Query gi|254781071|ref|YP_003065484.1| hypothetical protein CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 71 No_of_seqs 117 out of 1614 Neff 5.6 Searched_HMMs 13730 Date Wed Jun 1 11:17:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781071.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1x38a1 c.1.8.7 (A:1-388) Beta 99.5 2.3E-14 1.6E-18 98.7 5.6 67 2-70 275-357 (388) 2 d1tr9a_ c.1.8.7 (A:) Beta-hexo 98.2 2.8E-07 2E-11 59.5 3.5 66 2-69 233-329 (330) 3 d1d2da_ a.16.1.3 (A:) Multifun 70.3 3.3 0.00024 20.4 4.6 31 41-71 12-42 (56) 4 d1r6ta1 a.16.1.3 (A:7-60) N-te 66.3 4.1 0.0003 19.8 4.4 32 40-71 15-46 (54) 5 d2p12a1 b.175.1.1 (A:8-172) Hy 53.6 7.2 0.00052 18.5 3.8 33 37-69 112-144 (165) 6 d1fyja_ a.16.1.3 (A:) Multifun 53.3 8.2 0.0006 18.2 4.1 31 40-70 14-44 (57) 7 d2c1xa1 c.87.1.10 (A:7-456) UD 21.6 29 0.0021 15.2 3.7 54 12-65 341-406 (450) 8 d1qapa1 c.1.17.1 (A:130-296) Q 20.5 27 0.002 15.3 2.3 42 16-57 87-139 (167) 9 d1clia1 d.79.4.1 (A:5-170) Ami 15.6 29 0.0021 15.2 1.5 22 26-47 7-28 (166) 10 d1ea0a2 c.1.4.1 (A:423-1193) A 14.4 44 0.0032 14.2 2.5 56 9-64 221-276 (771) No 1 >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Probab=99.47 E-value=2.3e-14 Score=98.74 Aligned_cols=67 Identities=30% Similarity=0.341 Sum_probs=57.4 Q ss_pred CCCCCHHHHHHHCCCCH------------HHHHHHHHCCCHHHHHH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 75712037755412349------------99999997241245425----549999999997999989999999999999 Q gi|254781071|r 2 RWAFKALLALIACKWNL------------SRIIAVYNAGADQQDPA----DVIELIYAHVKSGEIKPSRIESAYQRIIYL 65 (71) Q Consensus 2 ~W~f~g~~~~v~~~w~~------------~~~~~a~nAG~Dle~p~----~~~~~i~~aV~~G~i~~~~id~sv~RIL~l 65 (71) +|||+|+| |+||++. ...+.+++||.|+.+.+ .+++.|.++|++|+|++++||+||+|||++ T Consensus 275 ~~gF~G~V--vSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~ 352 (388) T d1x38a1 275 TLKFKGFV--ISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRV 352 (388) T ss_dssp TSCCCSEE--ECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH T ss_pred CCCCCCEE--ECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 05997524--2422102331235677578999999851788134785389999999999985998999999999999999 Q ss_pred HHHHC Q ss_conf 99736 Q gi|254781071|r 66 KNKMK 70 (71) Q Consensus 66 k~kl~ 70 (71) |+++. T Consensus 353 k~~lG 357 (388) T d1x38a1 353 KFTMG 357 (388) T ss_dssp HHHTT T ss_pred HHHHC T ss_conf 99948 No 2 >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Probab=98.25 E-value=2.8e-07 Score=59.54 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=45.8 Q ss_pred CCCCCHHHHHHHCCCCH----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---------------CCC----- Q ss_conf 75712037755412349----------999999972412454255499999999979---------------999----- Q gi|254781071|r 2 RWAFKALLALIACKWNL----------SRIIAVYNAGADQQDPADVIELIYAHVKSG---------------EIK----- 51 (71) Q Consensus 2 ~W~f~g~~~~v~~~w~~----------~~~~~a~nAG~Dle~p~~~~~~i~~aV~~G---------------~i~----- 51 (71) +|||+|+| |+||.+. ++++.|++||.|+.+.++..+...+++.+. ++. T Consensus 233 ~lgF~G~I--iSD~l~m~~~~~~~~~~e~~~~al~AG~Dl~l~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (330) T d1tr9a_ 233 ELGFKGIV--FSDDLSMEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELK 310 (330) T ss_dssp CTCCCSEE--EEEETTCCTTCCSCSHHHHHHHHHHHTCSEEECCSCHHHHHHHHHHSCCCCCGGGGGGSCSCCCCHHHHT T ss_pred HCCCCCEE--ECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 26997179--8257651201105998999999998599789878976999999982410010025678776554099999 Q ss_pred -HHHHHHHHHHHHHHHHHH Q ss_conf -899999999999999973 Q gi|254781071|r 52 -PSRIESAYQRIIYLKNKM 69 (71) Q Consensus 52 -~~~id~sv~RIL~lk~kl 69 (71) .+++.++..++.+|+.|+ T Consensus 311 ~~~r~~~~~~~~~~l~e~~ 329 (330) T d1tr9a_ 311 RLERWQQASANMQRLIEQF 329 (330) T ss_dssp TSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999852 No 3 >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Probab=70.26 E-value=3.3 Score=20.38 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.2 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999997999989999999999999997369 Q gi|254781071|r 41 IYAHVKSGEIKPSRIESAYQRIIYLKNKMKT 71 (71) Q Consensus 41 i~~aV~~G~i~~~~id~sv~RIL~lk~kl~s 71 (71) ++...++..-+.+.|+.+|...|.||.++++ T Consensus 12 ~VR~LKa~ka~K~~i~~aV~~LL~LK~~yk~ 42 (56) T d1d2da_ 12 VVRKLKAEKAPKAKVTEAVECLLSLKAEYKE 42 (56) T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHCS T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999871589989999999999999999999 No 4 >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Probab=66.34 E-value=4.1 Score=19.85 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.8 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999997999989999999999999997369 Q gi|254781071|r 40 LIYAHVKSGEIKPSRIESAYQRIIYLKNKMKT 71 (71) Q Consensus 40 ~i~~aV~~G~i~~~~id~sv~RIL~lk~kl~s 71 (71) .