Query         gi|254781071|ref|YP_003065484.1| hypothetical protein CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs    117 out of 1614
Neff          5.6 
Searched_HMMs 13730
Date          Wed Jun  1 11:17:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781071.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1x38a1 c.1.8.7 (A:1-388) Beta  99.5 2.3E-14 1.6E-18   98.7   5.6   67    2-70    275-357 (388)
  2 d1tr9a_ c.1.8.7 (A:) Beta-hexo  98.2 2.8E-07   2E-11   59.5   3.5   66    2-69    233-329 (330)
  3 d1d2da_ a.16.1.3 (A:) Multifun  70.3     3.3 0.00024   20.4   4.6   31   41-71     12-42  (56)
  4 d1r6ta1 a.16.1.3 (A:7-60) N-te  66.3     4.1  0.0003   19.8   4.4   32   40-71     15-46  (54)
  5 d2p12a1 b.175.1.1 (A:8-172) Hy  53.6     7.2 0.00052   18.5   3.8   33   37-69    112-144 (165)
  6 d1fyja_ a.16.1.3 (A:) Multifun  53.3     8.2  0.0006   18.2   4.1   31   40-70     14-44  (57)
  7 d2c1xa1 c.87.1.10 (A:7-456) UD  21.6      29  0.0021   15.2   3.7   54   12-65    341-406 (450)
  8 d1qapa1 c.1.17.1 (A:130-296) Q  20.5      27   0.002   15.3   2.3   42   16-57     87-139 (167)
  9 d1clia1 d.79.4.1 (A:5-170) Ami  15.6      29  0.0021   15.2   1.5   22   26-47      7-28  (166)
 10 d1ea0a2 c.1.4.1 (A:423-1193) A  14.4      44  0.0032   14.2   2.5   56    9-64    221-276 (771)

No 1  
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=99.47  E-value=2.3e-14  Score=98.74  Aligned_cols=67  Identities=30%  Similarity=0.341  Sum_probs=57.4

Q ss_pred             CCCCCHHHHHHHCCCCH------------HHHHHHHHCCCHHHHHH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             75712037755412349------------99999997241245425----549999999997999989999999999999
Q gi|254781071|r    2 RWAFKALLALIACKWNL------------SRIIAVYNAGADQQDPA----DVIELIYAHVKSGEIKPSRIESAYQRIIYL   65 (71)
Q Consensus         2 ~W~f~g~~~~v~~~w~~------------~~~~~a~nAG~Dle~p~----~~~~~i~~aV~~G~i~~~~id~sv~RIL~l   65 (71)
                      +|||+|+|  |+||++.            ...+.+++||.|+.+.+    .+++.|.++|++|+|++++||+||+|||++
T Consensus       275 ~~gF~G~V--vSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~  352 (388)
T d1x38a1         275 TLKFKGFV--ISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRV  352 (388)
T ss_dssp             TSCCCSEE--ECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEE--ECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             05997524--2422102331235677578999999851788134785389999999999985998999999999999999


Q ss_pred             HHHHC
Q ss_conf             99736
Q gi|254781071|r   66 KNKMK   70 (71)
Q Consensus        66 k~kl~   70 (71)
                      |+++.
T Consensus       353 k~~lG  357 (388)
T d1x38a1         353 KFTMG  357 (388)
T ss_dssp             HHHTT
T ss_pred             HHHHC
T ss_conf             99948


No 2  
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=98.25  E-value=2.8e-07  Score=59.54  Aligned_cols=66  Identities=15%  Similarity=0.143  Sum_probs=45.8

