RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62] (189 letters) >d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 Score = 78.9 bits (195), Expect = 2e-16 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 66 FVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEGVALSV 125 +VE + Q+LY + E FM+ ETY+Q V + + +F+EGM ++EG + V Sbjct: 1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIKV 59 Query: 126 EVP 128 P Sbjct: 60 TPP 62 >d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 58 Score = 74.2 bits (183), Expect = 6e-15 Identities = 20/56 (35%), Positives = 26/56 (46%) Query: 131 VVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVER 186 V V+DT P +G TV+ KPA L VP + G+ I + T YV R Sbjct: 2 VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGR 57 >d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 Score = 59.2 bits (144), Expect = 2e-10 Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 6 ASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTEQVER 64 + +R G + +DG L+ + ++ G+G + + + G V + + E++E Sbjct: 4 VTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLED 62 >d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69 Score = 50.9 bits (122), Expect = 6e-08 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTT 59 KV S ++ G + +D + ++ PGK G+ ++E I DG S T+ Sbjct: 3 KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 62 Query: 60 EQVE 63 +V+ Sbjct: 63 AEVD 66 >d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71 Score = 45.2 bits (107), Expect = 3e-06 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 6 ASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVE 63 A +++G+ + +DG+ V+ + GK G+ ++ + DG K + QVE Sbjct: 11 AGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVE 69 >d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73 Score = 42.9 bits (101), Expect = 2e-05 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 2 VKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTE 60 +V +++ G + +DG ++ PGK G +V I + VK T+ Sbjct: 8 KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSS 67 Query: 61 QVE 63 +VE Sbjct: 68 KVE 70 >d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus [TaxId: 11103]} Length = 530 Score = 24.4 bits (53), Expect = 6.9 Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 140 PSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180 +S G T+T K + + + GDD+V++ E Sbjct: 286 TTSCGNTLTCYLKASAACRAAKLQDCTMLVNGDDLVVICES 326 >d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]} Length = 294 Score = 23.8 bits (51), Expect = 9.1 Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 15 LDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVK 51 L++D + +L + PGK + + E+R + + Sbjct: 2 LNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSR 38 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0566 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 703,421 Number of extensions: 31720 Number of successful extensions: 94 Number of sequences better than 10.0: 1 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 12 Length of query: 189 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 109 Effective length of database: 1,309,196 Effective search space: 142702364 Effective search space used: 142702364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.4 bits)