RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781069|ref|YP_003065482.1| hypothetical protein CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) >d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Score = 24.7 bits (52), Expect = 2.0 Identities = 4/20 (20%), Positives = 8/20 (40%) Query: 16 SYPLMIAIDYEGGEVSRLIC 35 S+ +++ YE C Sbjct: 1 SWSWQVSLQYEKDGAFHHTC 20 >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Score = 23.8 bits (50), Expect = 4.1 Identities = 8/21 (38%), Positives = 12/21 (57%) Query: 15 SSYPLMIAIDYEGGEVSRLIC 35 + P++I +D EGG V R Sbjct: 54 AKRPILIGVDQEGGRVQRFRE 74 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.127 0.339 Gapped Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 128,178 Number of extensions: 2895 Number of successful extensions: 10 Number of sequences better than 10.0: 1 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 2 Length of query: 43 Length of database: 2,407,596 Length adjustment: 16 Effective length of query: 27 Effective length of database: 2,187,916 Effective search space: 59073732 Effective search space used: 59073732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 47 (22.7 bits)