Query         gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 189
No_of_seqs    126 out of 1788
Neff          6.0 
Searched_HMMs 23785
Date          Wed Jun  1 01:17:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781067.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1yby_A Translation elongation  100.0       0       0  484.9  22.7  186    2-187    30-215 (215)
  2 3a5z_B EF-P, elongation factor 100.0       0       0  488.0  12.6  188    1-188     4-191 (191)
  3 1ueb_A EF-P, TT0860, elongatio 100.0       0       0  468.8  23.6  184    3-187     1-184 (184)
  4 1bkb_A Translation initiation  100.0 1.9E-37   8E-42  248.8  16.7  126    1-126     4-133 (136)
  5 1iz6_A Initiation factor 5A; S 100.0 9.1E-37 3.8E-41  244.7  16.4  124    2-125     5-133 (138)
  6 2eif_A IF-5A, protein (eukaryo 100.0 5.9E-35 2.5E-39  233.6  16.1  122    2-126     9-131 (136)
  7 3er0_A Eukaryotic translation  100.0 1.1E-34 4.5E-39  232.0  10.6  127    3-129    30-165 (167)
  8 3cpf_A Eukaryotic translation  100.0 2.4E-33 9.9E-38  223.8  14.8  124    3-126     6-137 (138)
  9 3hks_A EIF-5A-2, eukaryotic tr 100.0 8.3E-32 3.5E-36  214.3  15.0  123    3-125    28-160 (167)
 10 1x6o_A Eukaryotic initiation f 100.0 1.2E-29 5.1E-34  201.0  14.4  117    3-119    30-158 (174)
 11 1khi_A HEX1; membrane sealing,  99.3 9.7E-12 4.1E-16   91.4   9.5  122    4-125    35-168 (176)
 12 3nr3_A PMP2 protein; structura  68.6     6.3 0.00027   19.0   6.7   47   40-86     70-117 (153)
 13 2wut_A Myelin P2 protein; tran  63.5       8 0.00033   18.4   5.9   47   41-87     51-98  (133)
 14 2w70_A Biotin carboxylase; lig  48.9      12 0.00052   17.2   3.2   27   70-97    273-299 (449)
 15 1g7n_A Adipocyte lipid-binding  44.7      16 0.00068   16.5   6.9   46   40-85     48-94  (131)
 16 1ftp_A Muscle fatty acid bindi  41.1      18 0.00078   16.2   5.8   47   40-86     50-97  (133)
 17 1fdq_A Fatty acid-binding prot  41.0      19 0.00078   16.2   5.7   46   40-85     48-94  (131)
 18 1kqf_A FDH-N, formate dehydrog  39.9      13 0.00055   17.1   2.2   22  167-188   931-952 (1015)
 19 2ki8_A Tungsten formylmethanof  38.3      14 0.00061   16.8   2.2   71   29-121     9-81  (146)
 20 1ti6_A Pyrogallol hydroxytrans  36.1      12 0.00053   17.2   1.6   22  167-188   783-804 (875)
 21 2vpq_A Acetyl-COA carboxylase;  36.0      17 0.00071   16.4   2.2   27   70-96    271-298 (451)
 22 2q9s_A Fatty acid-binding prot  35.5      23 0.00095   15.6   6.9   46   40-85     72-118 (155)
 23 1ogy_A Periplasmic nitrate red  35.1      17 0.00073   16.3   2.2   21  167-187   731-751 (802)
 24 1bwy_A Protein (heart fatty ac  34.7      23 0.00098   15.5   6.2   47   40-86     48-95  (132)
 25 1dj7_B Ferredoxin thioredoxin   33.7      14 0.00057   17.0   1.4   28  106-133    26-57  (75)
 26 1ulz_A Pyruvate carboxylase N-  30.3      17  0.0007   16.4   1.4  116   22-144   205-346 (451)
 27 1eu1_A Dimethyl sulfoxide redu  30.2      24 0.00099   15.5   2.2   22  167-188   680-701 (780)
 28 2a0a_A DER F 13; beta barrel,   29.4      29  0.0012   15.0   5.4   55   41-95     49-104 (131)
 29 2csw_A Ubiquitin ligase protei  28.6      29  0.0012   14.9   3.6   54   63-116    55-109 (145)
 30 1g8k_A Arsenite oxidase; molyb  28.5      23 0.00097   15.6   1.9   22  167-188   739-760 (825)
 31 1tmo_A TMAO reductase, trimeth  28.3      26  0.0011   15.2   2.2   21  168-188   721-741 (829)
 32 2iv2_X Formate dehydrogenase H  27.7      28  0.0012   15.1   2.2   21  168-188   620-640 (715)
 33 1h0h_A Formate dehydrogenase (  27.5      21 0.00089   15.8   1.6   22  167-188   893-914 (977)
 34 1p6p_A Fatty acid-binding prot  25.0      34  0.0014   14.5   5.4   45   40-84     46-91  (125)
 35 2nap_A Protein (periplasmic ni  24.5      26  0.0011   15.2   1.6   21  168-188   655-675 (723)
 36 1ed7_A Chitinase A1, (CHBD-CHI  24.5      20 0.00086   15.9   1.0   26    8-33      7-32  (45)
 37 3a0r_A Sensor protein; four he  24.1      36  0.0015   14.4   4.4  103   68-179   221-332 (349)
 38 1mdc_A Insect fatty acid bindi  23.2      37  0.0016   14.3   5.8   46   40-85     48-94  (132)
 39 2ivf_A Ethylbenzene dehydrogen  22.6      38  0.0016   14.2   2.2   21  168-188   886-906 (976)
 40 1vyf_A SM14, 14 kDa fatty acid  21.3      40  0.0017   14.1   6.0   45   41-85     51-97  (135)
 41 2e7z_A Acetylene hydratase AHY  20.1      43  0.0018   13.9   2.2   22  167-188   638-659 (727)
 42 2q2g_A HSP40 protein, heat sho  20.0      30  0.0013   14.9   1.1   20  110-129   109-128 (180)

No 1  
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00  E-value=0  Score=484.88  Aligned_cols=186  Identities=32%  Similarity=0.604  Sum_probs=184.7

Q ss_pred             CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE
Q ss_conf             23664321677589988937999998753688876389999998246871001342787200101056405789961988
Q gi|254781067|r    2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG   81 (189)
Q Consensus         2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~   81 (189)
                      ||++|||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++++||+++|++|.|+++++++||||.||+.
T Consensus        30 ~mi~a~dlkkG~~I~~dg~py~Vl~~~~~kpGkg~A~vr~KlKnL~tG~~~e~tf~s~ekve~a~le~~~~qyLY~Dg~~  109 (215)
T 1yby_A           30 LMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDL  109 (215)
T ss_dssp             -CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETTE
T ss_pred             EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEECCEEEEEEEEEEECCCC
T ss_conf             34487876687899999999999998862499995289999998168983478974776110111343789999968998


Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCE
Q ss_conf             99994688764321154300133201378615689766777440158749999998285421310247700089937959
Q gi|254781067|r   82 FHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIR  161 (189)
Q Consensus        82 ~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~  161 (189)
                      |+|||++||||++++++++|++.+||+||++|++++|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||++
T Consensus       110 ~~FMd~etyEQi~v~~d~ig~~~~~L~e~~~v~v~~~~~~~i~v~lP~~V~l~V~et~p~vKGdTas~~~K~A~LeTG~~  189 (215)
T 1yby_A          110 YYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGAS  189 (215)
T ss_dssp             EEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETTSCE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCE
T ss_conf             89873877543233366641466521468507999926842100148739999998999655654678877489818999


Q ss_pred             EECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             98474016887999988997240210
Q gi|254781067|r  162 TTVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       162 i~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      |+||+||++||+|+|||++|+|++|+
T Consensus       190 v~VP~FI~~Gd~IkV~T~~g~Y~~RV  215 (215)
T 1yby_A          190 IKVPLFVNKGDIIRIDTRTGEYMERV  215 (215)
T ss_dssp             EEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEECCCCCCCCEEEEECCCCEEEECC
T ss_conf             98488327999999989987067059


No 2  
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00  E-value=0  Score=487.96  Aligned_cols=188  Identities=34%  Similarity=0.570  Sum_probs=187.1

Q ss_pred             CCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC
Q ss_conf             92366432167758998893799999875368887638999999824687100134278720010105640578996198
Q gi|254781067|r    1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE   80 (189)
Q Consensus         1 m~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~   80 (189)
                      |+++++|+||+|++|++||+||+|++++|+|||||+||+|+|||||.||+++++||+++|++|.|+++++++||||.||+
T Consensus         4 Ma~~~~~dlkkG~~I~~dg~~~~V~~~~~~kpgkg~A~v~~klknl~tG~~~e~tf~s~e~ve~a~~e~~~~qylY~dg~   83 (191)
T 3a5z_B            4 MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGE   83 (191)
T ss_dssp             --CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSS
T ss_pred             CCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCC
T ss_conf             45002775678889999999999999997659999608999999956898789996699889787898778799998898


Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             89999468876432115430013320137861568976677744015874999999828542131024770008993795
Q gi|254781067|r   81 GFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDI  160 (189)
Q Consensus        81 ~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~  160 (189)
                      .|+|||++||||++++++++|++.+||+||++|.++||+|+|++|+||++|+|+|++|+|++|||||++++|||+||||+
T Consensus        84 ~~~FMd~etyeQ~~l~~~~ig~~~~~l~e~~~v~i~~~~~~~i~v~lP~~V~l~V~~t~p~vkgdTa~~~~K~A~letG~  163 (191)
T 3a5z_B           84 FWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA  163 (191)
T ss_dssp             CEEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC------------------------
T ss_pred             CEEEECCCCCCCEEECHHHHCCHHHCCCCCCEEEEEECCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf             08998899955556026672612330257847999994684775137986999999999831331047887639991899


Q ss_pred             EEECCCCCCCCCEEEEECCCCCEEHHCC
Q ss_conf             9984740168879999889972402102
Q gi|254781067|r  161 RTTVPPHINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       161 ~i~VP~FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      +|+||+||++||+|+||||+|+|++|||
T Consensus       164 ~v~VP~FI~~Gd~IkV~T~~g~Yv~R~K  191 (191)
T 3a5z_B          164 VVKVPLFVQIGEVIKVDTRSGEYVSRVK  191 (191)
T ss_dssp             ----------------------------
T ss_pred             EEEECCCCCCCCEEEEECCCCEEEHHCC
T ss_conf             9995983369999999899976700249


No 3  
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00  E-value=0  Score=468.78  Aligned_cols=184  Identities=28%  Similarity=0.493  Sum_probs=180.8

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCEE
Q ss_conf             36643216775899889379999987536888763899999982468710013427872001010564057899619889
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEGF   82 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgkg~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~~   82 (189)
                      |++||+||+|++|++||+||+|++++|++||||+||+|+|||||.||+++++||+++|+||.|+++++++||||.||+.|
T Consensus         1 Mi~a~dlkkG~~I~~dg~p~~V~~~~~~kpgkg~a~v~~klknl~tG~~~e~tf~s~d~ve~a~~~~~~~qylY~dgd~~   80 (184)
T 1ueb_A            1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM   80 (184)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred             CCCHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCE
T ss_conf             98567667978999999999999988735998860799999983689718999759998988689878899999779978


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEE
Q ss_conf             99946887643211543001332013786156897667774401587499999982854213102477000899379599
Q gi|254781067|r   83 HFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRT  162 (189)
Q Consensus        83 ~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~t~~~~~K~A~letG~~i  162 (189)
                      +|||++||||++++.+++++ .+||+||++|.+++|+++||+|+||++|+|+|++|||++||||+++++|||+||||++|
T Consensus        81 ~FMd~etyeq~~l~~~~~~~-~~~l~e~~~~~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~s~~~K~A~letG~~v  159 (184)
T 1ueb_A           81 VFMDLETYEQFAVPRSRVVG-AEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV  159 (184)
T ss_dssp             EEEETTTCCEEEEEGGGBTT-GGGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE
T ss_pred             EEEECCCCCHHCCHHHHHHH-HHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCEE
T ss_conf             99607984110021656413-44224675178886288488752798899999977873115435788551999389999


Q ss_pred             ECCCCCCCCCEEEEECCCCCEEHHC
Q ss_conf             8474016887999988997240210
Q gi|254781067|r  163 TVPPHINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       163 ~VP~FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      +||+||++||+|+||||+|+|++||
T Consensus       160 ~VP~fI~~Gd~IkV~T~~g~Y~~RA  184 (184)
T 1ueb_A          160 QVPLFVEPGEVIKVDTRTGEYVGRA  184 (184)
T ss_dssp             EEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EECCCCCCCCEEEEECCCCEEECCC
T ss_conf             8698217999999989997050159


No 4  
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00  E-value=1.9e-37  Score=248.84  Aligned_cols=126  Identities=20%  Similarity=0.253  Sum_probs=119.7

Q ss_pred             CCE--EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE
Q ss_conf             923--6643216775899889379999987536888-7638999999824687100134278720010105640578996
Q gi|254781067|r    1 MVK--VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ   77 (189)
Q Consensus         1 m~~--i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~   77 (189)
                      |++  |+||+||+|++|++||+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||.
T Consensus         4 mat~~i~a~~lkkG~~i~~dg~p~~V~~~~~~kpGk~G~a~~~~k~k~l~tG~~~e~~~~~~e~ve~~~v~~~~~q~lY~   83 (136)
T 1bkb_A            4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSV   83 (136)
T ss_dssp             CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEE
T ss_pred             CCCCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEE
T ss_conf             30127999997568899999999999999988588777438999999825896999981387588240484434899995


Q ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHH-HHCCCCCEEEEEEECCEEEEEC
Q ss_conf             198899994688764321154300133-2013786156897667774401
Q gi|254781067|r   78 DQEGFHFMNPETYDQVTVSEEVIGDQK-VYFQEGMEVKLLIHEGVALSVE  126 (189)
Q Consensus        78 dg~~~~FMd~etyeqi~i~~~~ig~~~-~fL~eg~~v~i~~~~~~~i~i~  126 (189)
                      ||+.|+|||+|||||++||.+.+|+.. .||.||++|+++.++|+.+-+.
T Consensus        84 d~~~~~fMd~etyEq~~l~~~~vg~~~k~~l~eg~eV~v~~~~g~~~i~~  133 (136)
T 1bkb_A           84 SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR  133 (136)
T ss_dssp             CSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEECCCCHHHEECCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEE
T ss_conf             59999990499834178676785188997504999999999889799999


