764321154300133201378615689766777440158749999998285421310247700089937959
Q gi|254781067|r   82 FHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIR  161 (189)
Q Consensus        82 ~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~  161 (189)
                      |+|||++||||++++++++|++.+||+||++|++++|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||++
T Consensus       110 ~~FMd~etyEQi~v~~d~ig~~~~~L~e~~~v~v~~~~~~~i~v~lP~~V~l~V~et~p~vKGdTas~~~K~A~LeTG~~  189 (215)
T 1yby_A          110 YYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGAS  189 (215)
T ss_dssp             EEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCE
T ss_conf             89873877543233366641466521468507999926842100148739999998999655654678877489818999


Q ss_pred             EECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             98474016887999988997240210
Q gi|254781067|r  162 TTVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       162 i~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      |+||+||++||+|+|||++|+|++|+
T Consensus       190 v~VP~FI~~Gd~IkV~T~~g~Y~~RV  215 (215)
T 1yby_A          190 IKVPLFVNKGDIIRIDTRTGEYMERV  215 (215)
T ss_dssp             EEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEECCCCCCCCEEEEECCCCEEEECC
T ss_conf             98488327999999989987067059