Query gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62] Match_columns 189 No_of_seqs 126 out of 1788 Neff 6.0 Searched_HMMs 23785 Date Wed Jun 1 01:17:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781067.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1yby_A Translation elongation 100.0 0 0 484.9 22.7 186 2-187 30-215 (215) 2 3a5z_B EF-P, elongation factor 100.0 0 0 488.0 12.6 188 1-188 4-191 (191) 3 1ueb_A EF-P, TT0860, elongatio 100.0 0 0 468.8 23.6 184 3-187 1-184 (184) 4 1bkb_A Translation initiation 100.0 1.9E-37 8E-42 248.8 16.7 126 1-126 4-133 (136) 5 1iz6_A Initiation factor 5A; S 100.0 9.1E-37 3.8E-41 244.7 16.4 124 2-125 5-133 (138) 6 2eif_A IF-5A, protein (eukaryo 100.0 5.9E-35 2.5E-39 233.6 16.1 122 2-126 9-131 (136) 7 3er0_A Eukaryotic translation 100.0 1.1E-34 4.5E-39 232.0 10.6 127 3-129 30-165 (167) 8 3cpf_A Eukaryotic translation 100.0 2.4E-33 9.9E-38 223.8 14.8 124 3-126 6-137 (138) 9 3hks_A EIF-5A-2, eukaryotic tr 100.0 8.3E-32 3.5E-36 214.3 15.0 123 3-125 28-160 (167) 10 1x6o_A Eukaryotic initiation f 100.0 1.2E-29 5.1E-34 201.0 14.4 117 3-119 30-158 (174) 11 1khi_A HEX1; membrane sealing, 99.3 9.7E-12 4.1E-16 91.4 9.5 122 4-125 35-168 (176) 12 3nr3_A PMP2 protein; structura 68.6 6.3 0.00027 19.0 6.7 47 40-86 70-117 (153) 13 2wut_A Myelin P2 protein; tran 63.5 8 0.00033 18.4 5.9 47 41-87 51-98 (133) 14 2w70_A Biotin carboxylase; lig 48.9 12 0.00052 17.2 3.2 27 70-97 273-299 (449) 15 1g7n_A Adipocyte lipid-binding 44.7 16 0.00068 16.5 6.9 46 40-85 48-94 (131) 16 1ftp_A Muscle fatty acid bindi 41.1 18 0.00078 16.2 5.8 47 40-86 50-97 (133) 17 1fdq_A Fatty acid-binding prot 41.0 19 0.00078 16.2 5.7 46 40-85 48-94 (131) 18 1kqf_A FDH-N, formate dehydrog 39.9 13 0.00055 17.1 2.2 22 167-188 931-952 (1015) 19 2ki8_A Tungsten formylmethanof 38.3 14 0.00061 16.8 2.2 71 29-121 9-81 (146) 20 1ti6_A Pyrogallol hydroxytrans 36.1 12 0.00053 17.2 1.6 22 167-188 783-804 (875) 21 2vpq_A Acetyl-COA carboxylase; 36.0 17 0.00071 16.4 2.2 27 70-96 271-298 (451) 22 2q9s_A Fatty acid-binding prot 35.5 23 0.00095 15.6 6.9 46 40-85 72-118 (155) 23 1ogy_A Periplasmic nitrate red 35.1 17 0.00073 16.3 2.2 21 167-187 731-751 (802) 24 1bwy_A Protein (heart fatty ac 34.7 23 0.00098 15.5 6.2 47 40-86 48-95 (132) 25 1dj7_B Ferredoxin thioredoxin 33.7 14 0.00057 17.0 1.4 28 106-133 26-57 (75) 26 1ulz_A Pyruvate carboxylase N- 30.3 17 0.0007 16.4 1.4 116 22-144 205-346 (451) 27 1eu1_A Dimethyl sulfoxide redu 30.2 24 0.00099 15.5 2.2 22 167-188 680-701 (780) 28 2a0a_A DER F 13; beta barrel, 29.4 29 0.0012 15.0 5.4 55 41-95 49-104 (131) 29 2csw_A Ubiquitin ligase protei 28.6 29 0.0012 14.9 3.6 54 63-116 55-109 (145) 30 1g8k_A Arsenite oxidase; molyb 28.5 23 0.00097 15.6 1.9 22 167-188 739-760 (825) 31 1tmo_A TMAO reductase, trimeth 28.3 26 0.0011 15.2 2.2 21 168-188 721-741 (829) 32 2iv2_X Formate dehydrogenase H 27.7 28 0.0012 15.1 2.2 21 168-188 620-640 (715) 33 1h0h_A Formate dehydrogenase ( 27.5 21 0.00089 15.8 1.6 22 167-188 893-914 (977) 34 1p6p_A Fatty acid-binding prot 25.0 34 0.0014 14.5 5.4 45 40-84 46-91 (125) 35 2nap_A Protein (periplasmic ni 24.5 26 0.0011 15.2 1.6 21 168-188 655-675 (723) 36 1ed7_A Chitinase A1, (CHBD-CHI 24.5 20 0.00086 15.9 1.0 26 8-33 7-32 (45) 37 3a0r_A Sensor protein; four he 24.1 36 0.0015 14.4 4.4 103 68-179 221-332 (349) 38 1mdc_A Insect fatty acid bindi 23.2 37 0.0016 14.3 5.8 46 40-85 48-94 (132) 39 2ivf_A Ethylbenzene dehydrogen 22.6 38 0.0016 14.2 2.2 21 168-188 886-906 (976) 40 1vyf_A SM14, 14 kDa fatty acid 21.3 40 0.0017 14.1 6.0 45 41-85 51-97 (135) 41 2e7z_A Acetylene hydratase AHY 20.1 43 0.0018 13.9 2.2 22 167-188 638-659 (727) 42 2q2g_A HSP40 protein, heat sho 20.0 30 0.0013 14.9 1.1 20 110-129 109-128 (180) No 1 >1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Probab=100.00 E-value=0 Score=484.88 Aligned_cols=186 Identities=32% Similarity=0.604 Sum_probs=184.7 Q ss_pred CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE Q ss_conf 23664321677589988937999998753688876389999998246871001342787200101056405789961988 Q gi|254781067|r 2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG 81 (189) Q Consensus 2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~ 81 (189) ||++|||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++++||+++|++|.|+++++++||||.||+. T Consensus 30 ~mi~a~dlkkG~~I~~dg~py~Vl~~~~~kpGkg~A~vr~KlKnL~tG~~~e~tf~s~ekve~a~le~~~~qyLY~Dg~~ 109 (215) T 1yby_A 30 LMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDL 109 (215) T ss_dssp -CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETTE T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEECCEEEEEEEEEEECCCC T ss_conf 34487876687899999999999998862499995289999998168983478974776110111343789999968998 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCE Q ss_conf 99994688764321154300133201378615689766777440158749999998285421310247700089937959 Q gi|254781067|r 82 FHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIR 161 (189) Q Consensus 82 ~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~ 161 (189) |+|||++||||++++++++|++.+||+||++|++++|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||++ T Consensus 110 ~~FMd~etyEQi~v~~d~ig~~~~~L~e~~~v~v~~~~~~~i~v~lP~~V~l~V~et~p~vKGdTas~~~K~A~LeTG~~ 189 (215) T 1yby_A 110 YYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGAS 189 (215) T ss_dssp EEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCE T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCE T ss_conf 89873877543233366641466521468507999926842100148739999998999655654678877489818999 Q ss_pred EECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 98474016887999988997240210 Q gi|254781067|r 162 TTVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 162 i~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) |+||+||++||+|+|||++|+|++|+ T Consensus 190 v~VP~FI~~Gd~IkV~T~~g~Y~~RV 215 (215) T 1yby_A 190 IKVPLFVNKGDIIRIDTRTGEYMERV 215 (215) T ss_dssp EEEETTCCTTCEEEEETTTTEEEEEC T ss_pred EEECCCCCCCCEEEEECCCCEEEECC T ss_conf 98488327999999989987067059 No 2 >3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Probab=100.00 E-value=0 Score=487.96 Aligned_cols=188 Identities=34% Similarity=0.570 Sum_probs=187.1 Q ss_pred CCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC Q ss_conf 92366432167758998893799999875368887638999999824687100134278720010105640578996198 Q gi|254781067|r 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE 80 (189) Q Consensus 1 m~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~ 80 (189) |+++++|+||+|++|++||+||+|++++|+|||||+||+|+|||||.