RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781070|ref|YP_003065483.1| hypothetical protein
CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
         (58 letters)



>gnl|CDD|180024 PRK05337, PRK05337, beta-hexosaminidase; Provisional.
          Length = 337

 Score = 29.7 bits (68), Expect = 0.17
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 1   MAKNLVTSGINVNFSPVLDL 20
           MA  L   GI+++F+PVLDL
Sbjct: 106 MAAELRACGIDLSFAPVLDL 125


>gnl|CDD|148509 pfam06934, CTI, Fatty acid cis/trans isomerase (CTI).  This family
           consists of several fatty acid cis/trans isomerase
           proteins which appear to be found exclusively in
           bacteria of the orders Vibrionales and Pseudomonadales.
           Cis/trans isomerase (CTI) catalyses the cis-trans
           isomerisation of esterified fatty acids in
           phospholipids, mainly cis-oleic acid (C(16:1,9)) and
           cis-vaccenic acid (C(18:1,11)), in response to solvents.
           The CTI protein has been shown to be involved in solvent
           resistance in Pseudomonas putida.
          Length = 688

 Score = 28.3 bits (64), Expect = 0.50
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 14/45 (31%)

Query: 22  YGPET----FIAQKRSIFSRIPAKAE-----ESAQLFSRTYIKNP 57
           Y PE     F       F  IPA+A      ++AQ    T+IK P
Sbjct: 248 YEPEVAANPFKT-----FEAIPARARYQFMLDNAQYTIMTFIKGP 287


>gnl|CDD|179276 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 475

 Score = 26.0 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 27  FIAQKRSIFSRIPAKAEESAQLFSRTY 53
           FI Q R I  + P K E    LFS T+
Sbjct: 254 FIPQVRQIIRQTPRKEERQTLLFSATF 280


>gnl|CDD|179671 PRK03906, PRK03906, mannonate dehydratase; Provisional.
          Length = 385

 Score = 25.2 bits (56), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)

Query: 3   KNLVTSGINV---NFSPVLD 19
           +NL  +GI V   NF PV D
Sbjct: 90  RNLAAAGIKVVCYNFMPVFD 109


>gnl|CDD|185215 PRK15315, PRK15315, outer membrane protein RatA; Provisional.
          Length = 1865

 Score = 24.6 bits (53), Expect = 6.6
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 6    VTSGINVNF----SPVLDL--LYG--PETFIAQKRSIFSRIPAKAEESAQLFSRTY 53
             TS + V F    SP  D   +YG  PETF A   + F R     E S++  + TY
Sbjct: 1417 ATSSLPVVFTVLTSPDSDKANMYGHMPETFTASNGAEFKRPLVYGEPSSEAHTDTY 1472


>gnl|CDD|179884 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 423

 Score = 24.2 bits (53), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 27  FIAQKRSIFSRIPAKAEESAQLFSRT 52
           FI   R +F R+P   +    LFS T
Sbjct: 174 FIKDIRWLFRRMPPANQRLNMLFSAT 199


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 904,569
Number of extensions: 39412
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 10
Length of query: 58
Length of database: 5,994,473
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,346,233
Effective search space: 149694524
Effective search space used: 149694524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)