Query         gi|254781070|ref|YP_003065483.1| hypothetical protein CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs    111 out of 1149
Neff          5.7 
Searched_HMMs 23785
Date          Wed Jun  1 00:04:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781070.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2oxn_A Beta-hexosaminidase; TI  99.5 1.9E-14 7.8E-19  102.6   4.8   53    1-56    101-153 (340)
  2 2x41_A Beta-glucosidase; hydro  99.4 3.3E-13 1.4E-17   95.5   5.0   54    1-56    103-156 (721)
  3 3f94_A Beta-glucosidase; (alph  99.2 4.3E-12 1.8E-16   89.2   4.8   54    1-56    146-199 (822)
  4 3bmx_A Uncharacterized lipopro  99.2   6E-12 2.5E-16   88.3   5.2   56    1-57    160-215 (642)
  5 3abz_A Beta-glucosidase I; gly  99.2   1E-11 4.3E-16   87.0   5.0   54    1-56     86-139 (845)
  6 1x38_A Beta-D-glucan exohydrol  98.8 1.2E-09 5.2E-14   75.2   3.5   51    1-54    131-181 (602)
  7 1v54_K IHQ, cytochrome C oxida  52.6     4.3 0.00018   21.1   1.3   19    3-21     31-49  (56)
  8 2ww5_A LYTC autolysin, 1,4-bet  44.2      20 0.00083   17.3   5.9   51    3-56    347-397 (468)
  9 2pb9_A Phosphomethylpyrimidine  34.1      16 0.00069   17.7   1.9   29   26-57    166-194 (195)
 10 3keo_A Redox-sensing transcrip  24.5      17  0.0007   17.7   0.6   27    2-30    165-193 (212)
 11 2wsk_A Glycogen debranching en  22.1      48   0.002   15.1   3.4   53    3-56    186-254 (657)

No 1  
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=99.48  E-value=1.9e-14  Score=102.57  Aligned_cols=53  Identities=21%  Similarity=0.310  Sum_probs=47.2

Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r    1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN   56 (58)
Q Consensus         1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n   56 (58)
                      +|+||+++|||||||||+|+..++  .+++ +||||+||+.|++++.+|++|++++
T Consensus       101 ~~~el~~~Gin~~~aPv~Dv~~~~--~~i~-~rsfg~Dp~~v~~~~~a~i~G~q~~  153 (340)
T 2oxn_A          101 MAAELIAHDVDLSFAPVLDMGFAC--KAIG-NRAFGEDVQTVLKHSSAFLRGMKAV  153 (340)
T ss_dssp             HHHHHHTTTCCEECCCBCCCCSCS--TTTG-GGSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCC--CCEE-CCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999999829980557653666566--7311-1368889899999899986130223


No 2  
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=99.37  E-value=3.3e-13  Score=95.48  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r    1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN   56 (58)
Q Consensus         1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n   56 (58)
                      ||+|++++||||+||||+||.++|.+..  ..|+||+||..|++++.+|++|+|++
T Consensus       103 ~~~e~ra~Gi~~~~aP~~dv~~~p~~gr--~~etfgeDp~l~~~~~~a~v~G~q~~  156 (721)
T 2x41_A          103 MGEEVREYGVDVLLAPAMNIHRNPLCGR--NFEYYSEDPVLSGEMASSFVKGVQSQ  156 (721)
T ss_dssp             HHHHHHHTTCSEECCCBCCCCCSTTCTT--GGGSCCSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9999998593988416063667997766--41063789899999999999645658


No 3  
>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A
Probab=99.25  E-value=4.3e-12  Score=89.18  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r    1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN   56 (58)
Q Consensus         1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n   56 (58)
                      ||+|++++||||+|||++||.++++...  ..|+||+||..|++++.+|++|+|.+
T Consensus       146 ~a~E~ra~Gin~~~aP~vdv~rdpr~gR--~~esfgeDP~lv~~~a~a~v~G~q~~  199 (822)
T 3f94_A          146 TAKEVAATGIEWSFAPTVAVVRDDRWGR--TYESYSEDPDLVKRYAGEMVTGIQGD  199 (822)
T ss_dssp             HHHHHHTTTCCEEEEEECCCCSCTTSTT--GGGSSCSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCEEECCEECCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9999998696989647673588998777--53376789899999999999877425


