RPSBLAST alignment of GI: 254781067 and protein with PDBid: 1bkb

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136
 Score = 89.6 bits (222), Expect = 4e-19
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 6   ASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVER 64
           A  +++G+ + +DG+   V+  +    GK G+   ++    + DG K +       QVE 
Sbjct: 11  AGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEV 70

Query: 65  AFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQ-KVYFQEGMEVKLLIHEG 120
             +E    Q L    +    M+   Y  + V  + + ++ K     G EV++     
Sbjct: 71  PIIEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILD 127