RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>gnl|CDD|37554 KOG2343, KOG2343, KOG2343, Glucose-repressible protein and related
           proteins [General function prediction only].
          Length = 689

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 50  IKPSRIESAYQRIIYLKNKMKT 71
           IK +  E  YQR + + +++K 
Sbjct: 298 IKITGRELEYQRCLAVASRVKF 319


>gnl|CDD|146628 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase
           (NAPRTase) family.  Nicotinate phosphoribosyltransferase
           (EC:2.4.2.11) is the rate limiting enzyme that catalyses
           the first reaction in the NAD salvage synthesis. This
           family also includes Pre-B cell enhancing factor that is
           a cytokine. This family is related to Quinolinate
           phosphoribosyltransferase pfam01729.
          Length = 243

 Score = 26.2 bits (58), Expect = 2.2
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 30  DQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIY 64
           D  DP +  E + AH  S  I   ++ +  +R+I+
Sbjct: 118 DSGDPVEWGEKLIAHFGSTNIDGYKVLN-TKRLIF 151


>gnl|CDD|29502 cd00801, INT_P4, Bacteriophage P4 integrase. P4-like integrases are
           found in temperate bacteriophages, integrative plasmids,
           pathogenicity and symbiosis islands, and other mobile
           genetic elements.  They share the same fold in their
           catalytic domain and the overall reaction mechanism with
           the superfamily of DNA breaking-rejoining enzymes. The
           P4 integrase mediates integrative and excisive
           site-specific recombination between two sites, called
           attachment sites, located on the phage genome and the
           bacterial chromosome. The phage attachment site is often
           found adjacent to the integrase gene, while the host
           attachment sites are typically situated near tRNA
           genes..
          Length = 357

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 34  PADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNK 68
           P DVIE   AHV  G     ++ +AY R  YL+ +
Sbjct: 319 PPDVIERQLAHVLGG-----KVRAAYNRADYLEER 348


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 831,641
Number of extensions: 32473
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 6
Length of query: 71
Length of database: 6,263,737
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,356,159
Effective search space: 155328611
Effective search space used: 155328611
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)