||+++++||+++|++|.|+++++++||||.||+ T Consensus 4 Ma~~~~~dlkkG~~I~~dg~~~~V~~~~~~kpgkg~A~v~~klknl~tG~~~e~tf~s~e~ve~a~~e~~~~qylY~dg~ 83 (191) T 3a5z_B 4 MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGE 83 (191) T ss_dssp --CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSS T ss_pred CCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCC T ss_conf 45002775678889999999999999997659999608999999956898789996699889787898778799998898 Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCC Q ss_conf 89999468876432115430013320137861568976677744015874999999828542131024770008993795 Q gi|254781067|r 81 GFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDI 160 (189) Q Consensus 81 ~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~ 160 (189) .|+|||++||||++++++++|++.+||+||++|.++||+|+|++|+||++|+|+|++|+|++|||||++++|||+||||+ T Consensus 84 ~~~FMd~etyeQ~~l~~~~ig~~~~~l~e~~~v~i~~~~~~~i~v~lP~~V~l~V~~t~p~vkgdTa~~~~K~A~letG~ 163 (191) T 3a5z_B 84 FWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA 163 (191) T ss_dssp CEEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC------------------------ T ss_pred CEEEECCCCCCCEEECHHHHCCHHHCCCCCCEEEEEECCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCC T ss_conf 08998899955556026672612330257847999994684775137986999999999831331047887639991899 Q ss_pred EEECCCCCCCCCEEEEECCCCCEEHHCC Q ss_conf 9984740168879999889972402102 Q gi|254781067|r 161 RTTVPPHINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 161 ~i~VP~FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) +|+||+||++||+|+||||+|+|++||| T Consensus 164 ~v~VP~FI~~Gd~IkV~T~~g~Yv~R~K 191 (191) T 3a5z_B 164 VVKVPLFVQIGEVIKVDTRSGEYVSRVK 191 (191) T ss_dssp ---------------------------- T ss_pred EEEECCCCCCCCEEEEECCCCEEEHHCC T ss_conf 9995983369999999899976700249 No 3 >1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Probab=100.00 E-value=0 Score=468.78 Aligned_cols=184 Identities=28% Similarity=0.493 Sum_probs=180.8 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCEE Q ss_conf 36643216775899889379999987536888763899999982468710013427872001010564057899619889 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEGF 82 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~~ 82 (189) |++||+||+|++|++||+||+|++++|++||||+||+|+|||||.||+++++||+++|+||.|+++++++||||.||+.| T Consensus 1 Mi~a~dlkkG~~I~~dg~p~~V~~~~~~kpgkg~a~v~~klknl~tG~~~e~tf~s~d~ve~a~~~~~~~qylY~dgd~~ 80 (184) T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184) T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE T ss_pred CCCHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCE T ss_conf 98567667978999999999999988735998860799999983689718999759998988689878899999779978 Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEE Q ss_conf 99946887643211543001332013786156897667774401587499999982854213102477000899379599 Q gi|254781067|r 83 HFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRT 162 (189) Q Consensus 83 ~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i 162 (189) +|||++||||++++.+++++ .+||+||++|.+++|+++||+|+||++|+|+|++|||++||||+++++|||+||||++| T Consensus 81 ~FMd~etyeq~~l~~~~~~~-~~~l~e~~~~~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~s~~~K~A~letG~~v 159 (184) T 1ueb_A 81 VFMDLETYEQFAVPRSRVVG-AEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV 159 (184) T ss_dssp EEEETTTCCEEEEEGGGBTT-GGGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE T ss_pred EEEECCCCCHHCCHHHHHHH-HHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCEE T ss_conf 99607984110021656413-44224675178886288488752798899999977873115435788551999389999 Q ss_pred ECCCCCCCCCEEEEECCCCCEEHHC Q ss_conf 8474016887999988997240210 Q gi|254781067|r 163 TVPPHINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 163 ~VP~FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) +||+||++||+|+||||+|+|++|| T Consensus 160 ~VP~fI~~Gd~IkV~T~~g~Y~~RA 184 (184) T 1ueb_A 160 QVPLFVEPGEVIKVDTRTGEYVGRA 184 (184) T ss_dssp EEETTCCTTCEEEEETTTTEEEEEC T ss_pred EECCCCCCCCEEEEECCCCEEECCC T ss_conf 8698217999999989997050159 No 4 >1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Probab=100.00 E-value=1.9e-37 Score=248.84 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=119.7 Q ss_pred CCE--EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE Q ss_conf 923--6643216775899889379999987536888-7638999999824687100134278720010105640578996 Q gi|254781067|r 1 MVK--VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ 77 (189) Q Consensus 1 m~~--i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~ 77 (189) |++ |+||+||+|++|++||+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||. T Consensus 4 mat~~i~a~~lkkG~~i~~dg~p~~V~~~~~~kpGk~G~a~~~~k~k~l~tG~~~e~~~~~~e~ve~~~v~~~~~q~lY~ 83 (136) T 1bkb_A 4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSV 83 (136) T ss_dssp CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEE T ss_pred CCCCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEE T ss_conf 30127999997568899999999999999988588777438999999825896999981387588240484434899995 Q ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHH-HHCCCCCEEEEEEECCEEEEEC Q ss_conf 198899994688764321154300133-2013786156897667774401 Q gi|254781067|r 78 DQEGFHFMNPETYDQVTVSEEVIGDQK-VYFQEGMEVKLLIHEGVALSVE 126 (189) Q Consensus 78 dg~~~~FMd~etyeqi~i~~~~ig~~~-~fL~eg~~v~i~~~~~~~i~i~ 126 (189) ||+.|+|||+|||||++||.+.+|+.. .||.||++|+++.++|+.