RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
          Length = 456

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 31  QQDPADVIELIYAHVKS 47
            QDP ++++LI AH+++
Sbjct: 333 DQDPQEILDLIEAHLQA 349


>gnl|CDD|170049 PRK09692, PRK09692, integrase; Provisional.
          Length = 413

 Score = 25.4 bits (55), Expect = 3.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 30  DQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNK 68
           +Q  P DVIE   AHV   E++      AY R  YL+ +
Sbjct: 349 EQGFPPDVIEAALAHVDKNEVR-----RAYNRSDYLEQR 382


>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase.  Cyanophycin
           synthesis is analogous to polyhydroxyalkanoic acid (PHA)
           biosynthesis, except that PHA polymers lack nitrogen and
           may be made under nitrogen-limiting conditions.
          Length = 864

 Score = 25.5 bits (56), Expect = 3.2
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 4   AFKALLALIACKWNLSRIIAVYNAGADQQDPADVIEL 40
           A +A+ A I   W   R I V     D++D  D++E 
Sbjct: 743 AIEAVGAAIR-NWPARRRIGVIGGPGDRRD-EDLVEQ 777


>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated.
          Length = 238

 Score = 25.2 bits (56), Expect = 4.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 27  AGADQQDPADVIELIYAHVKSGE 49
             A +  PADV   I   +++G+
Sbjct: 187 LDAPKASPADVARQILDALEAGD 209


>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
          Length = 612

 Score = 25.1 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 21  IIAVYNAGADQQDPADVIELIYAHV 45
           I+A   AG  + DPA  I+ I A V
Sbjct: 544 IVAERAAGTSRADPAPAIDAIRAAV 568


>gnl|CDD|128484 smart00187, INB, Integrin beta subunits (N-terminal portion of
           extracellular region).  Portion of beta integrins that
           lies N-terminal to their EGF-like repeats. Integrins are
           cell adhesion molecules that mediate cell-extracellular 
           matrix and cell-cell interactions. They contain both
           alpha and beta subunits. Beta integrins are proposed to
           have a von Willebrand factor type-A "insert" or "I"
           -like domain (although this remains to be confirmed).
          Length = 423

 Score = 24.6 bits (54), Expect = 5.5
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 14/48 (29%)

Query: 16  WNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRII 63
             LS +I   + G   +D ++V+EL              I+ AY +I 
Sbjct: 306 KELSALIPGSSVGVLSEDSSNVVEL--------------IKDAYNKIS 339


>gnl|CDD|150028 pfam09205, DUF1955, Domain of unknown function (DUF1955).  Members
           of this family are found in hypothetical proteins
           synthesized by the Archaeal organism Sulfolobus. Their
           exact function has not, as yet, been determined.
          Length = 160

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 31  QQDPADVIELIYAHVKSGEIKPS---RIESAYQRI 62
           QQ   D ++ I A + + EI P    +I +AY++I
Sbjct: 98  QQGKKDQLDKILAELFNEEIPPEILLKIANAYKKI 132


>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
            Provisional.
          Length = 2722

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 36   DVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKMKT 71
            D+IELI   +K    K   IE    + I L  KMKT
Sbjct: 1024 DIIELIDKLIKE---KGKEIEEKVDQYISLLEKMKT 1056


>gnl|CDD|152545 pfam12110, Nup96, Nuclear protein 96.  Nup96 (often known by the
           name of its yeast homolog Nup145C) is part of the Nup84
           heptameric complex in the nuclear pore complex. Nup96
           complexes with Sec13 in the middle of the heptamer. The
           function of the heptamer is to coat the curvature of the
           nuclear pore complex between the inner and outer nuclear
           membranes. Nup96 is predicted to be an alpha helical
           solenoid. The interaction between Nup96 and Sec13 is the
           point of curvature in the heptameric complex.
          Length = 287

 Score = 24.2 bits (53), Expect = 7.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 15  KWNLSRIIAVYNAGADQQDPADVIELIYA 43
            W+L ++++      D  D AD + L +A
Sbjct: 185 SWHLCQVLSAVGYRHDSDDIADQLTLSFA 213


>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal domain.
            Proteins of this family contain the C-terminal domain
           of citrate lyase ligase EC:6.2.1.22.
          Length = 182

 Score = 24.1 bits (53), Expect = 8.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 18  LSRIIAVYNAGADQQDPADVIELI 41
            S + A+YN    Q   +  IE++
Sbjct: 118 FSPVTAIYNQTMKQTLLSPAIEVV 141


>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
          Length = 267

 Score = 23.9 bits (52), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 33  DPADVIELIYAHVKSGEIKP 52
           DP DV+E+     K GE+  
Sbjct: 142 DPVDVVEIGERAAKIGEVLK 161


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,148,500
Number of extensions: 56426
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 24
Length of query: 71
Length of database: 5,994,473
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,086,937
Effective search space: 147521173
Effective search space used: 147521173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.0 bits)