No 5  
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} SCOP: b.34.5.2 b.40.4.5
Probab=100.00  E-value=9.1e-37  Score=244.69  Aligned_cols=124  Identities=22%  Similarity=0.317  Sum_probs=117.8

Q ss_pred             CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC
Q ss_conf             236643216775899889379999987536888-7638999999824687100134278720010105640578996198
Q gi|254781067|r    2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE   80 (189)
Q Consensus         2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~   80 (189)
                      ++|.||+||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||.||+
T Consensus         5 ~~i~~~~lk~G~~i~~~g~p~~V~~~~~~kpGk~G~a~~~~k~knl~tG~~~e~~~~~~e~ve~~~v~~~~~qylY~d~~   84 (138)
T 1iz6_A            5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD   84 (138)
T ss_dssp             EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred             EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCC
T ss_conf             69898897468999999999999999988698786418999999826796899998278842101476677799988599


Q ss_pred             EEEEEECCCCCCCCCCHH--HHHHHHHHCCCCCEEEEEEECCE--EEEE
Q ss_conf             899994688764321154--30013320137861568976677--7440
Q gi|254781067|r   81 GFHFMNPETYDQVTVSEE--VIGDQKVYFQEGMEVKLLIHEGV--ALSV  125 (189)
Q Consensus        81 ~~~FMd~etyeqi~i~~~--~ig~~~~fL~eg~~v~i~~~~~~--~i~i  125 (189)
                      .|+|||++||||++||.+  ++++...||+||++|++++|+|+  +|++
T Consensus        85 ~~~fMd~e~yEq~~l~~d~~l~~~~~~~l~eg~~V~v~~~~G~e~ii~~  133 (138)
T 1iz6_A           85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIKIMRI  133 (138)
T ss_dssp             EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEEEEEE
T ss_pred             CEEEECCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEE
T ss_conf             3697169973013845623448999986249999999999998988999


No 6  
>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00  E-value=5.9e-35  Score=233.58  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=116.0

Q ss_pred             CEEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECC
Q ss_conf             236643216775899889379999987536888-7638999999824687100134278720010105640578996198
Q gi|254781067|r    2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE   80 (189)
Q Consensus         2 ~~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~   80 (189)
                      ++|++|+||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|++|.|+++++++||||.||+
T Consensus         9 ~~i~~~~lrkG~~i~~~g~p~~V~~~~~~k~GkrG~a~~~~k~knl~tG~~~e~~~~~~ekve~~~ie~~~~q~ly~d~~   88 (136)
T 2eif_A            9 KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGD   88 (136)
T ss_dssp             EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETT
T ss_pred             EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEECCCEEEEEEEEEEECCC
T ss_conf             79869996568999999998999999998688886408999999936896999998189700035366653799997599


Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEC
Q ss_conf             8999946887643211543001332013786156897667774401
Q gi|254781067|r   81 GFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVE  126 (189)
Q Consensus        81 ~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~  126 (189)
                      .|+|||+++|||++||   ++++..||+||++|++++++|+..-++
T Consensus        89 ~~~fMd~e~yeq~~l~---v~~~~~~l~eg~~v~v~~~~g~e~i~~  131 (136)
T 2eif_A           89 MVQIMDLQTYETLELP---IPEGIEGLEPGGEVEYIEAVGQYKITR  131 (136)
T ss_dssp             EEEEEETTTCCEEEEE---CCSCCTTCSTTCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEE---CCCHHHHCCCCCEEEEEEECCCEEEEE
T ss_conf             8999259995788836---751365334999899999999499999


No 7  
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00  E-value=1.1e-34  Score=232.01  Aligned_cols=127  Identities=24%  Similarity=0.322  Sum_probs=118.4

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE
Q ss_conf             36643216775899889379999987536888-76389999998246871001342787200101056405789961988
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG   81 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~   81 (189)
                      .+.|++||+|++|++||+||+|++++|+|||| |+|++|+++|||.||++++.+|+++|++|.|.++++++||||.||+.
T Consensus        30 ~~qa~~lkkG~~i~idg~P~~Vv~~~~~KpGKhG~a~~rik~k~l~TG~~~e~tf~s~e~ve~a~vek~~~Q~lY~dg~~  109 (167)
T 3er0_A           30 PMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDGF  109 (167)
T ss_dssp             EEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTTTT
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCE
T ss_conf             26788866799999999579999988337988764389999998468988899853898888779999888999965991


Q ss_pred             EEEEECCCC--CCCCCCHHHHHHHHH-HCCCCCEEEEEEEC----CEEEEE-CCCC
Q ss_conf             999946887--643211543001332-01378615689766----777440-1587
Q gi|254781067|r   82 FHFMNPETY--DQVTVSEEVIGDQKV-YFQEGMEVKLLIHE----GVALSV-EVPR  129 (189)
Q Consensus        82 ~~FMd~ety--eqi~i~~~~ig~~~~-fL~eg~~v~i~~~~----~~~i~i-~lP~  129 (189)
                      |+|||+++|  ||+.||.+.+++..+ ||.||++|.+.+++    +.+|++ ++|.
T Consensus       110 ~~fMD~e~yt~eqi~l~~~~l~d~~k~~l~eg~ev~V~vi~~mG~e~vi~ik~~~~  165 (167)
T 3er0_A          110 LSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAISFKEAAR  165 (167)
T ss_dssp             CCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEEEECCCCC
T ss_pred             EEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEECCCC
T ss_conf             79991799568877668889899999997489969999992499799899731467


No 8  
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens}
Probab=100.00  E-value=2.4e-33  Score=223.79  Aligned_cols=124  Identities=16%  Similarity=0.257  Sum_probs=115.2

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE
Q ss_conf             36643216775899889379999987536888-76389999998246871001342787200101056405789961988
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG   81 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~   81 (189)
                      .|.||+||+|++|+++|+||+|++++|++||| |+|++|+|+|||.||++++++|+++|++|.|+++++++||||.|++.
T Consensus         6 ~i~as~lkkG~~i~~~G~p~~V~~~~~~kpgk~G~a~v~~k~knl~tG~~~e~t~~~~d~ve~~~v~~~~~q~ly~d~~~   85 (138)
T 3cpf_A            6 PMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGY   85 (138)
T ss_dssp             EEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEETTE
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCE
T ss_conf             87889976789999999999999999986867876699999999789999999856996998778998889999976997


