Query gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:11:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781068.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tr9a_ c.1.8.7 (A:) Beta-hexo 13.3 20 0.0015 16.6 0.1 17 11-27 22-38 (330)
2 d2goma1 a.7.17.1 (A:105-165) F 9.5 10 0.00074 18.0 -2.4 21 19-39 35-55 (61)
3 d2nojb1 a.7.17.1 (B:52-109) Un 8.4 15 0.0011 17.2 -2.0 21 18-38 31-51 (58)
4 d2o8ra2 d.322.1.2 (A:113-317) 7.9 44 0.0032 14.9 0.3 21 7-27 140-160 (205)
5 g1k2x.1 d.153.1.5 (A:,B:) Glyc 7.2 25 0.0018 16.1 -1.3 12 31-42 98-109 (291)
6 d1ej8a_ b.1.8.1 (A:) Copper ch 6.5 1E+02 0.0074 13.2 2.1 16 13-28 20-35 (140)
7 g2gac.1 d.153.1.5 (A:,B:) Glyc 6.5 29 0.0021 15.8 -1.3 10 33-42 81-90 (275)
8 d1xdpa2 d.322.1.2 (A:107-314) 5.6 88 0.0064 13.5 0.8 19 9-27 143-161 (208)
9 d1grja2 d.26.1.2 (A:80-158) Gr 5.4 16 0.0012 17.0 -3.1 23 3-25 43-65 (79)
10 d4bcla_ b.75.1.1 (A:) Bacterio 3.9 1.6E+02 0.012 12.3 2.1 26 16-41 107-132 (359)
No 1
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=13.32 E-value=20 Score=16.55 Aligned_cols=17 Identities=29% Similarity=0.776 Sum_probs=11.3
Q ss_pred EECCCCCCEEEEEECCC
Q ss_conf 80541120899751110
Q gi|254781068|r 11 IQNRQIGGVVRFDYDFK 27 (43)
Q Consensus 11 iqnrqiggvvrfdydfk 27 (43)
|++.++|||+-|...++
T Consensus 22 i~~~~~gGvilf~~N~~ 38 (330)
T d1tr9a_ 22 LQHPTVGGVILFGRNYH 38 (330)
T ss_dssp HTSTTEEEEEECGGGCS
T ss_pred HHCCCCCEEEEECCCCC
T ss_conf 86579748998289999
No 2
>d2goma1 a.7.17.1 (A:105-165) Fibrinogen-binding protein Efb (Fib) {Staphylococcus aureus [TaxId: 1280]}
Probab=9.47 E-value=10 Score=17.98 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=17.3
Q ss_pred EEEEEECCCHHHHHHCCCCCC
Q ss_conf 899751110113332036820
Q gi|254781068|r 19 VVRFDYDFKKKSYQRNIKNPI 39 (43)
Q Consensus 19 vvrfdydfkkksyqrniknpi 39 (43)
.+.|.|.++|+..||.|.|-.
T Consensus 35 Li~F~~~~~K~~LQ~~ID~VL 55 (61)
T d2goma1 35 LVSFEYKVKKMVLQERIDNVL 55 (61)
T ss_dssp HSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 777898999999999999999
No 3
>d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155 {Staphylococcus aureus [TaxId: 1280]}
Probab=8.38 E-value=15 Score=17.24 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=17.1
Q ss_pred CEEEEEECCCHHHHHHCCCCC
Q ss_conf 089975111011333203682
Q gi|254781068|r 18 GVVRFDYDFKKKSYQRNIKNP 38 (43)
Q Consensus 18 gvvrfdydfkkksyqrniknp 38 (43)
..|.|.|..+|+-.|+.|.+-
T Consensus 31 nlv~f~~~~~k~~lq~~id~v 51 (58)
T d2nojb1 31 NLIHFQHSYEKKKLQRQIDLV 51 (58)
T ss_dssp HHCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 576678799999999999999
No 4
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=7.94 E-value=44 Score=14.93 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=15.5
Q ss_pred EEEEEECCCCCCEEEEEECCC
Q ss_conf 589980541120899751110
Q gi|254781068|r 7 IALAIQNRQIGGVVRFDYDFK 27 (43)
Q Consensus 7 ialaiqnrqiggvvrfdydfk 27 (43)
+.-.+..|+.|.+||+.|+-.