+-+. T Consensus 84 d~~~~~fMd~etyEq~~l~~~~vg~~~k~~l~eg~eV~v~~~~g~~~i~~ 133 (136) T 1bkb_A 84 SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR 133 (136) T ss_dssp CSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE T ss_pred CCCEEEEECCCCHHHEECCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEE T ss_conf 59999990499834178676785188997504999999999889799999 No 5 >1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} SCOP: b.34.5.2 b.40.4.5 Probab=100.00 E-value=9.1e-37 Score=244.69 Aligned_cols=124 Identities=22% Similarity=0.317 Sum_probs=117.8 Q ss_pred CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC Q ss_conf 236643216775899889379999987536888-7638999999824687100134278720010105640578996198 Q gi|254781067|r 2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE 80 (189) Q Consensus 2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~ 80 (189) ++|.||+||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||.||+ T Consensus 5 ~~i~~~~lk~G~~i~~~g~p~~V~~~~~~kpGk~G~a~~~~k~knl~tG~~~e~~~~~~e~ve~~~v~~~~~qylY~d~~ 84 (138) T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138) T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCC T ss_conf 69898897468999999999999999988698786418999999826796899998278842101476677799988599 Q ss_pred EEEEEECCCCCCCCCCHH--HHHHHHHHCCCCCEEEEEEECCE--EEEE Q ss_conf 899994688764321154--30013320137861568976677--7440 Q gi|254781067|r 81 GFHFMNPETYDQVTVSEE--VIGDQKVYFQEGMEVKLLIHEGV--ALSV 125 (189) Q Consensus 81 ~~~FMd~etyeqi~i~~~--~ig~~~~fL~eg~~v~i~~~~~~--~i~i 125 (189) .|+|||++||||++||.+ ++++...||+||++|++++|+|+ +|++ T Consensus 85 ~~~fMd~e~yEq~~l~~d~~l~~~~~~~l~eg~~V~v~~~~G~e~ii~~ 133 (138) T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIKIMRI 133 (138) T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEEEEEE T ss_pred CEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEE T ss_conf 3697169973013845623448999986249999999999998988999 No 6 >2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Probab=100.00 E-value=5.9e-35 Score=233.58 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=116.0 Q ss_pred CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC Q ss_conf 236643216775899889379999987536888-7638999999824687100134278720010105640578996198 Q gi|254781067|r 2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE 80 (189) Q Consensus 2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~ 80 (189) ++|++|+||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|++|.|+++++++||||.||+ T Consensus 9 ~~i~~~~lrkG~~i~~~g~p~~V~~~~~~k~GkrG~a~~~~k~knl~tG~~~e~~~~~~ekve~~~ie~~~~q~ly~d~~ 88 (136) T 2eif_A 9 KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGD 88 (136) T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETT T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEECCCEEEEEEEEEEECCC T ss_conf 79869996568999999998999999998688886408999999936896999998189700035366653799997599 Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEC Q ss_conf 8999946887643211543001332013786156897667774401 Q gi|254781067|r 81 GFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVE 126 (189) Q Consensus 81 ~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~ 126 (189) .|+|||+++|||++|| ++++..||+||++|++++++|+..-++ T Consensus 89 ~~~fMd~e~yeq~~l~---v~~~~~~l~eg~~v~v~~~~g~e~i~~ 131 (136) T 2eif_A 89 MVQIMDLQTYETLELP---IPEGIEGLEPGGEVEYIEAVGQYKITR 131 (136) T ss_dssp EEEEEETTTCCEEEEE---CCSCCTTCSTTCEEEEEEETTEEEEEE T ss_pred EEEEECCCCCEEEEEE---CCCHHHHCCCCCEEEEEEECCCEEEEE T ss_conf 8999259995788836---751365334999899999999499999 No 7 >3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Probab=100.00 E-value=1.1e-34 Score=232.01 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=118.4 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE Q ss_conf 36643216775899889379999987536888-76389999998246871001342787200101056405789961988 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG 81 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~ 81 (189) .+.|++||+|++|++||+||+|++++|+|||| |+|++|+++|||.||++++.+|+++|++|.|.++++++||||.||+. T Consensus 30 ~~qa~~lkkG~~i~idg~P~~Vv~~~~~KpGKhG~a~~rik~k~l~TG~~~e~tf~s~e~ve~a~vek~~~Q~lY~dg~~ 109 (167) T 3er0_A 30 PMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDGF 109 (167) T ss_dssp EEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTTTT T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCE T ss_conf 26788866799999999579999988337988764389999998468988899853898888779999888999965991 Q ss_pred EEEEECCCC--CCCCCCHHHHHHHHH-HCCCCCEEEEEEEC----CEEEEE-CCCC Q ss_conf 999946887--643211543001332-01378615689766----777440-1587 Q gi|254781067|r 82 FHFMNPETY--DQVTVSEEVIGDQKV-YFQEGMEVKLLIHE----GVALSV-EVPR 129 (189) Q Consensus 82 ~~FMd~ety--eqi~i~~~~ig~~~~-fL~eg~~v~i~~~~----~~~i~i-~lP~ 129 (189) |+|||+++| ||+.||.+.+++..+ ||.||++|.+.+++ +.+|++ ++|. T Consensus 110 ~~fMD~e~yt~eqi~l~~~~l~d~~k~~l~eg~ev~V~vi~~mG~e~vi~ik~~~~ 165 (167) T 3er0_A 110 LSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAISFKEAAR 165 (167) T ss_dssp CCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEEEECCCCC T ss_pred EEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEECCCC T ss_conf 79991799568877668889899999997489969999992499799899731467 No 8 >3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} Probab=100.00 E-value=2.4e-33 Score=223.79 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=115.2 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE Q ss_conf 36643216775899889379999987536888-76389999998246871001342787200101056405789961988 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG 81 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~ 81 (189) .|.||+||+|++|+++|+||+|++++|++||| |+|++|+|+|||.||++++++|+++|++|.|+++++++||||.|++. T Consensus 6 ~i~as~lkkG~~i~~~G~p~~V~~~~~~kpgk~G~a~v~~k~knl~tG~~~e~t~~~~d~ve~~~v~~~~~q~ly~d~~~ 85 (138) T 3cpf_A 6 PMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGY 85 (138) T ss_dssp EEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEETTE T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCE T ss_conf 87889976789999999999999999986867876699999999789999999856996998778998889999976997 Q ss_pred EEEEECCCC--CCCCCCHHHHHHHH-HHCCCCCEEEEEEE----CCEEEEEC Q ss_conf 999946887--64321154300133-20137861568976----67774401 Q gi|254781067|r 82 FHFMNPETY--DQVTVSEEVIGDQK-VYFQEGMEVKLLIH----EGVALSVE 126 (189) Q Consensus 82 ~~FMd~ety--eqi~i~~~~ig~~~-~fL~eg~~v~i~~~----~~~~i~i~ 126 (189) |+|||+++| ||+.