Q ss_pred             EEEEECCCC--CCCCCCHHHHHHHH-HHCCCCCEEEEEEE----CCEEEEEC
Q ss_conf             999946887--64321154300133-20137861568976----67774401
Q gi|254781067|r   82 FHFMNPETY--DQVTVSEEVIGDQK-VYFQEGMEVKLLIH----EGVALSVE  126 (189)
Q Consensus        82 ~~FMd~ety--eqi~i~~~~ig~~~-~fL~eg~~v~i~~~----~~~~i~i~  126 (189)
                      |+|||+++|  ||+.|+.+.+|+.. .||.||++|.+.++    ++.+|++.
T Consensus        86 ~~fMd~~~~~~e~i~l~~~~l~~~i~~~~~eg~~v~V~vi~~~g~e~vi~v~  137 (138)
T 3cpf_A           86 LSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK  137 (138)
T ss_dssp             EEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEE
T ss_conf             9998169863589865878978999998648998999999018929999960


No 9  
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=99.98  E-value=8.3e-32  Score=214.30  Aligned_cols=123  Identities=15%  Similarity=0.248  Sum_probs=111.9

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE
Q ss_conf             36643216775899889379999987536888-76389999998246871001342787200101056405789961988
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG   81 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~   81 (189)
                      .+.|++||+|++|+++|+||+|++++|++||| |+|++|+++|||.||++++.+|+++++++.|.++++++||||.|++.
T Consensus        28 ~i~as~lkkG~~i~idg~pc~V~~~~~skpGKhG~A~~rik~kdi~tG~~~e~t~~s~d~ve~~~v~~~~~Q~ly~d~~~  107 (167)
T 3hks_A           28 PQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDG  107 (167)
T ss_dssp             EEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECTTS
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCC
T ss_conf             67889966788999999999999999867877755179999997147957899704763001467898899999987897


Q ss_pred             EEEEECCCCC---CCCC--CHHHHHHHHHHCCCCCEEEEEEECC----EEEEE
Q ss_conf             9999468876---4321--1543001332013786156897667----77440
Q gi|254781067|r   82 FHFMNPETYD---QVTV--SEEVIGDQKVYFQEGMEVKLLIHEG----VALSV  125 (189)
Q Consensus        82 ~~FMd~etye---qi~i--~~~~ig~~~~fL~eg~~v~i~~~~~----~~i~i  125 (189)
                      |+|||+++||   |+.|  +.+++++...||.||++|.|.+|+.    .++++
T Consensus       108 ~~fMd~e~~et~E~i~l~~~~~l~~~~~~~l~eG~ev~V~~~~~mG~e~ii~v  160 (167)
T 3hks_A          108 FVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAV  160 (167)
T ss_dssp             BEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEE
T ss_conf             39999079808887614773157899998875899899999916996999999


No 10 
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=99.97  E-value=1.2e-29  Score=201.03  Aligned_cols=117  Identities=20%  Similarity=0.282  Sum_probs=106.5

Q ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCE
Q ss_conf             36643216775899889379999987536888-76389999998246871001342787200101056405789961988
Q gi|254781067|r    3 KVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEG   81 (189)
Q Consensus         3 ~i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~   81 (189)
                      .+.|++||+|++|+++|+||+|++++|+|||| |+|++|+++|||.||++++.+|++++++|.|+++++++||||.|++.
T Consensus        30 ~~~a~~lkkG~~i~idG~P~~V~~~~~~kpGKhG~a~~ri~~kdl~TG~~~e~~~~s~d~ve~~~vek~~~q~ly~d~d~  109 (174)
T 1x6o_A           30 PLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANE  109 (174)
T ss_dssp             EEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECCS
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCC
T ss_conf             77778876689999999899999898607998744799999998447958899843787744114877888999863864


Q ss_pred             -------EEEEECCCCCCCCCCHHHH----HHHHHHCCCCCEEEEEEEC
Q ss_conf             -------9999468876432115430----0133201378615689766
Q gi|254781067|r   82 -------FHFMNPETYDQVTVSEEVI----GDQKVYFQEGMEVKLLIHE  119 (189)
Q Consensus        82 -------~~FMd~etyeqi~i~~~~i----g~~~~fL~eg~~v~i~~~~  119 (189)
                             ++|||+++|+|+.|+....    .+...||.+|.+|.+.+++
T Consensus       110 ~~~~dg~~~fMD~etyeq~~l~~~~~~e~~~~ik~~~~eg~~v~V~v~~  158 (174)
T 1x6o_A          110 DPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS  158 (174)
T ss_dssp             STTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             3334425899716984566440576603999999873089989999993


No 11 
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.31  E-value=9.7e-12  Score=91.40  Aligned_cols=122  Identities=14%  Similarity=0.161  Sum_probs=86.2

Q ss_pred             EEHHHCCCCCEEEECCEEEEEEEEEEE-CCCC-CCCEEEEEEEECC-CCCCEEEEECCCCCEEEEEECCCEEEEEEEECC
Q ss_conf             664321677589988937999998753-6888-7638999999824-687100134278720010105640578996198
Q gi|254781067|r    4 VIASAVRKGNVLDVDGKLYIVLVAKNF-HPGK-GTPITQVEMRRIS-DGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQE   80 (189)
Q Consensus         4 i~an~lk~G~~i~~dg~~~~V~~~~~~-kpgk-g~a~v~~klknL~-tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~   80 (189)
                      +.++.||+|..+.++|.||+|++...+ |||| |.|-+++-...+. +|++.+...++..+++.+.++++++|++..+++
T Consensus        35 ~q~~~LrkGgyv~Ikg~PCKVveisTS~KtGKHGhak~dIft~~~~e~~~k~~~~~Ps~~~~~vP~v~r~eyqlldI~dg  114 (176)
T 1khi_A           35 IPCHHIRLGDILILQGRPCQVIRISTSAATGQHRYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDMQDG  114 (176)
T ss_dssp             EEGGGCCTTCEEEETTEEEEEEEEEECTTTCCEEEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCEEEEEEEEETT
T ss_pred             EECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEECCCEEEEEEEEEEEECC
T ss_conf             35421110889999881068998862788984546889998611674366434757997302667436615799998189


Q ss_pred             EEEEEECCCC--CCCCCCH-HHHHHHH-HHCCCCC-EEEEEEE----CCEEEEE
Q ss_conf             8999946887--6432115-4300133-2013786-1568976----6777440
Q gi|254781067|r   81 GFHFMNPETY--DQVTVSE-EVIGDQK-VYFQEGM-EVKLLIH----EGVALSV  125 (189)
Q Consensus        81 ~~~FMd~ety--eqi~i~~-~~ig~~~-~fL~eg~-~v~i~~~----~~~~i~i  125 (189)
                      ...+||.+.+  |.+.+|. .-+++.+ .-+.+|- .+.+.++    ++.++++
T Consensus       115 ~lsLMd~~G~~keDl~lp~~~el~~~I~~~fe~gk~~v~VtVisamG~E~ii~~  168 (176)
T 1khi_A          115 SIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDM  168 (176)
T ss_dssp             EEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEEEE
T ss_pred             CEEEECCCCCEECCEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEE
T ss_conf             289983799784121058821689999999867987589999821994678999


No 12 
>3nr3_A PMP2 protein; structural genomics, structural genomics consortium, SGC, TR transport protein; HET: PLM CIT EPE; 1.95A {Homo sapiens}
Probab=68.59  E-value=6.3  Score=19.01  Aligned_cols=47  Identities=6%  Similarity=0.150  Sum_probs=35.0

