Query gi|254781070|ref|YP_003065483.1| hypothetical protein CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs 111 out of 1149
Neff 5.7
Searched_HMMs 13730
Date Wed Jun 1 11:13:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781070.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tr9a_ c.1.8.7 (A:) Beta-hexo 99.5 1.1E-14 7.8E-19 102.6 4.8 53 1-56 102-154 (330)
2 d1x38a1 c.1.8.7 (A:1-388) Beta 98.9 3.2E-10 2.3E-14 77.2 3.5 51 1-54 131-181 (388)
3 d1v54k_ f.23.5.1 (K:) Mitochon 55.1 2.1 0.00015 21.4 1.3 19 3-21 26-44 (49)
4 d2csba3 a.60.2.4 (A:410-464) T 18.9 12 0.0009 17.1 0.2 16 33-49 20-35 (55)
5 d1ofcx1 a.4.1.3 (X:799-850) SA 8.6 67 0.0049 12.9 2.6 22 33-54 27-49 (52)
6 d2odgc1 a.140.1.1 (C:2-47) Inn 7.6 52 0.0038 13.5 0.5 19 1-21 11-29 (46)
7 d1r89a2 d.218.1.7 (A:1-142) tR 7.4 35 0.0026 14.5 -0.4 26 8-34 105-130 (142)
8 d1nkua_ a.96.1.4 (A:) 3-Methyl 7.4 77 0.0056 12.6 1.4 24 35-58 61-84 (187)
9 d1u7ka_ a.73.1.1 (A:) AKV caps 7.3 77 0.0056 12.6 2.6 22 33-54 28-49 (131)
10 d1umdb2 c.48.1.2 (B:188-324) B 7.3 77 0.0056 12.6 2.1 49 2-51 87-136 (137)
No 1
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=99.48 E-value=1.1e-14 Score=102.59 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=47.2
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
+|+||+++|||||||||+|+..++ .+++ +||||+||+.|++++.+|++|++++
T Consensus 102 ~~~el~~~Gin~~~aPv~Dv~~~~--~~i~-~rsfg~Dp~~v~~~a~a~i~G~q~~ 154 (330)
T d1tr9a_ 102 MAAELIAHDVDLSFAPVLDMGFAC--KAIG-NRAFGEDVQTVLKHSSAFLRGMKAV 154 (330)
T ss_dssp HHHHHHTTTCCEECCCBCCCCSCS--TTTG-GGSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHCCCCCCC--CHHH-HCCCCCCHHHHHHHHHHEEECCCCC
T ss_conf 889999838884400001355442--0454-3235432018777543415460233
No 2
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=98.90 E-value=3.2e-10 Score=77.17 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=44.4
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 968999618961221145004688787141367758888999999999999998
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYI 54 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~ 54 (58)
+|+|++++||||+||||+||..+|++..+ .|+||+||..+++++. ++.+++
T Consensus 131 ~g~E~ra~Gin~~~aPv~Dv~~~p~~gr~--~et~geDp~l~~~~~~-~v~~~~ 181 (388)
T d1x38a1 131 TALEVRATGIQYAFAPCIAVCRDPRWGRC--YESYSEDRRIVQSMTE-LIPGLQ 181 (388)
T ss_dssp HHHHHHHTTCCEECCCBCCCCSCTTSTTG--GGSSCSSHHHHHHGGG-HHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHH-HHHHHH
T ss_conf 65788744876336776353456444655--6676678899999886-536641
No 3
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=55.09 E-value=2.1 Score=21.44 Aligned_cols=19 Identities=32% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHCCCCCCCCEEEEEC
Q ss_conf 8999618961221145004
Q gi|254781070|r 3 KNLVTSGINVNFSPVLDLL 21 (58)
Q Consensus 3 ~~L~~~Gin~n~aPVlDi~ 21 (58)
..+-++||.|||+||=-|.
T Consensus 26 yv~TQ~gI~WnlSPVGrVt 44 (49)
T d1v54k_ 26 YMATQIGIEWNPSPVGRVT 44 (49)
T ss_dssp HHHHHSCCCCCCCCTTTCC
T ss_pred HEEEEEEEEECCCCCCCCC
T ss_conf 2035311236466544336
No 4
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=18.88 E-value=12 Score=17.09 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 77588889999999999
Q gi|254781070|r 33 SIFSRIPAKAEESAQLF 49 (58)
Q Consensus 33 Rsfg~dp~~V~~~a~af 49 (58)
|+|| +|+.|.+++..|
T Consensus 20 rafg-npervkqlaref 35 (55)
T d2csba3 20 RAFG-NPERVKQLAREF 35 (55)
T ss_dssp HHHS-SHHHHHHHHHTT
T ss_pred HHHC-CHHHHHHHHHHH
T ss_conf 9819-989999999998
No 5
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.57 E-value=67 Score=12.90 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.1
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 775-8888999999999999998
Q gi|254781070|r 33 SIF-SRIPAKAEESAQLFSRTYI 54 (58)
Q Consensus 33 Rsf-g~dp~~V~~~a~afi~~~~ 54 (58)
..+ |.+++.|.+|++.|-+-+.