++..++...-+.+.||.+|...|.||..+++ T Consensus 15 d~VR~LKa~ka~K~~id~aV~~LL~LK~~yk~ 46 (54) T d1r6ta1 15 ELVRSLKAGNASKDEIDSAVKMLVSLKMSYKA 46 (54) T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999881589889999999999999999998 No 5 >d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=53.64 E-value=7.2 Score=18.53 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.7 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 499999999979999899999999999999973 Q gi|254781071|r 37 VIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69 (71) Q Consensus 37 ~~~~i~~aV~~G~i~~~~id~sv~RIL~lk~kl 69 (71) ..+.+.+|+++|.||++..+.+.+....+...+ T Consensus 112 D~DEL~~A~~~GlIs~e~ae~Al~ta~~~ve~i 144 (165) T d2p12a1 112 DVDELMEAHTTGLLDTATAEQAILTATTAIDGI 144 (165) T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 499999999869989999999999999999999 No 6 >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Probab=53.33 E-value=8.2 Score=18.19 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999799998999999999999999736 Q gi|254781071|r 40 LIYAHVKSGEIKPSRIESAYQRIIYLKNKMK 70 (71) Q Consensus 40 ~i~~aV~~G~i~~~~id~sv~RIL~lk~kl~ 70 (71) .++..++...-+.+.|+.+|...|.||.+++ T Consensus 14 d~VR~LK~~ka~k~~i~~aV~~LL~LK~~yk 44 (57) T d1fyja_ 14 DVVRELKAKKAPKEDVDAAVKQLLSLKAEYK 44 (57) T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999988048998999999999999999999 No 7 >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} Probab=21.58 E-value=29 Score=15.15 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=38.3 Q ss_pred HHCCCCHHHHHHHHHCCCHHHHHHHH------HHHHHHH------HHCCCCCHHHHHHHHHHHHHH Q ss_conf 54123499999999724124542554------9999999------997999989999999999999 Q gi|254781071|r 12 IACKWNLSRIIAVYNAGADQQDPADV------IELIYAH------VKSGEIKPSRIESAYQRIIYL 65 (71) Q Consensus 12 v~~~w~~~~~~~a~nAG~Dle~p~~~------~~~i~~a------V~~G~i~~~~id~sv~RIL~l 65 (71) +...-|..++.+|+.+|+=|..-+-. ...+.+. +..+.++.++|.++++++|.- T Consensus 341 fItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d 406 (450) T d2c1xa1 341 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ 406 (450) T ss_dssp EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHS T ss_pred EECCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCC T ss_conf 970688307999998599989635400008999999997090898038983899999999999619 No 8 >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=20.53 E-value=27 Score=15.30 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=27.6 Q ss_pred CCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHH----------CCCCCHHHHHH Q ss_conf 3499999999724124542554-999999999----------79999899999 Q gi|254781071|r 16 WNLSRIIAVYNAGADQQDPADV-IELIYAHVK----------SGEIKPSRIES 57 (71) Q Consensus 16 w~~~~~~~a~nAG~Dle~p~~~-~~~i~~aV~----------~G~i~~~~id~ 57 (71) =+.++..+++++|.|+.|-.++ ++.+.++|+ +|-|+.+.|.+ T Consensus 87 ~~~~~~~~a~~~g~diImLDN~~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~ 139 (167) T d1qapa1 87 ENLDELDDALKAGADIIMLDNFNTDQMREAVKRVNGQARLEVSGNVTAETLRE 139 (167) T ss_dssp SSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHTTCTTCCEEECCCSCHHHHHH T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHH T ss_conf 86788898874588599965888899999998607945999857988899999 No 9 >d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]} Probab=15.62 E-value=29 Score=15.15 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=15.0 Q ss_pred HCCCHHHHHHHHHHHHHHHHHC Q ss_conf 7241245425549999999997 Q gi|254781071|r 26 NAGADQQDPADVIELIYAHVKS 47 (71) Q Consensus 26 nAG~Dle~p~~~~~~i~~aV~~ 47 (71) +||+|++-...+.+.|.+.+++ T Consensus 7 ~AGVDI~~~~~~v~~ik~~~~~ 28 (166) T d1clia1 7 DAGVDIDAGNALVGRIKGVVKK 28 (166) T ss_dssp SSCCCTTHHHHHHHHTHHHHHT T ss_pred HHCCCHHHHHHHHHHHHHHHHH T ss_conf 8792999999999999999985 No 10 >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Probab=14.38 E-value=44 Score=14.18 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=42.5 Q ss_pred HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 77554123499999999724124542554999999999799998999999999999 Q gi|254781071|r 9 LALIACKWNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIY 64 (71) Q Consensus 9 ~~~v~~~w~~~~~~~a~nAG~Dle~p~~~~~~i~~aV~~G~i~~~~id~sv~RIL~ 64 (71) |.-..+-+..|++.-.+-=|.|-..|.-.++.+.+..+++.......++++.+-.+ T Consensus 221 IveSGeare~Hh~A~LiGyGA~AV~PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~k 276 (771) T d1ea0a2 221 NVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKK 276 (771) T ss_dssp EEECSSCCSHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTTTTCCHHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 77500355145504101025222483899999999875441357889999999999 Done!