RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781070|ref|YP_003065483.1| hypothetical protein
CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
         (58 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 30.5 bits (68), Expect = 0.090
 Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 9/67 (13%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEE---SAQL------FSR 51
             + L    I V      D +   +    Q   I   +P   +    SA        ++ 
Sbjct: 251 KRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAE 310

Query: 52  TYIKNPK 58
            +  N  
Sbjct: 311 RFAPNAN 317


>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural
          genomics, protein structure initiative, PSI, structural
          genomics, unknown function; 2.01A {Vibrio cholerae}
          (A:)
          Length = 126

 Score = 25.1 bits (55), Expect = 4.0
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 6  VTSGINVNFSPVLDLLYGPE-TFIAQKRSIFS---RIPAKAEESAQLFSRTYI 54
              I +         Y  E +    +R +F+    I   + ++ QL SR ++
Sbjct: 4  SLPCIKIQVQTR----YIEEQSNPEYQRFVFAYLITIKNLSSQTVQLXSRRWL 52


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 370,407
Number of extensions: 10798
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 58
Length of database: 4,956,049
Length adjustment: 27
Effective length of query: 31
Effective length of database: 4,043,314
Effective search space: 125342734
Effective search space used: 125342734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)