|+.+.+|+.. .||.||++|.+.++ ++.+|++. T Consensus 86 ~~fMd~~~~~~e~i~l~~~~l~~~i~~~~~eg~~v~V~vi~~~g~e~vi~v~ 137 (138) T 3cpf_A 86 LSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 137 (138) T ss_dssp EEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEEETTEEEEEEEC T ss_pred EEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEE T ss_conf 9998169863589865878978999998648998999999018929999960 No 9 >3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Probab=99.98 E-value=8.3e-32 Score=214.30 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=111.9 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE Q ss_conf 36643216775899889379999987536888-76389999998246871001342787200101056405789961988 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG 81 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~ 81 (189) .+.|++||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++++.+|+++++++.|.++++++||||.|++. T Consensus 28 ~i~as~lkkG~~i~idg~pc~V~~~~~skpGKhG~A~~rik~kdi~tG~~~e~t~~s~d~ve~~~v~~~~~Q~ly~d~~~ 107 (167) T 3hks_A 28 PQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDG 107 (167) T ss_dssp EEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECTTS T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCC T ss_conf 67889966788999999999999999867877755179999997147957899704763001467898899999987897 Q ss_pred EEEEECCCCC---CCCC--CHHHHHHHHHHCCCCCEEEEEEECC----EEEEE Q ss_conf 9999468876---4321--1543001332013786156897667----77440 Q gi|254781067|r 82 FHFMNPETYD---QVTV--SEEVIGDQKVYFQEGMEVKLLIHEG----VALSV 125 (189) Q Consensus 82 ~~FMd~etye---qi~i--~~~~ig~~~~fL~eg~~v~i~~~~~----~~i~i 125 (189) |+|||+++|| |+.| +.+++++...||.||++|.|.+|+. .++++ T Consensus 108 ~~fMd~e~~et~E~i~l~~~~~l~~~~~~~l~eG~ev~V~~~~~mG~e~ii~v 160 (167) T 3hks_A 108 FVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAV 160 (167) T ss_dssp BEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEEETTEEEEEEE T ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEE T ss_conf 39999079808887614773157899998875899899999916996999999 No 10 >1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Probab=99.97 E-value=1.2e-29 Score=201.03 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=106.5 Q ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE Q ss_conf 36643216775899889379999987536888-76389999998246871001342787200101056405789961988 Q gi|254781067|r 3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG 81 (189) Q Consensus 3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~ 81 (189) .+.|++||+|++|+++|+||+|++++|+|||| |+|++|+++|||.||++++.+|++++++|.|+++++++||||.|++. T Consensus 30 ~~~a~~lkkG~~i~idG~P~~V~~~~~~kpGKhG~a~~ri~~kdl~TG~~~e~~~~s~d~ve~~~vek~~~q~ly~d~d~ 109 (174) T 1x6o_A 30 PLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANE 109 (174) T ss_dssp EEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECCS T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCC T ss_conf 77778876689999999899999898607998744799999998447958899843787744114877888999863864 Q ss_pred -------EEEEECCCCCCCCCCHHHH----HHHHHHCCCCCEEEEEEEC Q ss_conf -------9999468876432115430----0133201378615689766 Q gi|254781067|r 82 -------FHFMNPETYDQVTVSEEVI----GDQKVYFQEGMEVKLLIHE 119 (189) Q Consensus 82 -------~~FMd~etyeqi~i~~~~i----g~~~~fL~eg~~v~i~~~~ 119 (189) ++|||+++|+|+.|+.... .+...||.+|.+|.+.+++ T Consensus 110 ~~~~dg~~~fMD~etyeq~~l~~~~~~e~~~~ik~~~~eg~~v~V~v~~ 158 (174) T 1x6o_A 110 DPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174) T ss_dssp STTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE T ss_pred CCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEC T ss_conf 3334425899716984566440576603999999873089989999993 No 11 >1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Probab=99.31 E-value=9.7e-12 Score=91.40 Aligned_cols=122 Identities=14% Similarity=0.161 Sum_probs=86.2 Q ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEE-CCCC-CCCEEEEEEEECC-CCCCEEEEECCCCCEEEEEECCCEEEEEEEECC Q ss_conf 664321677589988937999998753-6888-7638999999824-687100134278720010105640578996198 Q gi|254781067|r 4 VIASAVRKGNVLDVDGKLYIVLVAKNF-HPGK-GTPITQVEMRRIS-DGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE 80 (189) Q Consensus 4 i~an~lk~G~~i~~dg~~~~V~~~~~~-kpgk-g~a~v~~klknL~-tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~ 80 (189) +.++.||+|..+.++|.||+|++...+ |||| |.|-+++-...+. +|++.+...++..+++.+.++++++|++..+++ T Consensus 35 ~q~~~LrkGgyv~Ikg~PCKVveisTS~KtGKHGhak~dIft~~~~e~~~k~~~~~Ps~~~~~vP~v~r~eyqlldI~dg 114 (176) T 1khi_A 35 IPCHHIRLGDILILQGRPCQVIRISTSAATGQHRYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDMQDG 114 (176) T ss_dssp EEGGGCCTTCEEEETTEEEEEEEEEECTTTCCEEEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCEEEEEEEEETT T ss_pred EECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEECCCEEEEEEEEEEEECC T ss_conf 35421110889999881068998862788984546889998611674366434757997302667436615799998189 Q ss_pred EEEEEECCCC--CCCCCCH-HHHHHHH-HHCCCCC-EEEEEEE----CCEEEEE Q ss_conf 8999946887--6432115-4300133-2013786-1568976----6777440 Q gi|254781067|r 81 GFHFMNPETY--DQVTVSE-EVIGDQK-VYFQEGM-EVKLLIH----EGVALSV 125 (189) Q Consensus 81 ~~~FMd~ety--eqi~i~~-~~ig~~~-~fL~eg~-~v~i~~~----~~~~i~i 125 (189) ...+||.+.+ |.+.+|. .-+++.+ .-+.+|- .+.+.++ ++.