No 4  
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
Probab=99.24  E-value=6e-12  Score=88.34  Aligned_cols=56  Identities=23%  Similarity=0.329  Sum_probs=51.9

Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             968999618961221145004688787141367758888999999999999998678
Q gi|254781070|r    1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKNP   57 (58)
Q Consensus         1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n~   57 (58)
                      +|+|++++||||+|+||+|+.++|++..+. .|+||+||..|..++.+|++|++++-
T Consensus       160 ~~~E~~a~Gi~~~~aP~~dv~~~p~~gr~~-~~~~gedp~l~~~~~~a~i~g~q~~~  215 (642)
T 3bmx_A          160 IGKELSALGINTDFSPVVDINNNPDNPVIG-VRSFSSNRELTSRLGLYTMKGLQRQD  215 (642)
T ss_dssp             HHHHHHHHTCCEECCCBCCCCCCTTCSSSG-GGSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCEEECCEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             999999809998864776356787546015-54565662454566666540541022


No 5  
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=99.21  E-value=1e-11  Score=87.02  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r    1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN   56 (58)
Q Consensus         1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n   56 (58)
                      ||+|+|+.||||+||||+||.++|.+.  +..|+||+||..+++++.+|++|+|++
T Consensus        86 ~~~E~ra~G~~~~laP~~di~r~p~~g--R~~e~fgeDP~l~~~~~~a~v~G~q~~  139 (845)
T 3abz_A           86 MAKESIAKNAAVILGPTTNMQRGPLGG--RGFESFSEDPYLAGMATSSVVKGMQGE  139 (845)
T ss_dssp             HHHHHHHTTCSEEECCBCCCCSSTTCT--TGGGSCCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             999999829999964614676799877--474063779999999999999986109


No 6  
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A*
Probab=98.84  E-value=1.2e-09  Score=75.21  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             968999618961221145004688787141367758888999999999999998
Q gi|254781070|r    1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYI   54 (58)
Q Consensus         1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~   54 (58)
                      ||+|++++||||+|+||+||.++|++..+  .|+||+||..|++++. ++.+++
T Consensus       131 ~~~E~ra~Gin~~~aP~~dv~~~p~~gr~--~e~~geDp~l~~~~~~-~v~~~~  181 (602)
T 1x38_A          131 TALEVRATGIQYAFAPCIAVCRDPRWGRC--YESYSEDRRIVQSMTE-LIPGLQ  181 (602)
T ss_dssp             HHHHHHHTTCCEECCCBCCCCSCTTSTTG--GGSSCSSHHHHHHGGG-HHHHHH
T ss_pred             HHHHHHHHCCCEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHH-CCCCCH
T ss_conf             99999980997763354345678876742--4566788799999973-267412


No 7  
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* 3ag3_K* ...
Probab=52.56  E-value=4.3  Score=21.07  Aligned_cols=19  Identities=32%  Similarity=0.188  Sum_probs=15.0

Q ss_pred             HHHHHCCCCCCCCEEEEEC
Q ss_conf             8999618961221145004
Q gi|254781070|r    3 KNLVTSGINVNFSPVLDLL   21 (58)
Q Consensus         3 ~~L~~~Gin~n~aPVlDi~   21 (58)
                      ..+-++||-|||+||=-|.
T Consensus        31 y~~TQ~gIewnlSpVGrVt   49 (56)
T 1v54_K           31 YMATQIGIEWNPSPVGRVT   49 (56)
T ss_dssp             HHHHHSCCCCCCCCTTTCC
T ss_pred             EEEEEEEEEECCCCCCCCC
T ss_conf             0246434566467644337


