BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781067|ref|YP_003065480.1| elongation factor P
[Candidatus Liberibacter asiaticus str. psy62]
         (189 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62]
          Length = 189

 Score =  386 bits (991), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60
           MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE
Sbjct: 1   MVKVIASAVRKGNVLDVDGKLYIVLVAKNFHPGKGTPITQVEMRRISDGVKVSNRWRTTE 60

Query: 61  QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120
           QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG
Sbjct: 61  QVERAFVEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEVIGDQKVYFQEGMEVKLLIHEG 120

Query: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180
           VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED
Sbjct: 121 VALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTED 180

Query: 181 NSYVERVKK 189
           NSYVERVKK
Sbjct: 181 NSYVERVKK 189


>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score = 28.5 bits (62), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 113 VKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDI 160
           V+L +   +ALS   P+HVV  + +  P   G  +   + P +  ND+
Sbjct: 57  VRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIIL--HSPVLKDNDL 102


>537021.9.peg.409_1 
          Length = 242

 Score = 23.9 bits (50), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 128 PRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187
            RH++ T+++T    K QT+ A  +  +    +   +  H  I D+     +    +E  
Sbjct: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE----EQSKKLIEEA 172

Query: 188 KK 189
           KK
Sbjct: 173 KK 174


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 23.5 bits (49), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 92  QVTVSEEVIGDQKVYFQEGMEVKLLIHE 119
           ++T  E+ I DQ +   EG E+  L H+
Sbjct: 555 KITEKEQQINDQNLISNEGKEIHQLYHD 582


>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 332

 Score = 23.1 bits (48), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 167 HINIGDDIVILTEDNSYVE 185
           H NIGD++  L     Y E
Sbjct: 84  HWNIGDEVCALVNGGGYAE 102


>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 267

 Score = 22.7 bits (47), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 154 AILSNDIRTTVPPHINIGDDIVILTEDNSYVER 186
           AI +  +RT     I+ G DI   +++NS ++R
Sbjct: 186 AISAGPVRTLAGASISNGRDIAAWSKENSPLKR 218


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,128
Number of Sequences: 1233
Number of extensions: 4576
Number of successful extensions: 15
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 189
length of database: 328,796
effective HSP length: 69
effective length of query: 120
effective length of database: 243,719
effective search space: 29246280
effective search space used: 29246280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)