RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781070|ref|YP_003065483.1| hypothetical protein
CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
         (58 letters)



>gnl|CDD|31661 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate
           transport and metabolism].
          Length = 397

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSR 51
           +AK L   GIN++F+PVLD+   P      +RS F   P      A  F +
Sbjct: 105 IAKELRALGINLDFAPVLDVARDPRWGRIGERS-FGEDPELVALLAAAFIK 154


>gnl|CDD|144510 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal
          domain. 
          Length = 225

 Score = 24.9 bits (55), Expect = 4.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 1  MAKNLVTSGINVNFSPVLDL 20
          + +     GI+V  +PV+DL
Sbjct: 54 IGEEARAKGIDVILAPVVDL 73


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 643,889
Number of extensions: 22880
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 58
Length of database: 6,263,737
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,615,467
Effective search space: 157233076
Effective search space used: 157233076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)