No 8  
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=44.22  E-value=20  Score=17.28  Aligned_cols=51  Identities=8%  Similarity=-0.005  Sum_probs=37.8

Q ss_pred             HHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             899961896122114500468878714136775888899999999999999867
Q gi|254781070|r    3 KNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN   56 (58)
Q Consensus         3 ~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n   56 (58)
                      +.++..+....+.|+||+-....  . ...+.-..+++.+.+.+.+|++...+.
T Consensus       347 ~~~~~~~~~~~~pv~lDvE~~~~--~-~~~~~~~~~~~~~~~~~~~f~~~v~~~  397 (468)
T 2ww5_A          347 ELIKKYNMNLSYPIYYDVENWEY--V-NKSKRAPSDTDTWVKIINKYMDTMKQA  397 (468)
T ss_dssp             HHHHHTTCCCSSCEEEECCCCBC--T-TSSCBCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCCCEEEEEECCCC--C-CCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             86121167887876999862777--7-875457789999999999999999973


No 9  
>2pb9_A Phosphomethylpyrimidine kinase; phosphate, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.70A {Pyrococcus furiosus} SCOP: c.74.1.2
Probab=34.06  E-value=16  Score=17.73  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=23.9

Q ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             87141367758888999999999999998678
Q gi|254781070|r   26 TFIAQKRSIFSRIPAKAEESAQLFSRTYIKNP   57 (58)
Q Consensus        26 ~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n~   57 (58)
                      -|++   |=||.||..|++-....+++|+.|-
T Consensus       166 EP~i---~vfg~~p~evv~kv~~l~~~~~~~~  194 (195)
T 2pb9_A          166 EPMI---LVFGRNPREVLEKIKMLIEGHHHHH  194 (195)
T ss_dssp             CCEE---EEEESSHHHHHHHHHHTC-------
T ss_pred             CCEE---EEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             8889---9989999999999999997541247


No 10 
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=24.48  E-value=17  Score=17.72  Aligned_cols=27  Identities=48%  Similarity=0.746  Sum_probs=18.7

Q ss_pred             HHHHHHCCCC--CCCCEEEEECCCCCCCEEC
Q ss_conf             6899961896--1221145004688787141
Q gi|254781070|r    2 AKNLVTSGIN--VNFSPVLDLLYGPETFIAQ   30 (58)
Q Consensus         2 A~~L~~~Gin--~n~aPVlDi~~~~~~~i~~   30 (58)
                      |..|.+.||.  |||||+. +.. |++.+..
T Consensus       165 ad~Lv~~GIk~IlNFap~~-L~v-P~~V~V~  193 (212)
T 3keo_A          165 ADILVKAGIKGILSFSPVH-LTL-PKDIIVQ  193 (212)
T ss_dssp             HHHHHHHTCCEEEECSSSC-CCC-CTTSEEE
T ss_pred             HHHHHHHCCEEEEECCCCC-CCC-CCCCEEE
T ss_conf             9999982997999868854-579-8996899


No 11 
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=22.11  E-value=48  Score=15.10  Aligned_cols=53  Identities=21%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             HHHHHCCCC-CCCCEEEEEC---------------CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             899961896-1221145004---------------68878714136775888899999999999999867
Q gi|254781070|r    3 KNLVTSGIN-VNFSPVLDLL---------------YGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN   56 (58)
Q Consensus         3 ~~L~~~Gin-~n~aPVlDi~---------------~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n   56 (58)
                      .-|+.+||| +=|.||.+-.               +++.+.-. .+.+||.+|..-.+==+.+|+..+++
T Consensus       186 dYLk~LGvtaI~L~Pi~e~~~~~~~~~~~~~~~wGYd~~~y~a-~d~~yGt~p~~~~~dfk~LV~~aH~~  254 (657)
T 2wsk_A          186 NYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFA-LHPAYACSPETALDEFRDAIKALHKA  254 (657)
T ss_dssp             HHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEE-ECGGGCSSGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             8999748988997896306887543456776777837653535-67322557775499999999999855


Done!