Query gi|254781069|ref|YP_003065482.1| hypothetical protein CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 21:55:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781069.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3f94_A Beta-glucosidase; (alp 53.6 3.7 0.00011 21.5 0.3 25 14-38 100-124 (397)
2 >2oxn_A Beta-hexosaminidase; T 28.6 19 0.00057 18.1 0.7 32 8-39 44-79 (340)
3 >1x38_A Beta-D-glucan exohydro 26.1 26 0.00078 17.4 1.0 22 16-37 87-108 (365)
4 >1hq0_A CNF1, cytotoxic necrot 16.3 99 0.0029 14.7 2.6 27 10-42 128-154 (295)
5 >3fzz_A Granzyme C; hydrolase, 16.3 99 0.0029 14.6 2.5 23 16-38 1-23 (98)
6 >3bmx_A Uncharacterized lipopr 11.8 82 0.0024 15.1 0.9 26 15-40 114-139 (419)
7 >3f1j_A Matrix protein, GP18, 10.1 1.6E+02 0.0046 13.7 1.8 15 17-31 20-34 (142)
8 >1k32_A Tricorn protease; prot 9.9 1.6E+02 0.0048 13.6 2.1 16 20-35 34-49 (51)
9 >1hle_A Horse leukocyte elasta 9.7 1.6E+02 0.0049 13.6 2.1 18 18-35 12-29 (69)
10 >2j3t_D Trafficking protein pa 6.7 1.6E+02 0.0046 13.7 0.6 17 15-31 7-23 (77)
No 1
>>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A (A:1-397)
Probab=53.59 E-value=3.7 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=20.9
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEEE
Q ss_conf 1268669999607862323333220
Q gi|254781069|r 14 ESSYPLMIAIDYEGGEVSRLICTTV 38 (43)
Q Consensus 14 essyplmiaidyeggevsrlicttv 38 (43)
.+..|++|++|-|||.+.|+-+|..
T Consensus 100 ~~giP~li~~D~egG~v~~~~~t~~ 124 (397)
T 3f94_A 100 GIAIPTVWGTDAMHGHSNVYGATLF 124 (397)
T ss_dssp SCCCCCCEEEECSSSSTTSTTCCCC
T ss_pred CCCCCCEEEEECCCCEECCCCCCCC
T ss_conf 5788858998358862568898868
No 2
>>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A (A:)
Probab=28.63 E-value=19 Score=18.08 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=22.2
Q ss_pred HHHHHHH--CCCCEEEEEEECCCEEEEEE--EEEEE
Q ss_conf 5432121--26866999960786232333--32201
Q gi|254781069|r 8 QKVNSVE--SSYPLMIAIDYEGGEVSRLI--CTTVF 39 (43)
Q Consensus 8 qkvnsve--ssyplmiaidyeggevsrli--cttvf 39 (43)
.-+++.. ...|+++++|-|||.++|+- ..|.|
T Consensus 44 ~~~~~lq~~~giP~l~~~D~egG~~~~~~~~~~t~~ 79 (340)
T 2oxn_A 44 ALNKAIRQAAKRPILIGVDQEGGRVQRFREGFSRIP 79 (340)
T ss_dssp HHHHHHHHHHSSCCEEEECEEETTEESCCTTSCCCC
T ss_pred HHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCC
T ss_conf 999999986399968998468874304475456672
No 3
>>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} (A:1-365)
Probab=26.09 E-value=26 Score=17.44 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.2
Q ss_pred CCCEEEEEEECCCEEEEEEEEE
Q ss_conf 6866999960786232333322
Q gi|254781069|r 16 SYPLMIAIDYEGGEVSRLICTT 37 (43)
Q Consensus 16 syplmiaidyeggevsrlictt 37 (43)
-.|+++++|-|||.+.|+-.|.
T Consensus 87 ~iP~~~~~D~e~G~~~~~~~t~ 108 (365)
T 1x38_A 87 GIPMIYGIDAVHGQNNVYGATI 108 (365)
T ss_dssp CCCCEEEECCSSSSTTSTTCCC
T ss_pred CCCCEEEECCCCCEECCCCCCC
T ss_conf 9886798727876246889886
No 4
>>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} (A:)
Probab=16.34 E-value=99 Score=14.65 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=19.1
Q ss_pred HHHHHCCCCEEEEEEECCCEEEEEEEEEEEEEE
Q ss_conf 321212686699996078623233332201230
Q gi|254781069|r 10 VNSVESSYPLMIAIDYEGGEVSRLICTTVFAIT 42 (43)
Q Consensus 10 vnsvessyplmiaidyeggevsrlicttvfait 42 (43)
.+.++..+|+.|. +|..|- ||+++|+.