T Consensus 27 ~e~~~Kt~eEV~~Y~~vFw~ry~ 49 (52)
T d1ofcx1 27 KDVEGKTPEEVIEYNAVFWERCT 49 (52)
T ss_dssp TSSTTCCHHHHHHHHHHHHHHGG
T ss_pred HHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 98669999999999999999877
No 6
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.56 E-value=52 Score=13.52 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=12.6
Q ss_pred CHHHHHHCCCCCCCCEEEEEC
Q ss_conf 968999618961221145004
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLL 21 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~ 21 (58)
|.+.|+..||. -+||+|..
T Consensus 11 l~~lL~~y~I~--HGPvVdst 29 (46)
T d2odgc1 11 LTTLLRRYNIP--HGPVVGST 29 (46)
T ss_dssp HHHHHHHTTCC--CCCCCHHH
T ss_pred HHHHHHHHCCC--CCCCCCCH
T ss_conf 99999992899--88800613
No 7
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.43 E-value=35 Score=14.49 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=16.9
Q ss_pred CCCCCCCCEEEEECCCCCCCEECCCCC
Q ss_conf 189612211450046887871413677
Q gi|254781070|r 8 SGINVNFSPVLDLLYGPETFIAQKRSI 34 (58)
Q Consensus 8 ~Gin~n~aPVlDi~~~~~~~i~~~~Rs 34 (58)
-|+.+++.|+.++..+.+ .+...|||
T Consensus 105 ~g~~vDvVP~~~v~~~~~-~~s~vDrt 130 (142)
T d1r89a2 105 KGVEVDVVPCYKLKEPKN-IKSAVDRT 130 (142)
T ss_dssp TTEEEEEEEEECCSSSSC-CCSHHHHH
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCCCC
T ss_conf 776999997777478121-23224588
No 8
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=7.37 E-value=77 Score=12.59 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 588889999999999999986789
Q gi|254781070|r 35 FSRIPAKAEESAQLFSRTYIKNPK 58 (58)
Q Consensus 35 fg~dp~~V~~~a~afi~~~~~n~~ 58 (58)
.|-||+.|+.+...-++....||.
T Consensus 61 ~~Fd~~~vA~~~e~~ie~Ll~d~~ 84 (187)
T d1nkua_ 61 HQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_dssp TTTCHHHHHTCCHHHHHHHHTCCS
T ss_pred HCCCHHHHHCCCHHHHHHHHCCCC
T ss_conf 289989997399999998745577
No 9
>d1u7ka_ a.73.1.1 (A:) AKV capsid {AKV murine leukemia virus [TaxId: 11791]}
Probab=7.33 E-value=77 Score=12.58 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7758888999999999999998
Q gi|254781070|r 33 SIFSRIPAKAEESAQLFSRTYI 54 (58)
Q Consensus 33 Rsfg~dp~~V~~~a~afi~~~~ 54 (58)
=+|++||...+..-..+...|.
T Consensus 28 p~fse~P~~~i~~~~~i~~th~ 49 (131)
T d1u7ka_ 28 PSFSEDPGKLTALIESVLTTHQ 49 (131)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHCHHHHHHHHHHHHHCCC
T ss_conf 7510397999999999996149
No 10
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=7.28 E-value=77 Score=12.56 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=29.3
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCC-CEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6899961896122114500468878-7141367758888999999999999
Q gi|254781070|r 2 AKNLVTSGINVNFSPVLDLLYGPET-FIAQKRSIFSRIPAKAEESAQLFSR 51 (58)
Q Consensus 2 A~~L~~~Gin~n~aPVlDi~~~~~~-~i~~~~Rsfg~dp~~V~~~a~afi~ 51 (58)
+..+..-+++...+|+.-+...... |-. ..+.|+-+++.+.+-.+..++
T Consensus 87 ~~~l~e~~~~~~~~~i~~~~~~d~~~p~~-~~~~~~l~~~~I~~~i~~~l~ 136 (137)
T d1umdb2 87 AATIAEDLLDMLLAPPIRVTGFDTPYPYA-QDKLYLPTVTRILNAAKRALD 136 (137)
T ss_dssp HHHHHHHHGGGCSSCCEEEEECSSCCCST-THHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCC-HHHHHCCCHHHHHHHHHHHHC
T ss_conf 99999860550599808975298899946-598849099999999999857
Done!