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEEEE
Q ss_conf             99999824687100134278720010105640578996-198899994
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHFMN   86 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~FMd   86 (189)
                      +..++...+.+..+.+|+.++.+++..++-+.+.-.|. +|+..+..-
T Consensus        70 ~~tikt~s~~kt~~~tF~lGeEfee~~~dG~~~k~t~t~eg~kL~~~~  117 (153)
T 3nr3_A           70 IITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQ  117 (153)
T ss_dssp             EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEE
T ss_conf             999999779733898898898568876899789999999899999999


No 13 
>2wut_A Myelin P2 protein; transport, lipid-binding, fatty acid binding protein, peripheral membrane protein; HET: PLM; 1.85A {Homo sapiens} PDB: 1pmp_A* 1yiv_A*
Probab=63.49  E-value=8  Score=18.40  Aligned_cols=47  Identities=6%  Similarity=0.157  Sum_probs=34.9

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEEEEC
Q ss_conf             9999824687100134278720010105640578996-1988999946
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHFMNP   87 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~FMd~   87 (189)
                      ..++...+.+..+.+|+.++.+++-.++-+.++-.|. +|+..+....
T Consensus        51 ~~ikt~t~~k~~~~tF~lGeefee~~~~g~~~k~~~t~eg~kl~~~~~   98 (133)
T 2wut_A           51 ITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQR   98 (133)
T ss_dssp             EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEEE
T ss_conf             999992797336888888888888768997899999997999999995


No 14 
>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ...
Probab=48.86  E-value=12  Score=17.25  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             CEEEEEEEECCEEEEEECCCCCCCCCCH
Q ss_conf             4057899619889999468876432115
Q gi|254781067|r   70 QRFQFLYQDQEGFHFMNPETYDQVTVSE   97 (189)
Q Consensus        70 ~~~qylY~dg~~~~FMd~etyeqi~i~~   97 (189)
                      -++||+|. ++.|+||...+==|.+.+-
T Consensus       273 ~tvEfl~~-~~~~yflEvN~R~qvehpv  299 (449)
T 2w70_A          273 GTFEFLFE-NGEFYFIEMNTRIQVEHPV  299 (449)
T ss_dssp             EEEEEEEE-TTEEEEEEEECSCCTTHHH
T ss_pred             CEEEEEEE-CCEEEEEECCCCCCCCCCE
T ss_conf             05899998-9979998321466656540


No 15 
>1g7n_A Adipocyte lipid-binding protein; fatty acid binding protein, beta barrel, protein engineering; 1.50A {Mus musculus} SCOP: b.60.1.2 PDB: 1g74_A 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* 2ans_A* 3hk1_A* 1a18_A* 1a2d_A* 1ab0_A 1acd_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* ...
Probab=44.68  E-value=16  Score=16.51  Aligned_cols=46  Identities=11%  Similarity=0.110  Sum_probs=34.8

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEE
Q ss_conf             999998246871001342787200101056405789-9619889999
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFM   85 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FM   85 (189)
                      ...++...+.+..+.+|+.++.+++..++-+.++-. ..||+..+..
T Consensus        48 ~~tikt~t~~kt~~~tF~lGeefee~~~dg~~~k~~~t~eg~klv~~   94 (131)
T 1g7n_A           48 LVTIRSESTFKNTEISFKLGVEFDEETVDGRKVKSIITLDGGALVQV   94 (131)
T ss_dssp             EEEEEECCSSCCEEEEECTTCCEEEECTTSCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE
T ss_conf             99999987885389999898478988899989999999979999999


No 16 
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=41.08  E-value=18  Score=16.16  Aligned_cols=47  Identities=6%  Similarity=0.090  Sum_probs=34.6

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEE
Q ss_conf             9999982468710013427872001010564057899-6198899994
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMN   86 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd   86 (189)
                      ...++...+.+..+.+|+.|+.+|+..++-+.+.-.+ .||+....--
T Consensus        50 ~~~ikt~s~~kt~~~~F~lGeefee~~~dG~~~k~~~t~eG~~~~~~~   97 (133)
T 1ftp_A           50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVHE   97 (133)
T ss_dssp             EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEEE
T ss_pred             EEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEEEEE
T ss_conf             999999768704899998787888888999799889999789689999


No 17 
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=40.97  E-value=19  Score=16.15  Aligned_cols=46  Identities=13%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEE
Q ss_conf             999998246871001342787200101056405789-9619889999
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFM   85 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FM   85 (189)
                      ...++...+.+..+.+|+.++.+++..++-+.+.-. ..+|+.++..
T Consensus        48 ~~~ikt~t~~~t~~~~F~lG~efee~~~dg~~~k~~~t~eg~klv~~   94 (131)
T 1fdq_A           48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHI   94 (131)
T ss_dssp             EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE
T ss_conf             99999988871389999868768998589978989999979999999


No 18 
>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=39.87  E-value=13  Score=17.06  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.1

Q ss_pred             CCCCCCEEEEECCCCCEEHHCC
Q ss_conf             0168879999889972402102
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      =|+.||.|+|.++.|+...||+
T Consensus       931 GIkdGD~V~V~s~~G~v~~~A~  952 (1015)
T 1kqf_A          931 GINNGDRVTVSSKRGFIRAVAV  952 (1015)
T ss_dssp             TCCTTCEEEEECSSCEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEEE
T ss_conf             9999999999869989999999


No 19 
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=38.27  E-value=14  Score=16.82  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=38.2

Q ss_pred             EECCCCCCCEEEEE-EE-ECCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             53688876389999-99-82468710013427872001010564057899619889999468876432115430013320
Q gi|254781067|r   29 NFHPGKGTPITQVE-MR-RISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVY  106 (189)
Q Consensus        29 ~~kpgkg~a~v~~k-lk-nL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~~~f  106 (189)
                      |+..||-.-+.+-. +. +|.||+.++. +.+.+         ....--|.+...|++|++++....-|           
T Consensus         9 ~~~~~~~~~~~k~~~~~v~LiTGRt~~Q-g~~~~---------~k~~~~Y~~~~~~i~inP~DA~~LGi-----------   67 (146)
T 2ki8_A            9 HHSSGRENLYFQGHMLEVEVISGRTLNQ-GATVE---------EKLTEEYFNAVNYAEINEEDWNALGL-----------   67 (146)
T ss_dssp             CCCCCCCCCCCCCCCEEEEEEEECCSCC-SSCTT---------TTCSHHHHHSSSEEEECHHHHHHHTC-----------
T ss_pred             CCCCCCCCEECCCCEEEEEEEECCCHHH-HHHHH---------CCCCHHHCCCCEEEEECHHHHHHCCC-----------
T ss_conf             3467731011147613899995651788-66453---------44776566757599999999988499-----------


Q ss_pred             CCCCCEEEEEEECCE
Q ss_conf             137861568976677
Q gi|254781067|r  107 FQEGMEVKLLIHEGV  121 (189)
Q Consensus       107 L~eg~~v~i~~~~~~  121 (189)
                       .+|..|.+.--.|.
T Consensus        68 -~~Gd~V~V~s~~G~   81 (146)
T 2ki8_A           68 -QEGDRVKVKTEFGE   81 (146)
T ss_dssp             -CTTCEEEEECSSCE
T ss_pred             -CCCCEEEEECCCEE
T ss_conf             -98999999879978