T Consensus 128 L~~i~~g~pviit----sG~LSG--CT~v~A~K 154 (295)
T 1hq0_A 128 LEEVQEGKPVIIT----SGNLSG--CTTIVARK 154 (295)
T ss_dssp GGGCBTTBCEEEE----CCCBSS--CEEEEEEE
T ss_pred HHHHHCCCCEEEE----CCCCCC--CEEEEEEC
T ss_conf 6576359967994----377567--53788704
No 5
>>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A (A:11-108)
Probab=16.32 E-value=99 Score=14.65 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.8
Q ss_pred CCCEEEEEEECCCEEEEEEEEEE
Q ss_conf 68669999607862323333220
Q gi|254781069|r 16 SYPLMIAIDYEGGEVSRLICTTV 38 (43)
Q Consensus 16 syplmiaidyeggevsrlicttv 38 (43)
|||-|.++-|..+.-...+|.-.
T Consensus 1 s~Pw~v~l~~~~~~~~~~~CgGs 23 (98)
T 3fzz_A 1 SRPYMAYYEFLKVGGKKMFCGGF 23 (98)
T ss_dssp SSTTEEEEEEECSSSCEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEE
T ss_conf 98868999999779993799999
No 6
>>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419)
Probab=11.82 E-value=82 Score=15.06 Aligned_cols=26 Identities=50% Similarity=0.683 Sum_probs=20.6
Q ss_pred CCCCEEEEEEECCCEEEEEEEEEEEE
Q ss_conf 26866999960786232333322012
Q gi|254781069|r 15 SSYPLMIAIDYEGGEVSRLICTTVFA 40 (43)
Q Consensus 15 ssyplmiaidyeggevsrlicttvfa 40 (43)
..-|++|++|-|||-+.++--.|.|.
T Consensus 114 ~giP~~i~~D~~~g~~~~~~~~t~~P 139 (419)
T 3bmx_A 114 PKIPLMLSIDQEGGIVTRLGEGTNFP 139 (419)
T ss_dssp SSSCCEEEECCCBTTBCCCSSSCCCC
T ss_pred CCCCCEEEECCCCCEEECCCCCCCCC
T ss_conf 99794799826998102289987898
No 7
>>3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus} (A:)
Probab=10.07 E-value=1.6e+02 Score=13.70 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=11.8
Q ss_pred CCEEEEEEECCCEEE
Q ss_conf 866999960786232
Q gi|254781069|r 17 YPLMIAIDYEGGEVS 31 (43)
Q Consensus 17 yplmiaidyeggevs 31 (43)
-.||..||+-||.-.
T Consensus 20 ptlmleidfvggts~ 34 (142)
T 3f1j_A 20 PTLXLEIDFVGGTSR 34 (142)
T ss_dssp CEEEEEEECSSSSSC
T ss_pred CEEEEEEECCCCCCC
T ss_conf 627999870478545
No 8
>>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} (A:153-203)
Probab=9.94 E-value=1.6e+02 Score=13.64 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=12.6
Q ss_pred EEEEEECCCEEEEEEE
Q ss_conf 9999607862323333
Q gi|254781069|r 20 MIAIDYEGGEVSRLIC 35 (43)
Q Consensus 20 miaidyeggevsrlic 35 (43)
-+=||.+|||..||+-
T Consensus 34 klWi~~~ggeF~rl~d 49 (51)
T 1k32_A 34 KIWIEVNSGAFKKIVD 49 (51)
T ss_dssp EEEEEEETTEEEEEEC
T ss_pred EEEEECCCCCEEEEEC
T ss_conf 3999889996689744
No 9
>>1hle_A Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} (A:203-271)
Probab=9.68 E-value=1.6e+02 Score=13.59 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.4
Q ss_pred CEEEEEEECCCEEEEEEE
Q ss_conf 669999607862323333
Q gi|254781069|r 18 PLMIAIDYEGGEVSRLIC 35 (43)
Q Consensus 18 plmiaidyeggevsrlic 35 (43)
--++.+.|+|++.|-+|-
T Consensus 12 a~vleLPY~~~~~SM~Ii 29 (69)
T 1hle_A 12 CRVLELPYQGKELSMIIL 29 (69)
T ss_dssp TEEEEEEEBTTSSEEEEE
T ss_pred CEEEEEECCCCCCEEEEE
T ss_conf 348999432797289999
No 10
>>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport, alternative splicing, golgi apparatus; HET: P1L; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A (D:26-102)
Probab=6.68 E-value=1.6e+02 Score=13.70 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=11.4
Q ss_pred CCCCEEEEEEECCCEEE
Q ss_conf 26866999960786232
Q gi|254781069|r 15 SSYPLMIAIDYEGGEVS 31 (43)
Q Consensus 15 ssyplmiaidyeggevs 31 (43)
-||||-+..+|+...++
T Consensus 7 fsyPLdl~L~~~d~kvv 23 (77)
T 2j3t_D 7 FSYPLDLLLKLHDERVL 23 (77)
T ss_dssp ECSSCSSEEEECSSSEE
T ss_pred CCCCCCCCCCCCCCCEE
T ss_conf 67776443245666357
Done!