RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781067|ref|YP_003065480.1| elongation factor P
[Candidatus Liberibacter asiaticus str. psy62]
         (189 letters)



>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and
           C-terminal domains {Thermus thermophilus HB8 [TaxId:
           300852]}
          Length = 63

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 66  FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSV 125
           +VE +  Q+LY + E   FM+ ETY+Q  V    +   + +F+EGM     ++EG  + V
Sbjct: 1   YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKV 59

Query: 126 EVP 128
             P
Sbjct: 60  TPP 62


>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and
           C-terminal domains {Thermus thermophilus HB8 [TaxId:
           300852]}
          Length = 58

 Score = 74.2 bits (183), Expect = 6e-15
 Identities = 20/56 (35%), Positives = 26/56 (46%)

Query: 131 VVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVER 186
           V   V+DT P  +G TV+   KPA L       VP  +  G+ I + T    YV R
Sbjct: 2   VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGR 57


>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain
          {Thermus thermophilus HB8 [TaxId: 300852]}
          Length = 63

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 6  ASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVER 64
           + +R G  + +DG L+  +  ++   G+G      + + +  G  V   + + E++E 
Sbjct: 4  VTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLED 62


>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation
          factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 69

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 1  MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTT 59
            KV  S ++ G  + +D +   ++      PGK G+   ++E   I DG   S    T+
Sbjct: 3  KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 62

Query: 60 EQVE 63
           +V+
Sbjct: 63 AEVD 66


>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation
          factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum
          [TaxId: 13773]}
          Length = 71

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 6  ASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVE 63
          A  +++G+ + +DG+   V+  +    GK G+   ++    + DG K +       QVE
Sbjct: 11 AGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVE 69


>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation
          factor 5a (eIF5a) {Archaeon Methanococcus jannaschii
          [TaxId: 2190]}
          Length = 73

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 2  VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTE 60
           +V   +++ G  + +DG    ++      PGK G    +V    I + VK      T+ 
Sbjct: 8  KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSS 67

Query: 61 QVE 63
          +VE
Sbjct: 68 KVE 70


>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
           [TaxId: 11103]}
          Length = 530

 Score = 24.4 bits (53), Expect = 6.9
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 140 PSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180
            +S G T+T   K +      +      +  GDD+V++ E 
Sbjct: 286 TTSCGNTLTCYLKASAACRAAKLQDCTMLVNGDDLVVICES 326


>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
          sapiens), beta isoform [TaxId: 9606]}
          Length = 294

 Score = 23.8 bits (51), Expect = 9.1
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 15 LDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVK 51
          L++D  +  +L  +   PGK   + + E+R +    +
Sbjct: 2  LNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSR 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,421
Number of extensions: 31720
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 12
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)