Query gi|254781070|ref|YP_003065483.1| hypothetical protein CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 58 No_of_seqs 111 out of 1149 Neff 5.7 Searched_HMMs 23785 Date Wed Jun 1 00:04:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781070.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2oxn_A Beta-hexosaminidase; TI 99.5 1.9E-14 7.8E-19 102.6 4.8 53 1-56 101-153 (340) 2 2x41_A Beta-glucosidase; hydro 99.4 3.3E-13 1.4E-17 95.5 5.0 54 1-56 103-156 (721) 3 3f94_A Beta-glucosidase; (alph 99.2 4.3E-12 1.8E-16 89.2 4.8 54 1-56 146-199 (822) 4 3bmx_A Uncharacterized lipopro 99.2 6E-12 2.5E-16 88.3 5.2 56 1-57 160-215 (642) 5 3abz_A Beta-glucosidase I; gly 99.2 1E-11 4.3E-16 87.0 5.0 54 1-56 86-139 (845) 6 1x38_A Beta-D-glucan exohydrol 98.8 1.2E-09 5.2E-14 75.2 3.5 51 1-54 131-181 (602) 7 1v54_K IHQ, cytochrome C oxida 52.6 4.3 0.00018 21.1 1.3 19 3-21 31-49 (56) 8 2ww5_A LYTC autolysin, 1,4-bet 44.2 20 0.00083 17.3 5.9 51 3-56 347-397 (468) 9 2pb9_A Phosphomethylpyrimidine 34.1 16 0.00069 17.7 1.9 29 26-57 166-194 (195) 10 3keo_A Redox-sensing transcrip 24.5 17 0.0007 17.7 0.6 27 2-30 165-193 (212) 11 2wsk_A Glycogen debranching en 22.1 48 0.002 15.1 3.4 53 3-56 186-254 (657) No 1 >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Probab=99.48 E-value=1.9e-14 Score=102.57 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=47.2 Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 96899961896122114500468878714136775888899999999999999867 Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58) Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58) +|+||+++|||||||||+|+..++ .+++ +||||+||+.|++++.+|++|++++ T Consensus 101 ~~~el~~~Gin~~~aPv~Dv~~~~--~~i~-~rsfg~Dp~~v~~~~~a~i~G~q~~ 153 (340) T 2oxn_A 101 MAAELIAHDVDLSFAPVLDMGFAC--KAIG-NRAFGEDVQTVLKHSSAFLRGMKAV 153 (340) T ss_dssp HHHHHHTTTCCEECCCBCCCCSCS--TTTG-GGSSCSSHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCCCCCCCCCCCCCC--CCEE-CCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 999999829980557653666566--7311-1368889899999899986130223 No 2 >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Probab=99.37 E-value=3.3e-13 Score=95.48 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=49.2 Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 96899961896122114500468878714136775888899999999999999867 Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58) Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58) ||+|++++||||+||||+||.++|.+.. ..|+||+||..|++++.+|++|+|++ T Consensus 103 ~~~e~ra~Gi~~~~aP~~dv~~~p~~gr--~~etfgeDp~l~~~~~~a~v~G~q~~ 156 (721) T 2x41_A 103 MGEEVREYGVDVLLAPAMNIHRNPLCGR--NFEYYSEDPVLSGEMASSFVKGVQSQ 156 (721) T ss_dssp HHHHHHHTTCSEECCCBCCCCCSTTCTT--GGGSCCSSHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 9999998593988416063667997766--41063789899999999999645658 No 3 >3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A Probab=99.25 E-value=4.3e-12 Score=89.18 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=48.8 Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 96899961896122114500468878714136775888899999999999999867 Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58) Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58) ||+|++++||||+|||++||.++++... ..|+||+||..|++++.+|++|+|.