RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781068|ref|YP_003065481.1| hypothetical protein
CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae
          [TaxId: 666]}
          Length = 330

 Score = 23.1 bits (48), Expect = 7.3
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%)

Query: 11 IQNRQIGGVVRFDYDFKKKSYQRNIKNPIQL 41
          +Q+  +GGV+ F          RN  +  QL
Sbjct: 22 LQHPTVGGVILF---------GRNYHDNQQL 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 154,481
Number of extensions: 3993
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 3
Length of query: 43
Length of database: 2,407,596
Length adjustment: 16
Effective length of query: 27
Effective length of database: 2,187,916
Effective search space: 59073732
Effective search space used: 59073732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)