No 20 
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=36.10  E-value=12  Score=17.20  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=18.0

Q ss_pred             CCCCCCEEEEECCCCCEEHHCC
Q ss_conf             0168879999889972402102
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      =|+.||.|+|-++.|+...||+
T Consensus       783 GI~dGD~V~V~n~~G~~~~~a~  804 (875)
T 1ti6_A          783 GIKNGDLIRAYNDRGSVILAAQ  804 (875)
T ss_dssp             TCCTTCEEEEEETTEEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEEE
T ss_conf             9998999999869979999999


No 21 
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=35.96  E-value=17  Score=16.41  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             CEEEEEEE-ECCEEEEEECCCCCCCCCC
Q ss_conf             40578996-1988999946887643211
Q gi|254781067|r   70 QRFQFLYQ-DQEGFHFMNPETYDQVTVS   96 (189)
Q Consensus        70 ~~~qylY~-dg~~~~FMd~etyeqi~i~   96 (189)
                      -.++|+|. +++.|+||...+.=|.+-+
T Consensus       271 gtvEfl~d~~~~~~yflEvN~Rlqveh~  298 (451)
T 2vpq_A          271 GTIEFIYDLNDNKFYFMEMNTRIQVEHP  298 (451)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSCCTTHH
T ss_pred             CEEEEEEECCCCCEEEEEECCCCCCCEE
T ss_conf             2068999558995899972377677511


No 22 
>2q9s_A Fatty acid-binding protein; beta clamshell, lipid binding protein; HET: EIC; 2.30A {Mus musculus} SCOP: b.60.1.2 PDB: 2qm9_A*
Probab=35.50  E-value=23  Score=15.62  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=34.0

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEE
Q ss_conf             999998246871001342787200101056405789-9619889999
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFM   85 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FM   85 (189)
                      ...++...+.+..+.+|+.++.+++..++-+.++-. ..||+.++..
T Consensus        72 ~~tikt~t~~kt~~~tF~lGeEfee~~~dG~kvk~t~t~eG~kLv~~  118 (155)
T 2q9s_A           72 LVTIRSESTFKNTEISFKLGVEFDEITADDRKVKSIITLDGGALVQV  118 (155)
T ss_dssp             EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE
T ss_conf             99999965774079999899768887689979989999969999999


No 23 
>1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1
Probab=35.11  E-value=17  Score=16.32  Aligned_cols=21  Identities=14%  Similarity=0.406  Sum_probs=17.1

Q ss_pred             CCCCCCEEEEECCCCCEEHHC
Q ss_conf             016887999988997240210
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERV  187 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Ra  187 (189)
                      =|+.||.|+|-+..|+...|+
T Consensus       731 GI~dGD~V~V~~~~G~i~~~~  751 (802)
T 1ogy_A          731 GLNRGSEVRVISRRGEIRTRL  751 (802)
T ss_dssp             TCCTTCEEEEECSSCEEEEEE
T ss_pred             CCCCCCEEEEECCCCEEEEEE
T ss_conf             999999999988993499999


No 24 
>1bwy_A Protein (heart fatty acid binding protein); intracellular lipid binding protein, heart muscle; NMR {Bos taurus} SCOP: b.60.1.2 PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A*
Probab=34.70  E-value=23  Score=15.55  Aligned_cols=47  Identities=9%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEE-EEECCEEEEEE
Q ss_conf             999998246871001342787200101056405789-96198899994
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFL-YQDQEGFHFMN   86 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qyl-Y~dg~~~~FMd   86 (189)
                      +..++...+.+..+.+|+.++.+++..++-+.+... ..+|+.++...
T Consensus        48 ~~~ikt~t~~~t~~~~F~lGeefee~~~dg~~~k~~~t~eg~klv~~~   95 (132)
T 1bwy_A           48 TVIIKTQSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQ   95 (132)
T ss_dssp             EEEEEECCSSCCEEEEECTTEEEEEEETTTEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEE
T ss_conf             999999567723799998588478974899789899999799999999


No 25 
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=33.71  E-value=14  Score=16.97  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             HCCCCCE---E-EEEEECCEEEEECCCCEEEE
Q ss_conf             0137861---5-68976677744015874999
Q gi|254781067|r  106 YFQEGME---V-KLLIHEGVALSVEVPRHVVF  133 (189)
Q Consensus       106 fL~eg~~---v-~i~~~~~~~i~i~lP~~v~l  133 (189)
                      |=..||+   . .+..|+|+|||..||-.|.+
T Consensus        26 fDl~G~eGeV~~~v~~wkGr~ISanlP~~V~F   57 (75)
T 1dj7_B           26 FDLQGMEGEVAAVLTEWQGRPISANLPVLVKF   57 (75)
T ss_dssp             EECTTCEEEEEEECSEETTEECCCSSCEEEEE
T ss_pred             CCCCCCEEEEEEEEECCCCCEECCCCCEEEEE
T ss_conf             45688777776787313796956997699997


No 26 
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=30.25  E-value=17  Score=16.44  Aligned_cols=116  Identities=12%  Similarity=0.069  Sum_probs=54.1

Q ss_pred             EEEEEEEEECCCCCCCEE-EEEEE--ECCCCCCEEEEECCCCCEE------EE------EE---CCCEEEEEEEECCEEE
Q ss_conf             999998753688876389-99999--8246871001342787200------10------10---5640578996198899
Q gi|254781067|r   22 YIVLVAKNFHPGKGTPIT-QVEMR--RISDGVKVSNRWRTTEQVE------RA------FV---EDQRFQFLYQDQEGFH   83 (189)
Q Consensus        22 ~~V~~~~~~kpgkg~a~v-~~klk--nL~tG~~~e~~f~~~ekve------~~------~i---e~~~~qylY~dg~~~~   83 (189)
                      ++-++.|-..-+.|.... --...  --.+++.++..-...-.-+      .+      .+   .--.++|||..++.|+
T Consensus       205 ~rhiEvqvl~D~~Gnvi~l~erdcsiqrr~qk~ieeaPa~~l~~~~r~~i~~~A~~~a~avgy~g~gTvEfl~d~~~~~y  284 (451)
T 1ulz_A          205 PKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLY  284 (451)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEE
T ss_pred             CEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEE
T ss_conf             47989999996899889976404667646777641467986899999999999999999849711115899983899879