+ T Consensus 146 ~a~E~ra~Gin~~~aP~vdv~rdpr~gR--~~esfgeDP~lv~~~a~a~v~G~q~~ 199 (822) T 3f94_A 146 TAKEVAATGIEWSFAPTVAVVRDDRWGR--TYESYSEDPDLVKRYAGEMVTGIQGD 199 (822) T ss_dssp HHHHHHTTTCCEEEEEECCCCSCTTSTT--GGGSSCSCHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHCCCEEECCEECCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 9999998696989647673588998777--53376789899999999999877425 No 4 >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* Probab=99.24 E-value=6e-12 Score=88.34 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=51.9 Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 968999618961221145004688787141367758888999999999999998678 Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKNP 57 (58) Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n~ 57 (58) +|+|++++||||+|+||+|+.++|++..+. .|+||+||..|..++.+|++|++++- T Consensus 160 ~~~E~~a~Gi~~~~aP~~dv~~~p~~gr~~-~~~~gedp~l~~~~~~a~i~g~q~~~ 215 (642) T 3bmx_A 160 IGKELSALGINTDFSPVVDINNNPDNPVIG-VRSFSSNRELTSRLGLYTMKGLQRQD 215 (642) T ss_dssp HHHHHHHHTCCEECCCBCCCCCCTTCSSSG-GGSSCSSHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCEEECCEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCCHHH T ss_conf 999999809998864776356787546015-54565662454566666540541022 No 5 >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Probab=99.21 E-value=1e-11 Score=87.02 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=48.9 Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 96899961896122114500468878714136775888899999999999999867 Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58) Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58) ||+|+|+.||||+||||+||.++|.+. +..|+||+||..+++++.+|++|+|++ T Consensus 86 ~~~E~ra~G~~~~laP~~di~r~p~~g--R~~e~fgeDP~l~~~~~~a~v~G~q~~ 139 (845) T 3abz_A 86 MAKESIAKNAAVILGPTTNMQRGPLGG--RGFESFSEDPYLAGMATSSVVKGMQGE 139 (845) T ss_dssp HHHHHHHTTCSEEECCBCCCCSSTTCT--TGGGSCCSSHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 999999829999964614676799877--474063779999999999999986109 No 6 >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Probab=98.84 E-value=1.2e-09 Score=75.21 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=44.2 Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 968999618961221145004688787141367758888999999999999998 Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYI 54 (58) Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~ 54 (58) ||+|++++||||+|+||+||.++|++..+ .|+||+||..|++++. ++.+++ T Consensus 131 ~~~E~ra~Gin~~~aP~~dv~~~p~~gr~--~e~~geDp~l~~~~~~-~v~~~~ 181 (602) T 1x38_A 131 TALEVRATGIQYAFAPCIAVCRDPRWGRC--YESYSEDRRIVQSMTE-LIPGLQ 181 (602) T ss_dssp HHHHHHHTTCCEECCCBCCCCSCTTSTTG--GGSSCSSHHHHHHGGG-HHHHHH T ss_pred HHHHHHHHCCCEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHH-CCCCCH T ss_conf 99999980997763354345678876742--4566788799999973-267412 No 7 >1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* 3ag3_K* ... Probab=52.56 E-value=4.3 Score=21.07 Aligned_cols=19 Identities=32% Similarity=0.188 Sum_probs=15.0 Q ss_pred HHHHHCCCCCCCCEEEEEC Q ss_conf 8999618961221145004 Q gi|254781070|r 3 KNLVTSGINVNFSPVLDLL 21 (58) Q Consensus 3 ~~L~~~Gin~n~aPVlDi~ 21 (58) ..