Query gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 00:01:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781068.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oxn_A Beta-hexosaminidase; TI 9.7 47 0.002 15.9 -0.2 16 11-26 21-36 (340)
2 2gez_A L-asparaginase alpha su 9.4 31 0.0013 16.8 -1.2 12 32-43 102-113 (195)
3 2gom_A Fibrinogen-binding prot 9.2 18 0.00077 17.9 -2.4 21 19-39 35-55 (61)
4 1k2x_A Putative L-asparaginase 9.0 32 0.0014 16.7 -1.3 12 31-42 98-109 (177)
5 1p4k_A N(4)-(beta-N-acetylgluc 8.7 33 0.0014 16.7 -1.3 11 32-42 82-92 (295)
6 1apy_A Aspartylglucosaminidase 8.5 35 0.0015 16.6 -1.3 12 32-43 82-93 (162)
7 3c17_A L-asparaginase precurso 5.6 60 0.0025 15.5 -1.3 11 32-42 99-109 (320)
8 2fgy_A Carboxysome shell polyp 5.5 1.9E+02 0.0081 13.0 1.3 12 16-27 478-489 (542)
9 2noj_B EFB homologous protein; 5.5 44 0.0018 16.1 -2.0 21 19-39 54-74 (80)
10 2xag_B REST corepressor 1; ami 4.8 1.3E+02 0.0054 13.8 0.0 31 7-37 214-244 (482)
No 1
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=9.65 E-value=47 Score=15.94 Aligned_cols=16 Identities=31% Similarity=0.812 Sum_probs=10.2
Q ss_pred EECCCCCCEEEEEECC
Q ss_conf 8054112089975111
Q gi|254781068|r 11 IQNRQIGGVVRFDYDF 26 (43)
Q Consensus 11 iqnrqiggvvrfdydf 26 (43)
|++-++|||+-|...+
T Consensus 21 i~~~~vGGviLf~~Ni 36 (340)
T 2oxn_A 21 LQHPTVGGVILFGRNY 36 (340)
T ss_dssp HTSTTEEEEEECGGGC
T ss_pred HHCCCCCEEEEECCCC
T ss_conf 8467973899869889
No 2
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus}
Probab=9.39 E-value=31 Score=16.80 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=8.6
Q ss_pred HHCCCCCCEECC
Q ss_conf 320368202059
Q gi|254781068|r 32 QRNIKNPIQLER 43 (43)
Q Consensus 32 qrniknpiqler 43 (43)
-++|||||++-|
T Consensus 102 v~~vknPi~lAr 113 (195)
T 2gez_A 102 LSTVLNPISLAR 113 (195)
T ss_dssp ESSBSCHHHHHH
T ss_pred CCCCCCHHHHHH
T ss_conf 476578799999
No 3
>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesion/toxin complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C
Probab=9.21 E-value=18 Score=17.91 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=17.3
Q ss_pred EEEEEECCCHHHHHHCCCCCC
Q ss_conf 899751110113332036820
Q gi|254781068|r 19 VVRFDYDFKKKSYQRNIKNPI 39 (43)
Q Consensus 19 vvrfdydfkkksyqrniknpi 39 (43)
.+.|.|.++|+..||.|.|-.