++++ T Consensus 115 ~lsLMd~~G~~keDl~lp~~~el~~~I~~~fe~gk~~v~VtVisamG~E~ii~~ 168 (176) T 1khi_A 115 SIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDM 168 (176) T ss_dssp EEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEEEE T ss_pred CEEEECCCCCEECCEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEE T ss_conf 289983799784121058821689999999867987589999821994678999 No 12 >3nr3_A PMP2 protein; structural genomics, structural genomics consortium, SGC, TR transport protein; HET: PLM CIT EPE; 1.95A {Homo sapiens} Probab=68.59 E-value=6.3 Score=19.01 Aligned_cols=47 Identities=6% Similarity=0.150 Sum_probs=35.0 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEEEE Q ss_conf 99999824687100134278720010105640578996-198899994 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHFMN 86 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~FMd 86 (189) +..++...+.+..+.+|+.++.+++..++-+.+.-.|. +|+..+..- T Consensus 70 ~~tikt~s~~kt~~~tF~lGeEfee~~~dG~~~k~t~t~eg~kL~~~~ 117 (153) T 3nr3_A 70 IITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQ 117 (153) T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEE T ss_pred EEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEE T ss_conf 999999779733898898898568876899789999999899999999 No 13 >2wut_A Myelin P2 protein; transport, lipid-binding, fatty acid binding protein, peripheral membrane protein; HET: PLM; 1.85A {Homo sapiens} PDB: 1pmp_A* 1yiv_A* Probab=63.49 E-value=8 Score=18.40 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=34.9 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEEEEC Q ss_conf 9999824687100134278720010105640578996-1988999946 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHFMNP 87 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~FMd~ 87 (189) ..++...+.+..+.+|+.++.+++-.++-+.++-.|. +|+..+.... T Consensus 51 ~~ikt~t~~k~~~~tF~lGeefee~~~~g~~~k~~~t~eg~kl~~~~~ 98 (133) T 2wut_A 51 ITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQR 98 (133) T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEEE T ss_pred EEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEE T ss_conf 999992797336888888888888768997899999997999999995 No 14 >2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... Probab=48.86 E-value=12 Score=17.25 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=19.6 Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCCCH Q ss_conf 4057899619889999468876432115 Q gi|254781067|r 70 QRFQFLYQDQEGFHFMNPETYDQVTVSE 97 (189) Q Consensus 70 ~~~qylY~dg~~~~FMd~etyeqi~i~~ 97 (189) -++||+|. ++.|+||...+==|.+.+- T Consensus 273 ~tvEfl~~-~~~~yflEvN~R~qvehpv 299 (449) T 2w70_A 273 GTFEFLFE-NGEFYFIEMNTRIQVEHPV 299 (449) T ss_dssp EEEEEEEE-TTEEEEEEEECSCCTTHHH T ss_pred CEEEEEEE-CCEEEEEECCCCCCCCCCE T ss_conf 05899998-9979998321466656540 No 15 >1g7n_A Adipocyte lipid-binding protein; fatty acid binding protein, beta barrel, protein engineering; 1.50A {Mus musculus} SCOP: b.60.1.2 PDB: 1g74_A 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* 2ans_A* 3hk1_A* 1a18_A* 1a2d_A* 1ab0_A 1acd_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* ... Probab=44.68 E-value=16 Score=16.51 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=34.8 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEE Q ss_conf 999998246871001342787200101056405789-9619889999 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFM 85 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FM 85 (189) ...++...+.+..+.+|+.++.+++..++-+.++-. ..||+..+.. T Consensus 48 ~~tikt~t~~kt~~~tF~lGeefee~~~dg~~~k~~~t~eg~klv~~ 94 (131) T 1g7n_A 48 LVTIRSESTFKNTEISFKLGVEFDEETVDGRKVKSIITLDGGALVQV 94 (131) T ss_dssp EEEEEECCSSCCEEEEECTTCCEEEECTTSCEEEEEEEEETTEEEEE T ss_pred EEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE T ss_conf 99999987885389999898478988899989999999979999999 No 16 >1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A* Probab=41.08 E-value=18 Score=16.16 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=34.6 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEE Q ss_conf 9999982468710013427872001010564057899-6198899994 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMN 86 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd 86 (189) ...++...+.+..+.+|+.|+.+|+..++-+.+.-.+ .||+....-- T Consensus 50 ~~~ikt~s~~kt~~~~F~lGeefee~~~dG~~~k~~~t~eG~~~~~~~ 97 (133) T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVHE 97 (133) T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEEE T ss_pred EEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEEEEE T ss_conf 999999768704899998787888888999799889999789689999 No 17 >1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A Probab=40.97 E-value=19 Score=16.15 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=35.3 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEE Q ss_conf 999998246871001342787200101056405789-9619889999 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFM 85 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FM 85 (189) ...++...+.+..+.+|+.++.+++..++-+.+.-. ..+|+.++.. T Consensus 48 ~~~ikt~t~~~t~~~~F~lG~efee~~~dg~~~k~~~t~eg~klv~~ 94 (131) T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHI 94 (131) T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE T ss_pred EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE T ss_conf 99999988871389999868768998589978989999979999999 No 18 >1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A* Probab=39.87 E-value=13 Score=17.06 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.1 Q ss_pred CCCCCCEEEEECCCCCEEHHCC Q ss_conf 0168879999889972402102 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) =|+.||.|+|.++.|+...||+ T Consensus 931 GIkdGD~V~V~s~~G~v~~~A~ 952 (1015) T 1kqf_A 931 GINNGDRVTVSSKRGFIRAVAV 952 (1015) T ss_dssp TCCTTCEEEEECSSCEEEEEEE T ss_pred CCCCCCEEEEECCCEEEEEEEE T ss_conf 9999999999869989999999 No 19 >2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} Probab=38.27 E-value=14 Score=16.82 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=38.2 Q ss_pred EECCCCCCCEEEEE-EE-ECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHH Q ss_conf 53688876389999-99-82468710013427872001010564057899619889999468876432115430013320 Q gi|254781067|r 29 NFHPGKGTPITQVE-MR-RISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVY 106 (189) Q Consensus 29 ~~kpgkg~a~v~~k-lk-nL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~f 106 (189) |+..||-.-+.+-. +. +|.||+.++. +.+.+ ....