RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold,
           ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL;
           1.70A {Hordeum vulgare} (A:1-365)
          Length = 365

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 20  RIIAVYNAGADQQ----DPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
            + A   AG D           I ++  HV  G I  SRI+ A  RI+ +K  M
Sbjct: 303 SVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTM 356


>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
           barrel, glycosidase, hydrolase, membrane, palmitate;
           HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
           (A:1-419)
          Length = 419

 Score = 30.1 bits (66), Expect = 0.12
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 17  NLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
           +++ + A   +  ++Q  A VI+ +   VK+G+I   +I ++ +RII LK K 
Sbjct: 344 DIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKR 396


>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A
           {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
           (A:)
          Length = 340

 Score = 28.8 bits (63), Expect = 0.27
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%)

Query: 20  RIIAVYNAGADQQDPA---DVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
           R      AG D        +    +  ++   E+  +      Q+  Y + K 
Sbjct: 258 RSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELKR 310


>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet,
           hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A
           (A:1-397)
          Length = 397

 Score = 27.4 bits (59), Expect = 0.73
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 20  RIIAVYNAGADQ----QDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
           +     NAG D     +            VK+G I  SRI  A +R +  K + 
Sbjct: 308 QCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRW 361


>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase,
          isomerase; 1.65A {Mycobacterium tuberculosis} PDB:
          2qbv_A 2w19_C 2w1a_C* (A:)
          Length = 90

 Score = 25.1 bits (55), Expect = 3.6
 Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 6  KALLALIACKWNLSRIIAVYNAGADQQ--DP---ADVIELIYAHVKSGEIKPSRIESAYQ 60
            +LAL+  +  +S+ I      +            VIE        G+     +    +
Sbjct: 26 AEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGR 85

Query: 61 RII 63
            +
Sbjct: 86 GRL 88


>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
          metal-binding, metal binding protein; 1.95A {Thermus
          thermophilus HB8} (A:122-346)
          Length = 225

 Score = 23.6 bits (50), Expect = 8.2
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 22 IAVYNAGADQQDPADVIELIYAHVKSG 48
          + V  +   Q    D + ++  H++ G
Sbjct: 9  VEVGVSLGIQPSVEDTLRVVERHLEEG 35


>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,,
          hydrolase; 1.30A {Mycobacterium tuberculosis} PDB:
          1wcf_A 2uxs_A (A:)
          Length = 172

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 29 ADQQDPADVIELIYAHVKSGEIKPSRIESAYQRI 62
           D  DP D + L+   V  G +  +R    ++ +
Sbjct: 60 GDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMV 93


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 525,645
Number of extensions: 17392
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 15
Length of query: 71
Length of database: 4,956,049
Length adjustment: 38
Effective length of query: 33
Effective length of database: 3,671,459
Effective search space: 121158147
Effective search space used: 121158147
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)