RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Score = 23.1 bits (48), Expect = 7.3 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%) Query: 11 IQNRQIGGVVRFDYDFKKKSYQRNIKNPIQL 41 +Q+ +GGV+ F RN + QL Sbjct: 22 LQHPTVGGVILF---------GRNYHDNQQL 43 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.136 0.377 Gapped Lambda K H 0.267 0.0511 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 154,481 Number of extensions: 3993 Number of successful extensions: 8 Number of sequences better than 10.0: 1 Number of HSP's gapped: 8 Number of HSP's successfully gapped: 3 Length of query: 43 Length of database: 2,407,596 Length adjustment: 16 Effective length of query: 27 Effective length of database: 2,187,916 Effective search space: 59073732 Effective search space used: 59073732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.4 bits)