Q ss_pred             EEECCCCCCCCCC-------HHHHHHHHHHCCCCCEEEEEEECCEEEEECC-CCEEEEEEEECCCCCCC
Q ss_conf             9946887643211-------5430013320137861568976677744015-87499999982854213
Q gi|254781067|r   84 FMNPETYDQVTVS-------EEVIGDQKVYFQEGMEVKLLIHEGVALSVEV-PRHVVFTVIDTEPSSKG  144 (189)
Q Consensus        84 FMd~etyeqi~i~-------~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~l-P~~v~l~V~~t~p~~kG  144 (189)
                      ||...+-=|.+-+       -|++..+.. |..|..+...  ++   .+.. ...+++.+ ++|+..++
T Consensus       285 FlE~NtRlQVEh~vTE~vtGiDlV~~qi~-iA~G~~l~~~--~~---~~~~~g~aie~Ri-~aEdp~~~  346 (451)
T 1ulz_A          285 FIEMNTRIQVEHPVSEMVTGIDIVKWQIK-IAAGEPLTIK--QE---DVKFNGYAIECRI-NAEDPKKN  346 (451)
T ss_dssp             EEEEECSCCTTHHHHHHHHCCCHHHHHHH-HHTTCCCCCC--GG---GCCCCSEEEEEEE-ESEEGGGT
T ss_pred             EEECCCCCCCCCCEEEEEECCHHHHHHHH-HHCCCCCCCC--CC---CCCCCCEEEEEEE-EECCCCCC
T ss_conf             99624666777530110007559999999-8679988985--02---5454560688876-30377666


No 27 
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=30.18  E-value=24  Score=15.52  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=17.2

Q ss_pred             CCCCCCEEEEECCCCCEEHHCC
Q ss_conf             0168879999889972402102
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      =|+.||.|+|.++.|+...||+
T Consensus       680 GI~dGD~V~V~s~~G~i~~~a~  701 (780)
T 1eu1_A          680 GIADGDVLRVFNDRGQILVGAK  701 (780)
T ss_dssp             TCCTTCEEEEECSSCEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEEE
T ss_conf             9998999999879979999999


No 28 
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=29.44  E-value=29  Score=15.01  Aligned_cols=55  Identities=11%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEEECCCCCCCCC
Q ss_conf             999982468710013427872001010564057899-6198899994688764321
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFMNPETYDQVTV   95 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FMd~etyeqi~i   95 (189)
                      ..++...+.+..+.+|+.++.+++..++-+.+.-.+ .||+......+....+..+
T Consensus        49 ~tikt~t~~kt~~~~F~lG~efee~~~dG~~~k~~~t~egd~~~~~~~~~~k~~~~  104 (131)
T 2a0a_A           49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQTQFGDKEVKI  104 (131)
T ss_dssp             EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEEEECSSSCEEE
T ss_pred             EEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEE
T ss_conf             99999137706899998897678887999899999999479989999869984799


No 29 
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=28.60  E-value=29  Score=14.92  Aligned_cols=54  Identities=7%  Similarity=0.097  Sum_probs=37.7

Q ss_pred             EEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHH-HHHCCCCCEEEEE
Q ss_conf             01010564057899619889999468876432115430013-3201378615689
Q gi|254781067|r   63 ERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQ-KVYFQEGMEVKLL  116 (189)
Q Consensus        63 e~~~ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~ig~~-~~fL~eg~~v~i~  116 (189)
                      +...+.++.+...+..+..|+..|..+-.-..|+..-|... ..-|.+|..+.+-
T Consensus        55 ~~~~VSR~Ha~i~~~~~g~~~i~Dl~S~NGt~vNg~~l~~~~~~~L~~GD~I~iG  109 (145)
T 2csw_A           55 CPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG  109 (145)
T ss_dssp             CGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCBTCCEECCSSCCEEES
T ss_pred             CCCCCCHHHEEEEECCCCEEEEEECCCCCCEEECCEECCCCCEEECCCCCEEEEC
T ss_conf             5673744795999899997999989988875999999689961799999999969


No 30 
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=28.50  E-value=23  Score=15.58  Aligned_cols=22  Identities=18%  Similarity=0.160  Sum_probs=17.6

Q ss_pred             CCCCCCEEEEECCCCCEEHHCC
Q ss_conf             0168879999889972402102
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      =|+.||.|+|.++.|+-..||+
T Consensus       739 GI~~GD~V~V~s~~G~v~~~a~  760 (825)
T 1g8k_A          739 DVTGGDIVEVYNDFGSTFAMVY  760 (825)
T ss_dssp             TCCTTEEEEEECSSCEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEEE
T ss_conf             9999999999869989999999


No 31 
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=28.35  E-value=26  Score=15.21  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=15.2

Q ss_pred             CCCCCEEEEECCCCCEEHHCC
Q ss_conf             168879999889972402102
Q gi|254781067|r  168 INIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       168 I~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      |+.||.|+|-++.|+...||+
T Consensus       721 I~dGD~V~V~s~~G~v~~~a~  741 (829)
T 1tmo_A          721 IKDGDIVRVFNDRGQLLAGAV  741 (829)
T ss_dssp             CCTTCEEEEECSSCEEEEEEE
T ss_pred             CCCCCEEEEECCCEEEEEEEE
T ss_conf             999999999879889999999


No 32 
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=27.70  E-value=28  Score=15.10  Aligned_cols=21  Identities=10%  Similarity=0.148  Sum_probs=13.1

Q ss_pred             CCCCCEEEEECCCCCEEHHCC
Q ss_conf             168879999889972402102
Q gi|254781067|r  168 INIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       168 I~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      |+.||.|+|.++.|+...+|+
T Consensus       620 I~dGD~V~v~s~~G~~~~~a~  640 (715)
T 2iv2_X          620 IEDEALVWVHSRKGKIITRAQ  640 (715)
T ss_dssp             CCTTCEEEEECSSCEEEEEEE
T ss_pred             CCCCCEEEEECCCEEEEEEEE
T ss_conf             999699999889988999999


No 33 
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=27.49  E-value=21  Score=15.79  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=18.4

Q ss_pred             CCCCCCEEEEECCCCCEEHHCC
Q ss_conf             0168879999889972402102
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      =|+.||.|+|-++.|+-..||.
T Consensus       893 GIkdGD~V~V~s~~G~v~~~A~  914 (977)
T 1h0h_A          893 GIKNGDKVILESVRGKLWAKAI  914 (977)
T ss_dssp             TCCTTCEEEEEETTEEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEEE
T ss_conf             9998999999879989999999


No 34 
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=25.02  E-value=34  Score=14.52  Aligned_cols=45  Identities=9%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE-ECCEEEE
Q ss_conf             99999824687100134278720010105640578996-1988999
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ-DQEGFHF   84 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~-dg~~~~F   84 (189)
                      ...++...+.+..+.+|+.|+.+++..++-+.+.-.+. +|+.++.
T Consensus        46 ~~ti~t~t~~kt~~~tF~lGeefee~~~dg~~~k~t~t~eg~kLv~   91 (125)
T 1p6p_A           46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC   91 (125)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEE
T ss_conf             9999997278318999977875788779998999999998999999


No 35 
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=24.49  E-value=26  Score=15.24  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=14.4

Q ss_pred             CCCCCEEEEECCCCCEEHHCC
Q ss_conf             168879999889972402102
Q gi|254781067|r  168 INIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       168 I~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      |+.||.|+|.++.|+...+|+
T Consensus       655 i~dGD~V~V~n~~G~v~~~v~  675 (723)
T 2nap_A          655 IKHGDSVIVETRRDAMELPAR  675 (723)
T ss_dssp             CCTTCEEEEEETTEEEEEEEE
T ss_pred             CCCCCEEEEEECCEEEEEEEE
T ss_conf             999899999938948999999


