RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781071|ref|YP_003065484.1| hypothetical protein CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62] (71 letters) >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} (A:1-365) Length = 365 Score = 35.8 bits (81), Expect = 0.002 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 20 RIIAVYNAGADQQ----DPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69 + A AG D I ++ HV G I SRI+ A RI+ +K M Sbjct: 303 SVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTM 356 >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419) Length = 419 Score = 30.1 bits (66), Expect = 0.12 Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 17 NLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69 +++ + A + ++Q A VI+ + VK+G+I +I ++ +RII LK K Sbjct: 344 DIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKR 396 >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A (A:) Length = 340 Score = 28.8 bits (63), Expect = 0.27 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%) Query: 20 RIIAVYNAGADQQDPA---DVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69 R AG D + + ++ E+ + Q+ Y + K Sbjct: 258 RSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELKR 310 >3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A (A:1-397) Length = 397 Score = 27.4 bits (59), Expect = 0.73 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 20 RIIAVYNAGADQ----QDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69 + NAG D + VK+G I SRI A +R + K + Sbjct: 308 QCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRW 361 >2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C* (A:) Length = 90 Score = 25.1 bits (55), Expect = 3.6 Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 6 KALLALIACKWNLSRIIAVYNAGADQQ--DP---ADVIELIYAHVKSGEIKPSRIESAYQ 60 +LAL+ + +S+ I + VIE G+ + + Sbjct: 26 AEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGR 85 Query: 61 RII 63 + Sbjct: 86 GRL 88 >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding protein; 1.95A {Thermus thermophilus HB8} (A:122-346) Length = 225 Score = 23.6 bits (50), Expect = 8.2 Identities = 5/27 (18%), Positives = 12/27 (44%) Query: 22 IAVYNAGADQQDPADVIELIYAHVKSG 48 + V + Q D + ++ H++ G Sbjct: 9 VEVGVSLGIQPSVEDTLRVVERHLEEG 35 >1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A (A:) Length = 172 Score = 23.7 bits (51), Expect = 9.7 Identities = 8/34 (23%), Positives = 15/34 (44%) Query: 29 ADQQDPADVIELIYAHVKSGEIKPSRIESAYQRI 62 D DP D + L+ V G + +R ++ + Sbjct: 60 GDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMV 93 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.134 0.400 Gapped Lambda K H 0.267 0.0591 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 525,645 Number of extensions: 17392 Number of successful extensions: 51 Number of sequences better than 10.0: 1 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 15 Length of query: 71 Length of database: 4,956,049 Length adjustment: 38 Effective length of query: 33 Effective length of database: 3,671,459 Effective search space: 121158147 Effective search space used: 121158147 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.3 bits)