Q ss_pred             CCCCCHHHHHHHCCCCH----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---------------CCC-----
Q ss_conf             75712037755412349----------999999972412454255499999999979---------------999-----
Q gi|254781071|r    2 RWAFKALLALIACKWNL----------SRIIAVYNAGADQQDPADVIELIYAHVKSG---------------EIK-----   51 (71)
Q Consensus         2 ~W~f~g~~~~v~~~w~~----------~~~~~a~nAG~Dle~p~~~~~~i~~aV~~G---------------~i~-----   51 (71)
                      +|||+|+|  |+||.+.          ++++.|++||.|+.+.++..+...+++.+.               ++.     
T Consensus       233 ~lgF~G~I--iSD~l~m~~~~~~~~~~e~~~~al~AG~Dl~l~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~l~  310 (330)
T d1tr9a_         233 ELGFKGIV--FSDDLSMEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELK  310 (330)
T ss_dssp             CTCCCSEE--EEEETTCCTTCCSCSHHHHHHHHHHHTCSEEECCSCHHHHHHHHHHSCCCCCGGGGGGSCSCCCCHHHHT
T ss_pred             HCCCCCEE--ECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             26997179--8257651201105998999999998599789878976999999982410010025678776554099999


Q ss_pred             -HHHHHHHHHHHHHHHHHH
Q ss_conf             -899999999999999973
Q gi|254781071|r   52 -PSRIESAYQRIIYLKNKM   69 (71)
Q Consensus        52 -~~~id~sv~RIL~lk~kl   69 (71)
                       .+++.++..++.+|+.|+
T Consensus       311 ~~~r~~~~~~~~~~l~e~~  329 (330)
T d1tr9a_         311 RLERWQQASANMQRLIEQF  329 (330)
T ss_dssp             TSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999852


No 3  
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=70.26  E-value=3.3  Score=20.38  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=26.2

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999997999989999999999999997369
Q gi|254781071|r   41 IYAHVKSGEIKPSRIESAYQRIIYLKNKMKT   71 (71)
Q Consensus        41 i~~aV~~G~i~~~~id~sv~RIL~lk~kl~s   71 (71)
                      ++...++..-+.+.|+.+|...|.||.++++
T Consensus        12 ~VR~LKa~ka~K~~i~~aV~~LL~LK~~yk~   42 (56)
T d1d2da_          12 VVRKLKAEKAPKAKVTEAVECLLSLKAEYKE   42 (56)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999871589989999999999999999999


No 4  
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.34  E-value=4.1  Score=19.85  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=27.8

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999997999989999999999999997369
Q gi|254781071|r   40 LIYAHVKSGEIKPSRIESAYQRIIYLKNKMKT   71 (71)
Q Consensus        40 ~i~~aV~~G~i~~~~id~sv~RIL~lk~kl~s   71 (71)
                      .++..++...-+.+.||.+|...|.||..+++
T Consensus        15 d~VR~LKa~ka~K~~id~aV~~LL~LK~~yk~   46 (54)
T d1r6ta1          15 ELVRSLKAGNASKDEIDSAVKMLVSLKMSYKA   46 (54)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999881589889999999999999999998


No 5  
>d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=53.64  E-value=7.2  Score=18.53  Aligned_cols=33  Identities=9%  Similarity=0.098  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             499999999979999899999999999999973
Q gi|254781071|r   37 VIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM   69 (71)
Q Consensus        37 ~~~~i~~aV~~G~i~~~~id~sv~RIL~lk~kl   69 (71)
                      ..+.+.+|+++|.||++..+.+.+....+...+
T Consensus       112 D~DEL~~A~~~GlIs~e~ae~Al~ta~~~ve~i  144 (165)
T d2p12a1         112 DVDELMEAHTTGLLDTATAEQAILTATTAIDGI  144 (165)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             499999999869989999999999999999999


No 6  
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.33  E-value=8.2  Score=18.19  Aligned_cols=31  Identities=16%  Similarity=0.301  Sum_probs=26.2

