BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781068|ref|YP_003065481.1| hypothetical protein
CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 43

 Score = 89.4 bits (220), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MDSSSPIALAIQNRQIGGVVRFDYDFKKKSYQRNIKNPIQLER 43
          MDSSSPIALAIQNRQIGGVVRFDYDFKKKSYQRNIKNPIQLER
Sbjct: 1  MDSSSPIALAIQNRQIGGVVRFDYDFKKKSYQRNIKNPIQLER 43


>gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 158

 Score = 23.5 bits (49), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 4   SSPIALAIQNRQIGGVVRFDYDFKKKSYQ 32
           SSPIA A+  +++G ++  +    +K+Y+
Sbjct: 123 SSPIARALIGKELGDIISVNAPGGEKTYE 151


>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 423

 Score = 22.3 bits (46), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 14  RQIGGVVRFDYDFKKKSY 31
           RQ+G +V  D++ + K Y
Sbjct: 351 RQMGTIVALDFNVQNKGY 368


>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 292

 Score = 20.4 bits (41), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 2   DSSSPIALAIQNRQIGGVVRFDYDFKKKSYQRNIKNP 38
           +S++ +   +QN Q  GVV  D   +  S +    NP
Sbjct: 128 NSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNP 164


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,778
Number of Sequences: 1233
Number of extensions: 633
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 43
length of database: 328,796
effective HSP length: 16
effective length of query: 27
effective length of database: 309,068
effective search space:  8344836
effective search space used:  8344836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)