No 36 
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=24.48  E-value=20  Score=15.90  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             HCCCCCEEEECCEEEEEEEEEEECCC
Q ss_conf             21677589988937999998753688
Q gi|254781067|r    8 AVRKGNVLDVDGKLYIVLVAKNFHPG   33 (189)
Q Consensus         8 ~lk~G~~i~~dg~~~~V~~~~~~kpg   33 (189)
                      .-+.|..+.++|..|+|+-...+.+|
T Consensus         7 ~Y~~Gd~Vty~G~~Y~c~q~HTs~~~   32 (45)
T 1ed7_A            7 AYTAGQLVTYNGKTYKCLQPHTSLAG   32 (45)
T ss_dssp             EECTTCCEEETTEEECBCSCEEECTT
T ss_pred             EEECCCEEEECCEEEEEEECCCCCCC
T ss_conf             58189999989918899753124588


No 37 
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=24.09  E-value=36  Score=14.41  Aligned_cols=103  Identities=12%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             CCCEEEEE--EEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf             56405789--9619889999468876432115430013320137861568976677744015874999999828542131
Q gi|254781067|r   68 EDQRFQFL--YQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQ  145 (189)
Q Consensus        68 e~~~~qyl--Y~dg~~~~FMd~etyeqi~i~~~~ig~~~~fL~eg~~v~i~~~~~~~i~i~lP~~v~l~V~~t~p~~kG~  145 (189)
                      ..+..++.  +.+..-+++.|..-.+|+-.  +++.++.+|..++-.|.+....       .+..+.+.|.++-||+.-+
T Consensus       221 ~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~--NLl~NAi~~~~~~g~I~v~~~~-------~~~~v~i~V~D~G~Gi~~~  291 (349)
T 3a0r_A          221 RKMNIDFCFETDNEDLRVEADRTRIKQVLI--NLVQNAIEATGENGKIKITSED-------MYTKVRVSVWNSGPPIPEE  291 (349)
T ss_dssp             TTTTCCCEEEESCSCCEEEECHHHHHHHHH--HHHTHHHHTTCTTCCEEEEEEE-------ETTEEEEEEEEESCCCCGG
T ss_pred             HHCCCEEEEECCCCCEEEEECHHHHHHHHH--HHHHHHHHHCCCCCEEEEEEEE-------CCCEEEEEEEECCCCCCHH
T ss_conf             866918999727887089985789999999--9999999976799669999995-------3548999999789998989


Q ss_pred             CCCCCEEEEE----EECCCEEE-CCCCCC--CCCEEEEECC
Q ss_conf             0247700089----93795998-474016--8879999889
Q gi|254781067|r  146 TVTASYKPAI----LSNDIRTT-VPPHIN--IGDDIVILTE  179 (189)
Q Consensus       146 t~~~~~K~A~----letG~~i~-VP~FI~--~Gd~IkV~T~  179 (189)
                      .......|=.    =-||+-+- |=.+++  -|-.|.+.+.
T Consensus       292 ~~~~iFepF~ttk~~GtGLGL~i~k~iv~~~hgG~i~~~s~  332 (349)
T 3a0r_A          292 LKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENR  332 (349)
T ss_dssp             GGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEEC
T ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             99872699631898973557999999999848998999977


No 38 
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=23.15  E-value=37  Score=14.30  Aligned_cols=46  Identities=7%  Similarity=0.111  Sum_probs=34.9

Q ss_pred             EEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCEEEEE
Q ss_conf             9999982468710013427872001010564057899-619889999
Q gi|254781067|r   40 QVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEGFHFM   85 (189)
Q Consensus        40 ~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~~~FM   85 (189)
                      ...++...+.+..+.+|+.++.+|+..++-+.++..+ .||+-++..
T Consensus        48 ~~tikt~t~~kt~~~tF~lG~efee~~~dG~k~k~~~t~eg~kLv~~   94 (132)
T 1mdc_A           48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTHV   94 (132)
T ss_dssp             EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEE
T ss_conf             99999972771389999689767888799979999899989999999


No 39 
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP}
Probab=22.60  E-value=38  Score=14.23  Aligned_cols=21  Identities=19%  Similarity=0.158  Sum_probs=18.0

Q ss_pred             CCCCCEEEEECCCCCEEHHCC
Q ss_conf             168879999889972402102
Q gi|254781067|r  168 INIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       168 I~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      |+.||.|+|-++.|+-..||+
T Consensus       886 I~dGD~V~V~n~~G~v~~~a~  906 (976)
T 2ivf_A          886 IKDGDMAKLFNDFADCEIMVR  906 (976)
T ss_dssp             CCTTCEEEEECSSCEEEEEEE
T ss_pred             CCCCCEEEEEECCEEEEEEEE
T ss_conf             998999999838989999999


No 40 
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=21.33  E-value=40  Score=14.07  Aligned_cols=45  Identities=11%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEE-EECCE-EEEE
Q ss_conf             999982468710013427872001010564057899-61988-9999
Q gi|254781067|r   41 VEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLY-QDQEG-FHFM   85 (189)
Q Consensus        41 ~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY-~dg~~-~~FM   85 (189)
                      ..++...+.+..+.+|+.++.+|+..++-+.++-.+ .||+. .+..
T Consensus        51 ~~ikt~s~~kt~~~~F~lG~efee~~~dg~~vk~~~~~egd~~~~~~   97 (135)
T 1vyf_A           51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQT   97 (135)
T ss_dssp             EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred             EEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCEEEEE
T ss_conf             99999617704899999687889886999899889998689899999


No 41 
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=20.09  E-value=43  Score=13.91  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=16.9

Q ss_pred             CCCCCCEEEEECCCCCEEHHCC
Q ss_conf             0168879999889972402102
Q gi|254781067|r  167 HINIGDDIVILTEDNSYVERVK  188 (189)
Q Consensus       167 FI~~Gd~IkV~T~~g~Y~~Rak  188 (189)
                      =|+.||.|+|.++.|+...+|+
T Consensus       638 Gi~dGD~V~V~s~~G~v~~~a~  659 (727)
T 2e7z_A          638 GLPSGEWIWVETTHGRLKLLLK  659 (727)
T ss_dssp             TCCTTSEEEEECSSCEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEEE
T ss_conf             9999999999739989999999


No 42 
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=20.02  E-value=30  Score=14.90  Aligned_cols=20  Identities=10%  Similarity=0.268  Sum_probs=10.0

Q ss_pred             CCEEEEEEECCEEEEECCCC
Q ss_conf             86156897667774401587
Q gi|254781067|r  110 GMEVKLLIHEGVALSVEVPR  129 (189)
Q Consensus       110 g~~v~i~~~~~~~i~i~lP~  129 (189)
                      |.++.+...+|+.+.+.+|.
T Consensus       109 G~~~~i~~ldG~~i~i~i~~  128 (180)
T 2q2g_A          109 GFTCPVTTLDNRNLQIPIKE  128 (180)
T ss_dssp             CEEEEEECTTCCEEEEEECS
T ss_pred             CCEEEEECCCCCCEEEECCC
T ss_conf             98999821565530662298


Done!