--|.+...|++|++++....-| T Consensus 9 ~~~~~~~~~~~k~~~~~v~LiTGRt~~Q-g~~~~---------~k~~~~Y~~~~~~i~inP~DA~~LGi----------- 67 (146) T 2ki8_A 9 HHSSGRENLYFQGHMLEVEVISGRTLNQ-GATVE---------EKLTEEYFNAVNYAEINEEDWNALGL----------- 67 (146) T ss_dssp CCCCCCCCCCCCCCCEEEEEEEECCSCC-SSCTT---------TTCSHHHHHSSSEEEECHHHHHHHTC----------- T ss_pred CCCCCCCCEECCCCEEEEEEEECCCHHH-HHHHH---------CCCCHHHCCCCEEEEECHHHHHHCCC----------- T ss_conf 3467731011147613899995651788-66453---------44776566757599999999988499----------- Q ss_pred CCCCCEEEEEEECCE Q ss_conf 137861568976677 Q gi|254781067|r 107 FQEGMEVKLLIHEGV 121 (189) Q Consensus 107 L~eg~~v~i~~~~~~ 121 (189) .+|..|.+.--.|. T Consensus 68 -~~Gd~V~V~s~~G~ 81 (146) T 2ki8_A 68 -QEGDRVKVKTEFGE 81 (146) T ss_dssp -CTTCEEEEECSSCE T ss_pred -CCCCEEEEECCCEE T ss_conf -98999999879978 No 20 >1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Probab=36.10 E-value=12 Score=17.20 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.0 Q ss_pred CCCCCCEEEEECCCCCEEHHCC Q ss_conf 0168879999889972402102 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) =|+.||.|+|-++.|+...||+ T Consensus 783 GI~dGD~V~V~n~~G~~~~~a~ 804 (875) T 1ti6_A 783 GIKNGDLIRAYNDRGSVILAAQ 804 (875) T ss_dssp TCCTTCEEEEEETTEEEEEEEE T ss_pred CCCCCCEEEEECCCEEEEEEEE T ss_conf 9998999999869979999999 No 21 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Probab=35.96 E-value=17 Score=16.41 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=20.4 Q ss_pred CEEEEEEE-ECCEEEEEECCCCCCCCCC Q ss_conf 40578996-1988999946887643211 Q gi|254781067|r 70 QRFQFLYQ-DQEGFHFMNPETYDQVTVS 96 (189) Q Consensus 70 ~~~qylY~-dg~~~~FMd~etyeqi~i~ 96 (189) -.++|+|. +++.|+||...+.=|.+-+ T Consensus 271 gtvEfl~d~~~~~~yflEvN~Rlqveh~ 298 (451) T 2vpq_A 271 GTIEFIYDLNDNKFYFMEMNTRIQVEHP 298 (451) T ss_dssp EEEEEEEETTTTEEEEEEEECSCCTTHH T ss_pred CEEEEEEECCCCCEEEEEECCCCCCCEE T ss_conf 2068999558995899972377677511 No 22 >2q9s_A Fatty acid-binding protein; beta clamshell, lipid binding protein; HET: EIC; 2.30A {Mus musculus} SCOP: b.60.1.2 PDB: 2qm9_A* Probab=35.50 E-value=23 Score=15.62 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=34.0 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEE Q ss_conf 999998246871001342787200101056405789-9619889999 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFM 85 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FM 85 (189) ...++...+.+..+.+|+.++.+++..++-+.++-. ..||+.++.. T Consensus 72 ~~tikt~t~~kt~~~tF~lGeEfee~~~dG~kvk~t~t~eG~kLv~~ 118 (155) T 2q9s_A 72 LVTIRSESTFKNTEISFKLGVEFDEITADDRKVKSIITLDGGALVQV 118 (155) T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE T ss_pred EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE T ss_conf 99999965774079999899768887689979989999969999999 No 23 >1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 Probab=35.11 E-value=17 Score=16.32 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=17.1 Q ss_pred CCCCCCEEEEECCCCCEEHHC Q ss_conf 016887999988997240210 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERV 187 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Ra 187 (189) =|+.||.|+|-+..|+...|+ T Consensus 731 GI~dGD~V~V~~~~G~i~~~~ 751 (802) T 1ogy_A 731 GLNRGSEVRVISRRGEIRTRL 751 (802) T ss_dssp TCCTTCEEEEECSSCEEEEEE T ss_pred CCCCCCEEEEECCCCEEEEEE T ss_conf 999999999988993499999 No 24 >1bwy_A Protein (heart fatty acid binding protein); intracellular lipid binding protein, heart muscle; NMR {Bos taurus} SCOP: b.60.1.2 PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* Probab=34.70 E-value=23 Score=15.55 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=35.7 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEE Q ss_conf 999998246871001342787200101056405789-96198899994 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMN 86 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd 86 (189) +..++...+.+..+.+|+.++.+++..++-+.+... ..+|+.++... T Consensus 48 ~~~ikt~t~~~t~~~~F~lGeefee~~~dg~~~k~~~t~eg~klv~~~ 95 (132) T 1bwy_A 48 TVIIKTQSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQ 95 (132) T ss_dssp EEEEEECCSSCCEEEEECTTEEEEEEETTTEEEEEEEEEETTEEEEEE T ss_pred EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEE T ss_conf 999999567723799998588478974899789899999799999999 No 25 >1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B Probab=33.71 E-value=14 Score=16.97 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=21.0 Q ss_pred HCCCCCE---E-EEEEECCEEEEECCCCEEEE Q ss_conf 0137861---5-68976677744015874999 Q gi|254781067|r 106 YFQEGME---V-KLLIHEGVALSVEVPRHVVF 133 (189) Q Consensus 106 fL~eg~~---v-~i~~~~~~~i~i~lP~~v~l 133 (189) |=..||+ . .+..|+|+|||..||-.|.+ T Consensus 26 fDl~G~eGeV~~~v~~wkGr~ISanlP~~V~F 57 (75) T 1dj7_B 26 FDLQGMEGEVAAVLTEWQGRPISANLPVLVKF 57 (75) T ss_dssp EECTTCEEEEEEECSEETTEECCCSSCEEEEE T ss_pred CCCCCCEEEEEEEEECCCCCEECCCCCEEEEE T ss_conf 45688777776787313796956997699997 No 26 >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=30.25 E-value=17 Score=16.44 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=54.1 Q ss_pred EEEEEEEEECCCCCCCEE-EEEEE--ECCCCCCEEEEECCCCCEE------EE------EE---CCCEEEEEEEECCEEE Q ss_conf 999998753688876389-99999--8246871001342787200------10------10---5640578996198899 Q gi|254781067|r 22 YIVLVAKNFHPGKGTPIT-QVEMR--RISDGVKVSNRWRTTEQVE------RA------FV---EDQRFQFLYQDQEGFH 83 (189) Q Consensus 22 ~~V~~~~~~kpgkg~a~v-~~klk--nL~tG~~~e~~f~~~ekve------~~------~i---e~~~~qylY~dg~~~~ 83 (189) ++-++.|-..-+.|.... --... --.+++.++..-...-.-+ .+ .+ .--.++|||..++.|+ T Consensus 205 ~rhiEvqvl~D~~Gnvi~l~erdcsiqrr~qk~ieeaPa~~l~~~~r~~i~~~A~~~a~avgy~g~gTvEfl~d~~~~~y 284 (451) T 1ulz_A 205 PKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLY 284 (451) T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEE T ss_pred CEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEE T ss_conf 47989999996899889976404667646777641467986899999999999999999849711115899983899879 Q ss_pred EEECCCCCCCCCC-------HHHHHHHHHHCCCCCEEEEEEECCEEEEECC-CCEEEEEEEECCCCCCC Q ss_conf 9946887643211-------5430013320137861568976677744015-87499999982854213 Q gi|254781067|r 84 FMNPETYDQVTVS-------EEVIGDQKVYFQEGMEVKLLIHEGVALSVEV-PRHVVFTVIDTEPSSKG 144 (189) Q Consensus 84 FMd~etyeqi~i~-------~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~l-P~~v~l~V~~t~p~~kG 144 (189) ||...