Query gi|254781070|ref|YP_003065483.1| hypothetical protein CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs 111 out of 1149
Neff 5.7
Searched_HMMs 33803
Date Wed Jun 1 22:34:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781070.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3bmx_A Uncharacterized lipopr 99.4 6.4E-13 1.9E-17 94.7 5.2 55 1-56 160-214 (419)
2 >3f94_A Beta-glucosidase; (alp 99.3 8.8E-13 2.6E-17 93.9 4.8 54 1-56 146-199 (397)
3 >2oxn_A Beta-hexosaminidase; T 99.2 2.6E-11 7.6E-16 85.6 5.1 53 1-56 101-153 (340)
4 >2wt3_A Beta-glucosidase; hydr 99.2 2.5E-11 7.4E-16 85.7 5.0 54 1-56 103-156 (721)
5 >1x38_A Beta-D-glucan exohydro 98.6 2.2E-09 6.5E-14 74.6 -1.1 46 1-48 131-176 (365)
6 >1v54_K IHQ, cytochrome C oxid 56.0 4.9 0.00015 21.6 1.3 19 3-21 31-49 (56)
7 >3a3d_A PBP4, penicillin-bindi 18.2 83 0.0025 14.6 5.0 52 1-55 41-93 (121)
8 >2hye_C Cullin-4A, CUL-4A; bet 17.0 89 0.0026 14.4 3.3 26 32-57 81-106 (106)
9 >2a6h_C DNA-directed RNA polym 16.8 45 0.0013 16.1 0.7 14 1-14 11-24 (42)
10 >1xi4_A Clathrin heavy chain; 16.2 88 0.0026 14.5 2.0 20 33-52 28-47 (49)
No 1
>>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419)
Probab=99.36 E-value=6.4e-13 Score=94.73 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=51.4
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
+|+|++++||||+|+||+|+.+++.+..++ .|+||+||..|++++.+|++|+|++
T Consensus 160 ~g~e~~a~Gi~~~~aPv~Di~~~p~~~r~~-~e~fgeDP~lv~~~~~a~v~G~q~~ 214 (419)
T 3bmx_A 160 IGKELSALGINTDFSPVVDINNNPDNPVIG-VRSFSSNRELTSRLGLYTMKGLQRQ 214 (419)
T ss_dssp HHHHHHHHTCCEECCCBCCCCCCTTCSSSG-GGSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEECCEECCCCCCCCCCCC-CCCCCCCHHHCCHHHHHHEECCHHH
T ss_conf 999999819998853666456786547456-6665557112101024520022023
No 2
>>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A (A:1-397)
Probab=99.34 E-value=8.8e-13 Score=93.93 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=50.3
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
||+||+++||||+|+||+|+.+++++.++ .|+||+||..|++++.+|++|+|.|
T Consensus 146 ~a~e~~a~Gi~~~~aP~~Di~~~p~~~r~--~rsfGeDp~lv~~~a~a~v~GlQ~~ 199 (397)
T 3f94_A 146 TAKEVAATGIEWSFAPTVAVVRDDRWGRT--YESYSEDPDLVKRYAGEMVTGIQGD 199 (397)
T ss_dssp HHHHHHTTTCCEEEEEECCCCSCTTSTTG--GGSSCSCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCEEECCEEECCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999981989885464856789987754--4465788579999999999644145
No 3
>>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A (A:)
Probab=99.18 E-value=2.6e-11 Score=85.63 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=47.9
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
+|+||+++|||++|+||+|+..+++.. . .|+||+||..+++++.+|++|++++
T Consensus 101 ~a~e~~~~Gi~~~laP~~di~~~~~~r--~-~~~fgedp~l~~~~~~a~v~G~q~~ 153 (340)
T 2oxn_A 101 MAAELIAHDVDLSFAPVLDMGFACKAI--G-NRAFGEDVQTVLKHSSAFLRGMKAV 153 (340)
T ss_dssp HHHHHHTTTCCEECCCBCCCCSCSTTT--G-GGSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCC--C-CCCCCCCHHHHHHHHHHEEECCCCC
T ss_conf 999999838984410111355555422--0-0025743007887554506471244
No 4
>>2wt3_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2wt6_A 2x40_A 2x41_A* 2x42_A* 2wt5_A* (A:)
Probab=99.17 E-value=2.5e-11 Score=85.69 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=50.7
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
||+|++++|+||+|+|++|+.++|++.++ .|+||+||..+++++.+|++|+|++
T Consensus 103 ~~~e~~~~G~~~~~~P~~d~~~~p~~gr~--~e~~Gedp~l~~~~~~a~v~g~q~~ 156 (721)
T 2wt3_A 103 MGEEVREYGVDVLLAPAMNIHRNPLCGRN--FEYYSEDPVLSGEMASSFVKGVQSQ 156 (721)
T ss_dssp HHHHHHHTTCSEECCCBCCCCCSTTCTTG--GGSCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999981929996162666579977666--0472789899999999999988657
No 5
>>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} (A:1-365)
Probab=98.64 E-value=2.2e-09 Score=74.64 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=40.9
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHH
Q ss_conf 968999618961221145004688787141367758888999999999
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQL 48 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~a 48 (58)
+|+|++++|||++|+||+|+.+++.+... .++||+||..++.++..