+-++||-|||+||=-|. T Consensus 31 y~~TQ~gIewnlSpVGrVt 49 (56) T 1v54_K 31 YMATQIGIEWNPSPVGRVT 49 (56) T ss_dssp HHHHHSCCCCCCCCTTTCC T ss_pred EEEEEEEEEECCCCCCCCC T ss_conf 0246434566467644337 No 8 >2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A Probab=44.22 E-value=20 Score=17.28 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=37.8 Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 899961896122114500468878714136775888899999999999999867 Q gi|254781070|r 3 KNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58) Q Consensus 3 ~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58) +.++..+....+.|+||+-.... . ...+.-..+++.+.+.+.+|++...+. T Consensus 347 ~~~~~~~~~~~~pv~lDvE~~~~--~-~~~~~~~~~~~~~~~~~~~f~~~v~~~ 397 (468) T 2ww5_A 347 ELIKKYNMNLSYPIYYDVENWEY--V-NKSKRAPSDTDTWVKIINKYMDTMKQA 397 (468) T ss_dssp HHHHHTTCCCSSCEEEECCCCBC--T-TSSCBCCCCHHHHHHHHHHHHHHHHHT T ss_pred HHHHHCCCCCCCCEEEEEECCCC--C-CCCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 86121167887876999862777--7-875457789999999999999999973 No 9 >2pb9_A Phosphomethylpyrimidine kinase; phosphate, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.70A {Pyrococcus furiosus} SCOP: c.74.1.2 Probab=34.06 E-value=16 Score=17.73 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.9 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 87141367758888999999999999998678 Q gi|254781070|r 26 TFIAQKRSIFSRIPAKAEESAQLFSRTYIKNP 57 (58) Q Consensus 26 ~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n~ 57 (58) -|++ |=||.||..|++-....+++|+.|- T Consensus 166 EP~i---~vfg~~p~evv~kv~~l~~~~~~~~ 194 (195) T 2pb9_A 166 EPMI---LVFGRNPREVLEKIKMLIEGHHHHH 194 (195) T ss_dssp CCEE---EEEESSHHHHHHHHHHTC------- T ss_pred CCEE---EEECCCHHHHHHHHHHHHHHHCCCC T ss_conf 8889---9989999999999999997541247 No 10 >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Probab=24.48 E-value=17 Score=17.72 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=18.7 Q ss_pred HHHHHHCCCC--CCCCEEEEECCCCCCCEEC Q ss_conf 6899961896--1221145004688787141 Q gi|254781070|r 2 AKNLVTSGIN--VNFSPVLDLLYGPETFIAQ 30 (58) Q Consensus 2 A~~L~~~Gin--~n~aPVlDi~~~~~~~i~~ 30 (58) |..|.+.||. |||||+. +.. |++.+.. T Consensus 165 ad~Lv~~GIk~IlNFap~~-L~v-P~~V~V~ 193 (212) T 3keo_A 165 ADILVKAGIKGILSFSPVH-LTL-PKDIIVQ 193 (212) T ss_dssp HHHHHHHTCCEEEECSSSC-CCC-CTTSEEE T ss_pred HHHHHHHCCEEEEECCCCC-CCC-CCCCEEE T ss_conf 9999982997999868854-579-8996899 No 11 >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Probab=22.11 E-value=48 Score=15.10 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=34.1 Q ss_pred HHHHHCCCC-CCCCEEEEEC---------------CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 899961896-1221145004---------------68878714136775888899999999999999867 Q gi|254781070|r 3 KNLVTSGIN-VNFSPVLDLL---------------YGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58) Q Consensus 3 ~~L~~~Gin-~n~aPVlDi~---------------~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58) .-|+.+||| +=|.||.+-. +++.+.-. .+.+||.+|..-.+==+.+|+..+++ T Consensus 186 dYLk~LGvtaI~L~Pi~e~~~~~~~~~~~~~~~wGYd~~~y~a-~d~~yGt~p~~~~~dfk~LV~~aH~~ 254 (657) T 2wsk_A 186 NYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFA-LHPAYACSPETALDEFRDAIKALHKA 254 (657) T ss_dssp HHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEE-ECGGGCSSGGGHHHHHHHHHHHHHHT T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 8999748988997896306887543456776777837653535-67322557775499999999999855 Done!