RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781069|ref|YP_003065482.1| hypothetical protein
CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III
          (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 232

 Score = 24.7 bits (52), Expect = 2.0
 Identities = 4/20 (20%), Positives = 8/20 (40%)

Query: 16 SYPLMIAIDYEGGEVSRLIC 35
          S+   +++ YE        C
Sbjct: 1  SWSWQVSLQYEKDGAFHHTC 20


>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae
          [TaxId: 666]}
          Length = 330

 Score = 23.8 bits (50), Expect = 4.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 15 SSYPLMIAIDYEGGEVSRLIC 35
          +  P++I +D EGG V R   
Sbjct: 54 AKRPILIGVDQEGGRVQRFRE 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 128,178
Number of extensions: 2895
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 2
Length of query: 43
Length of database: 2,407,596
Length adjustment: 16
Effective length of query: 27
Effective length of database: 2,187,916
Effective search space: 59073732
Effective search space used: 59073732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)