T Consensus 131 ~a~e~~a~Gi~~~~aP~~di~~~p~~~r~--~e~~geDP~l~~~~~a~ 176 (365)
T 1x38_A 131 TALEVRATGIQYAFAPCIAVCRDPRWGRC--YESYSEDRRIVQSMTEL 176 (365)
T ss_dssp HHHHHHHTTCCEECCCBCCCCSCTTSTTG--GGSSCSSHHHHHHGGGH
T ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHC
T ss_conf 98788753970110234544444434664--55767787999998740
No 6
>>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (K:)
Probab=55.98 E-value=4.9 Score=21.57 Aligned_cols=19 Identities=32% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHCCCCCCCCEEEEEC
Q ss_conf 8999618961221145004
Q gi|254781070|r 3 KNLVTSGINVNFSPVLDLL 21 (58)
Q Consensus 3 ~~L~~~Gin~n~aPVlDi~ 21 (58)
..+-++||.||++||=-|.
T Consensus 31 yv~TQ~GIeWnlSPVGrVt 49 (56)
T 1v54_K 31 YMATQIGIEWNPSPVGRVT 49 (56)
T ss_dssp HHHHHSCCCCCCCCTTTCC
T ss_pred HHEEEEEEEECCCCCCCCC
T ss_conf 3124200136466544337
No 7
>>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272)
Probab=18.22 E-value=83 Score=14.61 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=34.2
Q ss_pred CHHHHHHCCCCCCC-CEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 96899961896122-11450046887871413677588889999999999999986
Q gi|254781070|r 1 MAKNLVTSGINVNF-SPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIK 55 (58)
Q Consensus 1 iA~~L~~~Gin~n~-aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~ 55 (58)
|+++|++.||+-.- --++|-..-....+.- +.++++||..- -+.+|.+.+.+
T Consensus 41 la~~Lk~~GI~~I~G~iiiD~S~f~~~~~~p-gw~~~D~pa~~--aa~~f~~~l~~ 93 (121)
T 3a3d_A 41 LLAELKKQGIKKINGDLVLDTSVFSSHDRGL-GWIWNDNTDAY--AAAIIQRQLRK 93 (121)
T ss_dssp HHHHHHHTTCCEECSCEEEECTTBCSCSSCT-TCBGGGCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHCCCEECCCEEECCCCCCCCCCCC-CCCCCCCHHHH--HHHHHHHHHHH
T ss_conf 9999996187524043230233256654577-76435673667--99999999986
No 8
>>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} (C:297-402)
Probab=17.05 E-value=89 Score=14.44 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 67758888999999999999998678
Q gi|254781070|r 32 RSIFSRIPAKAEESAQLFSRTYIKNP 57 (58)
Q Consensus 32 ~Rsfg~dp~~V~~~a~afi~~~~~n~ 57 (58)
.+||+.||.-...+-.||-.=..+||
T Consensus 81 ~~~F~~d~~f~~al~~afe~fiN~np 106 (106)
T 2hye_C 81 EVCFQKNERFVNLMKESFETFINKRP 106 (106)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 98736746899999999999983784
No 9
>>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (C:1078-1119)
Probab=16.76 E-value=45 Score=16.10 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.2
Q ss_pred CHHHHHHCCCCCCC
Q ss_conf 96899961896122
Q gi|254781070|r 1 MAKNLVTSGINVNF 14 (58)
Q Consensus 1 iA~~L~~~Gin~n~ 14 (58)
+-+||+++|+|+.+
T Consensus 11 L~kElqsLgLdv~~ 24 (42)
T 2a6h_C 11 LVKELQALALDVQT 24 (42)
T ss_dssp HHHHHHHSSCEECC
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999867787499
No 10
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:952-1000)
Probab=16.22 E-value=88 Score=14.47 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 77588889999999999999
Q gi|254781070|r 33 SIFSRIPAKAEESAQLFSRT 52 (58)
Q Consensus 33 Rsfg~dp~~V~~~a~afi~~ 52 (58)
=.=+.||+.|+--.+|||.+
T Consensus 28 lpEs~~pe~VS~tVkAFm~a 47 (49)
T 1xi4_A 28 LSETQDPEEVSVTVKAFMTA 47 (49)
T ss_pred CCCCCCHHHHHHHHHHHHHC
T ss_conf 78879879989999999958
Done!