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999799998999999999999999736
Q gi|254781071|r   40 LIYAHVKSGEIKPSRIESAYQRIIYLKNKMK   70 (71)
Q Consensus        40 ~i~~aV~~G~i~~~~id~sv~RIL~lk~kl~   70 (71)
                      .++..++...-+.+.|+.+|...|.||.+++
T Consensus        14 d~VR~LK~~ka~k~~i~~aV~~LL~LK~~yk   44 (57)
T d1fyja_          14 DVVRELKAKKAPKEDVDAAVKQLLSLKAEYK   44 (57)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999988048998999999999999999999


No 7  
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}
Probab=21.58  E-value=29  Score=15.15  Aligned_cols=54  Identities=9%  Similarity=0.102  Sum_probs=38.3

Q ss_pred             HHCCCCHHHHHHHHHCCCHHHHHHHH------HHHHHHH------HHCCCCCHHHHHHHHHHHHHH
Q ss_conf             54123499999999724124542554------9999999------997999989999999999999
Q gi|254781071|r   12 IACKWNLSRIIAVYNAGADQQDPADV------IELIYAH------VKSGEIKPSRIESAYQRIIYL   65 (71)
Q Consensus        12 v~~~w~~~~~~~a~nAG~Dle~p~~~------~~~i~~a------V~~G~i~~~~id~sv~RIL~l   65 (71)
                      +...-|..++.+|+.+|+=|..-+-.      ...+.+.      +..+.++.++|.++++++|.-
T Consensus       341 fItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d  406 (450)
T d2c1xa1         341 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ  406 (450)
T ss_dssp             EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             970688307999998599989635400008999999997090898038983899999999999619


No 8  
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.53  E-value=27  Score=15.30  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHH----------CCCCCHHHHHH
Q ss_conf             3499999999724124542554-999999999----------79999899999
Q gi|254781071|r   16 WNLSRIIAVYNAGADQQDPADV-IELIYAHVK----------SGEIKPSRIES   57 (71)
Q Consensus        16 w~~~~~~~a~nAG~Dle~p~~~-~~~i~~aV~----------~G~i~~~~id~   57 (71)
                      =+.++..+++++|.|+.|-.++ ++.+.++|+          +|-|+.+.|.+
T Consensus        87 ~~~~~~~~a~~~g~diImLDN~~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~  139 (167)
T d1qapa1          87 ENLDELDDALKAGADIIMLDNFNTDQMREAVKRVNGQARLEVSGNVTAETLRE  139 (167)
T ss_dssp             SSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHTTCTTCCEEECCCSCHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf             86788898874588599965888899999998607945999857988899999


No 9  
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.62  E-value=29  Score=15.15  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=15.0

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             7241245425549999999997
Q gi|254781071|r   26 NAGADQQDPADVIELIYAHVKS   47 (71)
Q Consensus        26 nAG~Dle~p~~~~~~i~~aV~~   47 (71)
                      +||+|++-...+.+.|.+.+++
T Consensus         7 ~AGVDI~~~~~~v~~ik~~~~~   28 (166)
T d1clia1           7 DAGVDIDAGNALVGRIKGVVKK   28 (166)
T ss_dssp             SSCCCTTHHHHHHHHTHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHHHH
T ss_conf             8792999999999999999985


No 10 
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=14.38  E-value=44  Score=14.18  Aligned_cols=56  Identities=13%  Similarity=0.025  Sum_probs=42.5

Q ss_pred             HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             77554123499999999724124542554999999999799998999999999999
Q gi|254781071|r    9 LALIACKWNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIY   64 (71)
Q Consensus         9 ~~~v~~~w~~~~~~~a~nAG~Dle~p~~~~~~i~~aV~~G~i~~~~id~sv~RIL~   64 (71)
                      |.-..+-+..|++.-.+-=|.|-..|.-.++.+.+..+++.......++++.+-.+
T Consensus       221 IveSGeare~Hh~A~LiGyGA~AV~PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~k  276 (771)
T d1ea0a2         221 NVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKK  276 (771)
T ss_dssp             EEECSSCCSHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTTTTCCHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             77500355145504101025222483899999999875441357889999999999


Done!