+-=|.+-+ -|++..+.. |..|..+... ++ .+.. ...+++.+ ++|+..++ T Consensus 285 FlE~NtRlQVEh~vTE~vtGiDlV~~qi~-iA~G~~l~~~--~~---~~~~~g~aie~Ri-~aEdp~~~ 346 (451) T 1ulz_A 285 FIEMNTRIQVEHPVSEMVTGIDIVKWQIK-IAAGEPLTIK--QE---DVKFNGYAIECRI-NAEDPKKN 346 (451) T ss_dssp EEEEECSCCTTHHHHHHHHCCCHHHHHHH-HHTTCCCCCC--GG---GCCCCSEEEEEEE-ESEEGGGT T ss_pred EEECCCCCCCCCCEEEEEECCHHHHHHHH-HHCCCCCCCC--CC---CCCCCCEEEEEEE-EECCCCCC T ss_conf 99624666777530110007559999999-8679988985--02---5454560688876-30377666 No 27 >1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A* Probab=30.18 E-value=24 Score=15.52 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.2 Q ss_pred CCCCCCEEEEECCCCCEEHHCC Q ss_conf 0168879999889972402102 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) =|+.||.|+|.++.|+...||+ T Consensus 680 GI~dGD~V~V~s~~G~i~~~a~ 701 (780) T 1eu1_A 680 GIADGDVLRVFNDRGQILVGAK 701 (780) T ss_dssp TCCTTCEEEEECSSCEEEEEEE T ss_pred CCCCCCEEEEECCCEEEEEEEE T ss_conf 9998999999879979999999 No 28 >2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2 Probab=29.44 E-value=29 Score=15.01 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=36.9 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCC Q ss_conf 999982468710013427872001010564057899-6198899994688764321 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTV 95 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i 95 (189) ..++...+.+..+.+|+.++.+++..++-+.+.-.+ .||+......+....+..+ T Consensus 49 ~tikt~t~~kt~~~~F~lG~efee~~~dG~~~k~~~t~egd~~~~~~~~~~k~~~~ 104 (131) T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQTQFGDKEVKI 104 (131) T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEEEECSSSCEEE T ss_pred EEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEE T ss_conf 99999137706899998897678887999899999999479989999869984799 No 29 >2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Probab=28.60 E-value=29 Score=14.92 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=37.7 Q ss_pred EEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHH-HHHCCCCCEEEEE Q ss_conf 01010564057899619889999468876432115430013-3201378615689 Q gi|254781067|r 63 ERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQ-KVYFQEGMEVKLL 116 (189) Q Consensus 63 e~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~-~~fL~eg~~v~i~ 116 (189) +...+.++.+...+..+..|+..|..+-.-..|+..-|... ..-|.+|..+.+- T Consensus 55 ~~~~VSR~Ha~i~~~~~g~~~i~Dl~S~NGt~vNg~~l~~~~~~~L~~GD~I~iG 109 (145) T 2csw_A 55 CPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG 109 (145) T ss_dssp CGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCBTCCEECCSSCCEEES T ss_pred CCCCCCHHHEEEEECCCCEEEEEECCCCCCEEECCEECCCCCEEECCCCCEEEEC T ss_conf 5673744795999899997999989988875999999689961799999999969 No 30 >1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A* Probab=28.50 E-value=23 Score=15.58 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.6 Q ss_pred CCCCCCEEEEECCCCCEEHHCC Q ss_conf 0168879999889972402102 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) =|+.||.|+|.++.|+-..||+ T Consensus 739 GI~~GD~V~V~s~~G~v~~~a~ 760 (825) T 1g8k_A 739 DVTGGDIVEVYNDFGSTFAMVY 760 (825) T ss_dssp TCCTTEEEEEECSSCEEEEEEE T ss_pred CCCCCCEEEEECCCEEEEEEEE T ss_conf 9999999999869989999999 No 31 >1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1 Probab=28.35 E-value=26 Score=15.21 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=15.2 Q ss_pred CCCCCEEEEECCCCCEEHHCC Q ss_conf 168879999889972402102 Q gi|254781067|r 168 INIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 168 I~~Gd~IkV~T~~g~Y~~Rak 188 (189) |+.||.|+|-++.|+...||+ T Consensus 721 I~dGD~V~V~s~~G~v~~~a~ 741 (829) T 1tmo_A 721 IKDGDIVRVFNDRGQLLAGAV 741 (829) T ss_dssp CCTTCEEEEECSSCEEEEEEE T ss_pred CCCCCEEEEECCCEEEEEEEE T ss_conf 999999999879889999999 No 32 >2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Probab=27.70 E-value=28 Score=15.10 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=13.1 Q ss_pred CCCCCEEEEECCCCCEEHHCC Q ss_conf 168879999889972402102 Q gi|254781067|r 168 INIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 168 I~~Gd~IkV~T~~g~Y~~Rak 188 (189) |+.||.|+|.++.|+...+|+ T Consensus 620 I~dGD~V~v~s~~G~~~~~a~ 640 (715) T 2iv2_X 620 IEDEALVWVHSRKGKIITRAQ 640 (715) T ss_dssp CCTTCEEEEECSSCEEEEEEE T ss_pred CCCCCEEEEECCCEEEEEEEE T ss_conf 999699999889988999999 No 33 >1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1 Probab=27.49 E-value=21 Score=15.79 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.4 Q ss_pred CCCCCCEEEEECCCCCEEHHCC Q ss_conf 0168879999889972402102 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) =|+.||.|+|-++.|+-..||. T Consensus 893 GIkdGD~V~V~s~~G~v~~~A~ 914 (977) T 1h0h_A 893 GIKNGDKVILESVRGKLWAKAI 914 (977) T ss_dssp TCCTTCEEEEEETTEEEEEEEE T ss_pred CCCCCCEEEEECCCEEEEEEEE T ss_conf 9998999999879989999999 No 34 >1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2 Probab=25.02 E-value=34 Score=14.52 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=34.5 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEE Q ss_conf 99999824687100134278720010105640578996-1988999 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHF 84 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~F 84 (189) ...++...+.+..+.+|+.|+.+++..++-+.+.-.+. +|+.++. T Consensus 46 ~~ti~t~t~~kt~~~tF~lGeefee~~~dg~~~k~t~t~eg~kLv~ 91 (125) T 1p6p_A 46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125) T ss_dssp EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE T ss_pred EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEE T ss_conf 9999997278318999977875788779998999999998999999 No 35 >2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Probab=24.49 E-value=26 Score=15.24 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=14.4 Q ss_pred CCCCCEEEEECCCCCEEHHCC Q ss_conf 168879999889972402102 Q gi|254781067|r 168 INIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 168 I~~Gd~IkV~T~~g~Y~~Rak 188 (189) |+.