T Consensus 35 Li~F~~~~~K~~LQ~~ID~VL 55 (61)
T 2gom_A 35 LVSFEYKVKKMVLQERIDNVL 55 (61)
T ss_dssp HSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 777898999999999999999
No 4
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Probab=9.02 E-value=32 Score=16.73 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.5
Q ss_pred HHHCCCCCCEEC
Q ss_conf 332036820205
Q gi|254781068|r 31 YQRNIKNPIQLE 42 (43)
Q Consensus 31 yqrniknpiqle 42 (43)
.-++|||||.+-
T Consensus 98 ~v~~vknPi~~A 109 (177)
T 1k2x_A 98 GVSHLRNPVLAA 109 (177)
T ss_dssp EESSCSCHHHHH
T ss_pred ECCCCCCHHHHH
T ss_conf 515556789999
No 5
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=8.74 E-value=33 Score=16.67 Aligned_cols=11 Identities=45% Similarity=0.763 Sum_probs=7.4
Q ss_pred HHCCCCCCEEC
Q ss_conf 32036820205
Q gi|254781068|r 32 QRNIKNPIQLE 42 (43)
Q Consensus 32 qrniknpiqle 42 (43)
-++|||||++-
T Consensus 82 v~~vknPI~~A 92 (295)
T 1p4k_A 82 MEHIKNPISVA 92 (295)
T ss_dssp ECSCSCHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 47777799999
No 6
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=8.46 E-value=35 Score=16.58 Aligned_cols=12 Identities=50% Similarity=0.673 Sum_probs=8.3
Q ss_pred HHCCCCCCEECC
Q ss_conf 320368202059
Q gi|254781068|r 32 QRNIKNPIQLER 43 (43)
Q Consensus 32 qrniknpiqler 43 (43)
-++|||||.+-|
T Consensus 82 v~~vknPI~lAr 93 (162)
T 1apy_A 82 LRRIKNAIGVAR 93 (162)
T ss_dssp ECSCSCHHHHHH
T ss_pred CCCCCCHHHHHH
T ss_conf 462467899999
No 7
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase, autoproteolysis; 1.95A {Escherichia coli K12} PDB: 2zak_A
Probab=5.64 E-value=60 Score=15.45 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=7.1
Q ss_pred HHCCCCCCEEC
Q ss_conf 32036820205
Q gi|254781068|r 32 QRNIKNPIQLE 42 (43)
Q Consensus 32 qrniknpiqle 42 (43)
-++|||||.+-
T Consensus 99 v~~vknPI~~A 109 (320)
T 3c17_A 99 VSHLRNPVLAA 109 (320)
T ss_dssp ESSCSCHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 46668789999
No 8
>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus}
Probab=5.54 E-value=1.9e+02 Score=13.00 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=8.3
Q ss_pred CCCEEEEEECCC
Q ss_conf 120899751110
Q gi|254781068|r 16 IGGVVRFDYDFK 27 (43)
Q Consensus 16 iggvvrfdydfk 27 (43)
|--|||||||=+
T Consensus 478 IPVvvrfdY~gr 489 (542)
T 2fgy_A 478 IPIAIHYRYDPN 489 (542)
T ss_dssp EEEEEEEEECTT
T ss_pred CCEEEEEECCCC
T ss_conf 417998504787
No 9
>2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} SCOP: a.7.17.1
Probab=5.50 E-value=44 Score=16.10 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=16.4
Q ss_pred EEEEEECCCHHHHHHCCCCCC
Q ss_conf 899751110113332036820
Q gi|254781068|r 19 VVRFDYDFKKKSYQRNIKNPI 39 (43)
Q Consensus 19 vvrfdydfkkksyqrniknpi 39 (43)
.+.|.|.++|+..||.|.|-.
T Consensus 54 Li~F~~~~~K~~LQ~~ID~VL 74 (80)
T 2noj_B 54 LIHFQHSYEKKKLQRQIDLVL 74 (80)
T ss_dssp HCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 887898999999999999999
No 10
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=4.76 E-value=1.3e+02 Score=13.84 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=0.0
Q ss_pred EEEEEECCCCCCEEEEEECCCHHHHHHCCCC
Q ss_conf 5899805411208997511101133320368
Q gi|254781068|r 7 IALAIQNRQIGGVVRFDYDFKKKSYQRNIKN 37 (43)
Q Consensus 7 ialaiqnrqiggvvrfdydfkkksyqrnikn 37 (43)
|+-.+.++.++-+|+|-|.+||..-.+.+.+
T Consensus 214 i~~~~~~k~~~~~v~~yy~~kk~~~~~~~~~ 244 (482)
T 2xag_B 214 IQQMLPDKSIASLVKFYYSWKKTRTKTSVMD 244 (482)
T ss_dssp -------------------------------
T ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8744499878998887642103542777777
Done!