T Consensus 140 i~~~Lk~R~~g~~VRLe~~~~ 160 (205)
T d2o8ra2 140 IRKKVKTRKLGAPTRFMYDGR 160 (205)
T ss_dssp ------------CCEEEEETT
T ss_pred HHHHHHHHCCCCCEEEEECCC
T ss_conf 999998514466677644468
No 5
>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Escherichia coli [TaxId: 562]}
Probab=7.23 E-value=25 Score=16.12 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.0
Q ss_pred HHHCCCCCCEEC
Q ss_conf 332036820205
Q gi|254781068|r 31 YQRNIKNPIQLE 42 (43)
Q Consensus 31 yqrniknpiqle 42 (43)
--++|||||.+-
T Consensus 98 ~~~~vknPI~vA 109 (291)
T g1k2x.1 98 GVSHLRNPVLAA 109 (291)
T ss_dssp EESSCSCHHHHH
T ss_pred ECCCHHHHHHHH
T ss_conf 042141399999
No 6
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.54 E-value=1e+02 Score=13.18 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEECCCH
Q ss_conf 5411208997511101
Q gi|254781068|r 13 NRQIGGVVRFDYDFKK 28 (43)
Q Consensus 13 nrqiggvvrfdydfkk 28 (43)
+..|.|+|||--....
T Consensus 20 ~~~V~G~vrf~q~~~~ 35 (140)
T d1ej8a_ 20 DTAVRGLARIVQVGEN 35 (140)
T ss_dssp SCCEEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEECCC
T ss_conf 9952499999997899
No 7
>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Flavobacterium meningosepticum [TaxId: 238]}
Probab=6.45 E-value=29 Score=15.84 Aligned_cols=10 Identities=50% Similarity=0.873 Sum_probs=7.0
Q ss_pred HCCCCCCEEC
Q ss_conf 2036820205
Q gi|254781068|r 33 RNIKNPIQLE 42 (43)
Q Consensus 33 rniknpiqle 42 (43)
++|||||++-
T Consensus 81 ~~iknPi~~A 90 (275)
T g2gac.1 81 EHIKNPISVA 90 (275)
T ss_dssp CSCSCHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 5668789999
No 8
>d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=5.59 E-value=88 Score=13.49 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=13.9
Q ss_pred EEEECCCCCCEEEEEECCC
Q ss_conf 9980541120899751110
Q gi|254781068|r 9 LAIQNRQIGGVVRFDYDFK 27 (43)
Q Consensus 9 laiqnrqiggvvrfdydfk 27 (43)
-+++.|.-|.+||+.|+-.
T Consensus 143 ~~Lk~R~~g~~VRLe~~~~ 161 (208)
T d1xdpa2 143 SSLKQRLTAEPVRFVYQRD 161 (208)
T ss_dssp TTSSTTTSCCCEEEEECTT
T ss_pred HHHHHHHCCCCEEEEECCC
T ss_conf 9999863799789883478
No 9
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.36 E-value=16 Score=17.01 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=17.3
Q ss_pred CCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 77845899805411208997511
Q gi|254781068|r 3 SSSPIALAIQNRQIGGVVRFDYD 25 (43)
Q Consensus 3 ssspialaiqnrqiggvvrfdyd 25 (43)
-+||++-|+-.++.|-.|.+.-.
T Consensus 43 ~~SPlG~ALlG~~~Gd~v~v~~p 65 (79)
T d1grja2 43 VNSPIARGLIGKEEDDVVVIKTP 65 (79)
T ss_dssp SSSHHHHHHTTCBTTCEECC---
T ss_pred ECCHHHHHHHCCCCCCEEEEECC
T ss_conf 27989999739999999999969
No 10
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Probab=3.89 E-value=1.6e+02 Score=12.25 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCHHHHHHCCCCCCEE
Q ss_conf 12089975111011333203682020
Q gi|254781068|r 16 IGGVVRFDYDFKKKSYQRNIKNPIQL 41 (43)
Q Consensus 16 iggvvrfdydfkkksyqrniknpiql 41 (43)
+-|+|---|-++.+.-.||+.||+-+
T Consensus 107 fEGsVvnl~YyRsdavrrNvpnp~ym 132 (359)
T d4bcla_ 107 FEGSVVNMYYYRSDAVRRNIPNPIYM 132 (359)
T ss_dssp EEEEEEEEESCCCHHHHTTCSSCCCC
T ss_pred EEEEEEEEEEECCHHHHHCCCCCEEE
T ss_conf 62048899995014676359986555
Done!