BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62] (189 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 386 bits (991), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE Sbjct: 1 MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60 Query: 61 QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120 QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG Sbjct: 61 QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120 Query: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED Sbjct: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180 Query: 181 NSYVERVKK 189 NSYVERVKK Sbjct: 181 NSYVERVKK 189 >gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62] Length = 382 Score = 28.5 bits (62), Expect = 0.075, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 113 VKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDI 160 V+L + +ALS P+HVV + + P G + + P + ND+ Sbjct: 57 VRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIIL--HSPVLKDNDL 102 >537021.9.peg.409_1 Length = 242 Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 128 PRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187 RH++ T+++T K QT+ A + + + + H I D+ + +E Sbjct: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE----EQSKKLIEEA 172 Query: 188 KK 189 KK Sbjct: 173 KK 174 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 23.5 bits (49), Expect = 2.2, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 92 QVTVSEEVIGDQKVYFQEGMEVKLLIHE 119 ++T E+ I DQ + EG E+ L H+ Sbjct: 555 KITEKEQQINDQNLISNEGKEIHQLYHD 582 >gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 332 Score = 23.1 bits (48), Expect = 3.0, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 10/19 (52%) Query: 167 HINIGDDIVILTEDNSYVE 185 H NIGD++ L Y E Sbjct: 84 HWNIGDEVCALVNGGGYAE 102 >gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 267 Score = 22.7 bits (47), Expect = 4.5, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 154 AILSNDIRTTVPPHINIGDDIVILTEDNSYVER 186 AI + +RT I+ G DI +++NS ++R Sbjct: 186 AISAGPVRTLAGASISNGRDIAAWSKENSPLKR 218 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,128 Number of Sequences: 1233 Number of extensions: 4576 Number of successful extensions: 15 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 8 length of query: 189 length of database: 328,796 effective HSP length: 69 effective length of query: 120 effective length of database: 243,719 effective search space: 29246280 effective search space used: 29246280 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 36 (18.5 bits)