||.|+|.++.|+...+|+ T Consensus 655 i~dGD~V~V~n~~G~v~~~v~ 675 (723) T 2nap_A 655 IKHGDSVIVETRRDAMELPAR 675 (723) T ss_dssp CCTTCEEEEEETTEEEEEEEE T ss_pred CCCCCEEEEEECCEEEEEEEE T ss_conf 999899999938948999999 No 36 >1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1 Probab=24.48 E-value=20 Score=15.90 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=21.9 Q ss_pred HCCCCCEEEECCEEEEEEEEEEECCC Q ss_conf 21677589988937999998753688 Q gi|254781067|r 8 AVRKGNVLDVDGKLYIVLVAKNFHPG 33 (189) Q Consensus 8 ~lk~G~~i~~dg~~~~V~~~~~~kpg 33 (189) .-+.|..+.++|..|+|+-...+.+| T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~HTs~~~ 32 (45) T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLAG 32 (45) T ss_dssp EECTTCCEEETTEEECBCSCEEECTT T ss_pred EEECCCEEEECCEEEEEEECCCCCCC T ss_conf 58189999989918899753124588 No 37 >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} Probab=24.09 E-value=36 Score=14.41 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=63.7 Q ss_pred CCCEEEEE--EEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCC Q ss_conf 56405789--9619889999468876432115430013320137861568976677744015874999999828542131 Q gi|254781067|r 68 EDQRFQFL--YQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQ 145 (189) Q Consensus 68 e~~~~qyl--Y~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~ 145 (189) ..+..++. +.+..-+++.|..-.+|+-. +++.++.+|..++-.|.+.... .+..+.+.|.++-||+.-+ T Consensus 221 ~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~--NLl~NAi~~~~~~g~I~v~~~~-------~~~~v~i~V~D~G~Gi~~~ 291 (349) T 3a0r_A 221 RKMNIDFCFETDNEDLRVEADRTRIKQVLI--NLVQNAIEATGENGKIKITSED-------MYTKVRVSVWNSGPPIPEE 291 (349) T ss_dssp TTTTCCCEEEESCSCCEEEECHHHHHHHHH--HHHTHHHHTTCTTCCEEEEEEE-------ETTEEEEEEEEESCCCCGG T ss_pred HHCCCEEEEECCCCCEEEEECHHHHHHHHH--HHHHHHHHHCCCCCEEEEEEEE-------CCCEEEEEEEECCCCCCHH T ss_conf 866918999727887089985789999999--9999999976799669999995-------3548999999789998989 Q ss_pred CCCCCEEEEE----EECCCEEE-CCCCCC--CCCEEEEECC Q ss_conf 0247700089----93795998-474016--8879999889 Q gi|254781067|r 146 TVTASYKPAI----LSNDIRTT-VPPHIN--IGDDIVILTE 179 (189) Q Consensus 146 t~~~~~K~A~----letG~~i~-VP~FI~--~Gd~IkV~T~ 179 (189) .......|=. =-||+-+- |=.+++ -|-.|.+.+. T Consensus 292 ~~~~iFepF~ttk~~GtGLGL~i~k~iv~~~hgG~i~~~s~ 332 (349) T 3a0r_A 292 LKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENR 332 (349) T ss_dssp GGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEEC T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 99872699631898973557999999999848998999977 No 38 >1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2 Probab=23.15 E-value=37 Score=14.30 Aligned_cols=46 Identities=7% Similarity=0.111 Sum_probs=34.9 Q ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEE Q ss_conf 9999982468710013427872001010564057899-619889999 Q gi|254781067|r 40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFM 85 (189) Q Consensus 40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FM 85 (189) ...++...+.+..+.+|+.++.+|+..++-+.++..+ .||+-++.. T Consensus 48 ~~tikt~t~~kt~~~tF~lG~efee~~~dG~k~k~~~t~eg~kLv~~ 94 (132) T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTHV 94 (132) T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEEE T ss_pred EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE T ss_conf 99999972771389999689767888799979999899989999999 No 39 >2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} Probab=22.60 E-value=38 Score=14.23 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.0 Q ss_pred CCCCCEEEEECCCCCEEHHCC Q ss_conf 168879999889972402102 Q gi|254781067|r 168 INIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 168 I~~Gd~IkV~T~~g~Y~~Rak 188 (189) |+.||.|+|-++.|+-..||+ T Consensus 886 I~dGD~V~V~n~~G~v~~~a~ 906 (976) T 2ivf_A 886 IKDGDMAKLFNDFADCEIMVR 906 (976) T ss_dssp CCTTCEEEEECSSCEEEEEEE T ss_pred CCCCCEEEEEECCEEEEEEEE T ss_conf 998999999838989999999 No 40 >1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A Probab=21.33 E-value=40 Score=14.07 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=33.2 Q ss_pred EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCE-EEEE Q ss_conf 999982468710013427872001010564057899-61988-9999 Q gi|254781067|r 41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEG-FHFM 85 (189) Q Consensus 41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~-~~FM 85 (189) ..++...+.+..+.+|+.++.+|+..++-+.++-.+ .||+. .+.. T Consensus 51 ~~ikt~s~~kt~~~~F~lG~efee~~~dg~~vk~~~~~egd~~~~~~ 97 (135) T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQT 97 (135) T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEEE T ss_pred EEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCEEEEE T ss_conf 99999617704899999687889886999899889998689899999 No 41 >2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} Probab=20.09 E-value=43 Score=13.91 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=16.9 Q ss_pred CCCCCCEEEEECCCCCEEHHCC Q ss_conf 0168879999889972402102 Q gi|254781067|r 167 HINIGDDIVILTEDNSYVERVK 188 (189) Q Consensus 167 FI~~Gd~IkV~T~~g~Y~~Rak 188 (189) =|+.||.|+|.++.|+...+|+ T Consensus 638 Gi~dGD~V~V~s~~G~v~~~a~ 659 (727) T 2e7z_A 638 GLPSGEWIWVETTHGRLKLLLK 659 (727) T ss_dssp TCCTTSEEEEECSSCEEEEEEE T ss_pred CCCCCCEEEEECCCEEEEEEEE T ss_conf 9999999999739989999999 No 42 >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Probab=20.02 E-value=30 Score=14.90 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=10.0 Q ss_pred CCEEEEEEECCEEEEECCCC Q ss_conf 86156897667774401587 Q gi|254781067|r 110 GMEVKLLIHEGVALSVEVPR 129 (189) Q Consensus 110 g~~v~i~~~~~~~i~i~lP~ 129 (189) |.++.+...+|+.+.+.+|. T Consensus 109 G~~~~i~~ldG~~i~i~i~~ 128 (180) T 2q2g_A 109 GFTCPVTTLDNRNLQIPIKE 128 (180) T ss_dssp CEEEEEECTTCCEEEEEECS T ss_pred CCEEEEECCCCCCEEEECCC T ss_conf 98999821565530662298 Done!