Query gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 21:04:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781068.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2a8j_A Taspase 1, threonine a 14.9 23 0.00068 18.2 -1.2 10 32-41 133-142 (420) 2 >2gez_A L-asparaginase alpha s 14.2 25 0.00073 18.0 -1.2 12 32-43 29-40 (69) 3 >1k2x_A Putative L-asparaginas 12.2 30 0.0009 17.6 -1.3 12 31-42 27-38 (68) 4 >2ptz_A Enolase; lyase, glycol 11.5 66 0.0019 16.0 0.3 17 23-39 2-18 (39) 5 >1apy_A Aspartylglucosaminidas 11.3 33 0.00099 17.4 -1.3 12 32-43 82-93 (121) 6 >3ikw_A Heparin lyase I; polys 9.8 1.7E+02 0.0052 13.9 3.6 26 1-26 151-176 (304) 7 >2gom_A Fibrinogen-binding pro 9.3 26 0.00076 17.9 -2.4 21 19-39 35-55 (61) 8 >2fgy_A Carboxysome shell poly 8.6 1.5E+02 0.0046 14.2 1.3 13 16-28 58-70 (122) 9 >1xdp_A Polyphosphate kinase; 7.5 1.5E+02 0.0044 14.3 0.8 19 9-27 144-162 (206) 10 >2psb_A YERB protein; structur 7.4 2.3E+02 0.0067 13.4 2.7 34 5-38 13-46 (77) No 1 >>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A (A:) Probab=14.85 E-value=23 Score=18.17 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=5.8 Q ss_pred HHCCCCCCEE Q ss_conf 3203682020 Q gi|254781068|r 32 QRNIKNPIQL 41 (43) Q Consensus 32 qrniknpiql 41 (43) -++|||||+| T Consensus 133 v~~vkNPI~l 142 (420) T 2a8j_A 133 LSGIKNPVSV 142 (420) T ss_dssp ECSBSCHHHH T ss_pred CCCCCCHHHH T ss_conf 4577888999 No 2 >>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus} (A:74-142) Probab=14.23 E-value=25 Score=18.01 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=8.9 Q ss_pred HHCCCCCCEECC Q ss_conf 320368202059 Q gi|254781068|r 32 QRNIKNPIQLER 43 (43) Q Consensus 32 qrniknpiqler 43 (43) -+++||||++-| T Consensus 29 v~~v~nPi~~Ar 40 (69) T 2gez_A 29 LSTVLNPISLAR 40 (69) T ss_dssp ESSBSCHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 676587899999 No 3 >>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139) Probab=12.20 E-value=30 Score=17.59 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.9 Q ss_pred HHHCCCCCCEEC Q ss_conf 332036820205 Q gi|254781068|r 31 YQRNIKNPIQLE 42 (43) Q Consensus 31 yqrniknpiqle 42 (43) --++++|||.+- T Consensus 27 ~v~~v~nPi~vA 38 (68) T 1k2x_A 27 GVSHLRNPVLAA 38 (68) T ss_dssp EESSCSCHHHHH T ss_pred ECCCCCCHHHHH T ss_conf 515556789999 No 4 >>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} (A:251-289) Probab=11.51 E-value=66 Score=15.99 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.5 Q ss_pred EECCCHHHHHHCCCCCC Q ss_conf 51110113332036820 Q gi|254781068|r 23 DYDFKKKSYQRNIKNPI 39 (43) Q Consensus 23 dydfkkksyqrniknpi 39 (43) .||-+||.|.-..|||- T Consensus 2 ~yd~~kk~ynltfk~pe 18 (39) T 2ptz_A 2 TYDEKKQQYNLTFKSPE 18 (39) T ss_dssp GEETTTTEEETTTTSSS T ss_pred HCCCCCCCCCCCCCCCC T ss_conf 50055552034212133 No 5 >>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} (A:1-121) Probab=11.27 E-value=33 Score=17.39 Aligned_cols=12 Identities=50% Similarity=0.673 Sum_probs=8.8 Q ss_pred HHCCCCCCEECC Q ss_conf 320368202059 Q gi|254781068|r 32 QRNIKNPIQLER 43 (43) Q Consensus 32 qrniknpiqler 43 (43) -++|||||++-| T Consensus 82 v~~v~nPI~vAr 93 (121) T 1apy_A 82 LRRIKNAIGVAR 93 (121) T ss_dssp ECSCSCHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 675679899999 No 6 >>3ikw_A Heparin lyase I; polysaccharide lyase, beta-jelly roll; 1.30A {Bacteroides thetaiotaomicron} PDB: 3ilr_A* 3imn_A 3in9_A* 3ina_A* (A:1-153,A:224-374) Probab=9.84 E-value=1.7e+02 Score=13.95 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=20.3 Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECC Q ss_conf 98778458998054112089975111 Q gi|254781068|r 1 MDSSSPIALAIQNRQIGGVVRFDYDF 26 (43) Q Consensus 1 mdssspialaiqnrqiggvvrfdydf 26 (43) |-+|.|+||.+|.-.+---+|.|..- T Consensus 151 ~p~sPPLAl~lqGg~~~I~~r~d~~~ 176 (304) T 3ikw_A 151 MPDYPPLAFGFSGGLFYIKANSDRKW 176 (304) T ss_dssp CCCCCSEEEEEETTEEEEEEEEECCS T ss_pred CCCCCCEEEECCCCEEEEEECCCHHH T ss_conf 99999526611585699995571332 No 7 >>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesion/toxin complex; 1.25A {Staphylococcus aureus} (A:) Probab=9.34 E-value=26 Score=17.95 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=17.3 Q ss_pred EEEEEECCCHHHHHHCCCCCC Q ss_conf 899751110113332036820 Q gi|254781068|r 19 VVRFDYDFKKKSYQRNIKNPI 39 (43) Q Consensus 19 vvrfdydfkkksyqrniknpi 39 (43) .+.|.|.++|+..||.|.|-. T Consensus 35 Li~F~~~~~K~~LQ~~ID~VL 55 (61) T 2gom_A 35 LVSFEYKVKKMVLQERIDNVL 55 (61) T ss_dssp HSCGGGHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 777898999999999999999 No 8 >>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus} (A:421-542) Probab=8.65 E-value=1.5e+02 Score=14.20 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=8.9 Q ss_pred CCCEEEEEECCCH Q ss_conf 1208997511101 Q gi|254781068|r 16 IGGVVRFDYDFKK 28 (43) Q Consensus 16 iggvvrfdydfkk 28 (43) |--+|||+||-+- T Consensus 58 iPV~v~f~Yd~rV 70 (122) T 2fgy_A 58 IPIAIHYRYDPNV 70 (122) T ss_dssp EEEEEEEEECTTS T ss_pred CCEEEEEECCCCC T ss_conf 4179985047879 No 9 >>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} (A:105-310) Probab=7.51 E-value=1.5e+02 Score=14.28 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=14.5 Q ss_pred EEEECCCCCCEEEEEECCC Q ss_conf 9980541120899751110 Q gi|254781068|r 9 LAIQNRQIGGVVRFDYDFK 27 (43) Q Consensus 9 laiqnrqiggvvrfdydfk 27 (43) -.+..|+.|-+||+.|+-. T Consensus 144 ~~Lk~Rr~g~~VRLe~~~~ 162 (206) T 1xdp_A 144 SSLKQRLTAEPVRFVYQRD 162 (206) T ss_dssp TTSSTTTSCCCEEEEECTT T ss_pred HHHHHHHHCCCEEEEECCC T ss_conf 9999864054036663367 No 10 >>2psb_A YERB protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, unknown function; 2.10A {Bacillus subtilis} (A:170-227,A:302-320) Probab=7.41 E-value=2.3e+02 Score=13.41 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=24.2 Q ss_pred CCEEEEEECCCCCCEEEEEECCCHHHHHHCCCCC Q ss_conf 8458998054112089975111011333203682 Q gi|254781068|r 5 SPIALAIQNRQIGGVVRFDYDFKKKSYQRNIKNP 38 (43) Q Consensus 5 spialaiqnrqiggvvrfdydfkkksyqrniknp 38 (43) -.|.+..-...+-..|.++||-|-..|.|.-..- T Consensus 13 YniR~DYGT~nvTN~VEY~YDKKae~YtRsSDGV 46 (77) T 2psb_A 13 YNVRVDYGTNNVTNLVEYNYDKKAEFYTRSSDGV 46 (77) T ss_dssp CEEEEECCCSSCCCEEEEEEETTTTEEEEEETTE T ss_pred EEEEEEEEECCCCEEEEEEECCCCCEEEECCCCC T ss_conf 0389997621332146778647677588714883 Done!