BLAST/PSIBLAST alignment of GI: 254781071 and GI: 54294135 at iteration 2
>gi|54294135|ref|YP_126550.1| hypothetical protein lpl1199 [Legionella pneumophila str. Lens] Length = 382
>gi|53753967|emb|CAH15438.1| hypothetical protein lpl1199 [Legionella pneumophila str. Lens] Length = 382
 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 12/73 (16%)

Query: 9   LALIACKWNLSRIIAV-YNAGADQ-----------QDPADVIELIYAHVKSGEIKPSRIE 56
           +  I   + L   + +  NAGAD            QD  ++I++I   V+SGEI   RI 
Sbjct: 308 MKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRIN 367

Query: 57  SAYQRIIYLKNKM 69
            AYQRI+ +K   
Sbjct: 368 EAYQRIVKMKRSF 380