RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781070|ref|YP_003065483.1| hypothetical protein
CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
         (58 letters)



>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet,
           hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A
          Length = 822

 Score = 33.4 bits (75), Expect = 0.012
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGP 24
            AK +  +GI  +F+P + ++   
Sbjct: 146 TAKEVAATGIEWSFAPTVAVVRDD 169


>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III
           fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB:
           2x40_A* 2x42_A*
          Length = 721

 Score = 32.4 bits (73), Expect = 0.029
 Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 6/33 (18%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGP------ETF 27
           M + +   G++V  +P +++   P      E +
Sbjct: 103 MGEEVREYGVDVLLAPAMNIHRNPLCGRNFEYY 135


>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
           barrel, glycosidase, hydrolase, membrane, palmitate;
           HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
          Length = 642

 Score = 31.8 bits (71), Expect = 0.036
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIP 39
           + K L   GIN +FSPV+D+   P+  +   RS FS   
Sbjct: 160 IGKELSALGINTDFSPVVDINNNPDNPVIGVRS-FSSNR 197


>2wt3_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III
           fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB:
           2wt6_A 2x40_A 2x41_A* 2x42_A* 2wt5_A*
          Length = 721

 Score = 30.9 bits (69), Expect = 0.069
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGP 24
           M + +   G++V  +P +++   P
Sbjct: 103 MGEEVREYGVDVLLAPAMNIHRNP 126


>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
           PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
           3ac0_A*
          Length = 845

 Score = 30.4 bits (68), Expect = 0.11
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 6/33 (18%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGP------ETF 27
           MAK  +     V   P  ++  GP      E+F
Sbjct: 86  MAKESIAKNAAVILGPTTNMQRGPLGGRGFESF 118


>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure
          initiative, northeast structural genomics consortium,
          NESG; 2.40A {Shewanella oneidensis mr-1} SCOP: b.1.23.1
          Length = 134

 Score = 24.8 bits (54), Expect = 5.4
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 6  VTSGINVNFSPVLDLLYGPE-TFIAQKRSIFS---RIPAKAEESAQLFSRTYI 54
          + + I V         Y  + +    ++ +FS    I    E++A+L +R +I
Sbjct: 4  LDNSIRVEVKTE----YIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWI 52


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 434,460
Number of extensions: 13218
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 6
Length of query: 58
Length of database: 5,693,230
Length adjustment: 30
Effective length of query: 28
Effective length of database: 4,965,910
Effective search space: 139045480
Effective search space used: 139045480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)