RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
           barrel, glycosidase, hydrolase, membrane, palmitate;
           HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
          Length = 642

 Score = 31.8 bits (71), Expect = 0.036
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 23  AVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
           A   +  ++Q  A VI+ +   VK+G+I   +I ++ +RII LK K 
Sbjct: 350 ASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKR 396


>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III
           fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB:
           2x40_A* 2x42_A*
          Length = 721

 Score = 31.2 bits (70), Expect = 0.056
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 33  DPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
           +  D IE I   +K G++    ++   + I+ +    
Sbjct: 271 ERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA 307


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.1 bits (59), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 21  IIAVYNAGADQQDPADVIELIYAHVKSG 48
           I+  +N G+ +QD   +IE IY   K+G
Sbjct: 534 IVVPFNQGS-KQDVEALIEFIYDTEKNG 560


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.9 bits (58), Expect = 1.3
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 13/38 (34%)

Query: 2  RWAFKALLALIACKWNLSRIIAVYNAGADQQDPADVIE 39
          + A K L A        S  + +Y   AD   PA  I+
Sbjct: 19 KQALKKLQA--------S--LKLY---ADDSAPALAIK 43


>2wt3_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III
           fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB:
           2wt6_A 2x40_A 2x41_A* 2x42_A* 2wt5_A*
          Length = 721

 Score = 25.5 bits (55), Expect = 2.8
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 14/79 (17%)

Query: 2   RWAFKALLALIACKW-NLSRIIAVYNAGADQQDPADVIEL----------IYAHVKSGEI 50
            W F+     +   W      +    AG D   P    ++          I   +K G++
Sbjct: 232 EWGFEGF---VMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKL 288

Query: 51  KPSRIESAYQRIIYLKNKM 69
               ++   + I+ +    
Sbjct: 289 SEEVLDECVRNILKVLVNA 307


>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
           hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
           cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
           2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
           2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
          Length = 286

 Score = 24.5 bits (53), Expect = 5.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 33  DPADVIELIYAHVKSGEIKPSRI 55
           DP DV+E+      +G++K  + 
Sbjct: 117 DPIDVLEIGETIAYTGQVKQVKA 139


>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal inorganic
           pyrophosphatase; ssgcid, inorganic phosphatase,
           hydrolase; 1.90A {Brucella melitensis biovar
           ABORTUS2308}
          Length = 197

 Score = 24.4 bits (53), Expect = 7.2
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 29  ADQQDPADVIELIYAHVKSGEIKPSRI 55
           ++  DP DV+      +  G +   R 
Sbjct: 85  SEDGDPIDVLVCNTRPLIPGCVINVRP 111


>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
           genomics center for infectious disease, ssgcid,
           hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
          Length = 199

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 29  ADQQDPADVIELIYAHVKSGEIKPSRI 55
           A   DP DV+ L    V  G +   R 
Sbjct: 85  AGDGDPVDVLVLARFPVMPGAVICVRP 111


>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate
          mutase domain; HET: TSA; 2.20A {Escherichia coli} SCOP:
          a.130.1.1
          Length = 109

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 6  KALLALIACKWNLSRIIAVYNAGADQQ--DP---ADVIELIYAHVKSGEIKPSRIESAYQ 60
          + LLAL+A +  L+  +      + +   D     D++E +    K+  +    I   +Q
Sbjct: 19 EKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQ 78

Query: 61 RII 63
           II
Sbjct: 79 LII 81


>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
           hydrolase, nucleotide-binding; HET: GDP; 2.25A
           {Salmonella typhimurium LT2}
          Length = 358

 Score = 23.9 bits (51), Expect = 8.5
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 43  AHVKSGEIKPSRIESAYQRII 63
             V++G I  +R E+ Y RI+
Sbjct: 322 EAVENGAIAETRFEN-YHRIL 341


>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex;
          alpha-beta, riken structural genomics/proteomics
          initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum}
          SCOP: d.107.1.2
          Length = 177

 Score = 23.9 bits (51), Expect = 8.7
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 15 KWNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIK 51
          KWN ++ +         +D  D    +   +   + K
Sbjct: 24 KWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60


>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
           genomics, BSGC structure funded by NIH, protein
           structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
           maritima} SCOP: b.40.4.5 c.37.1.8
          Length = 301

 Score = 23.9 bits (51), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 45  VKSGEIKPSRIESAYQRIIY-LKNKMK 70
           V++GEI  SR E+ Y ++ Y L  + K
Sbjct: 275 VENGEIAESRYEN-YVKMFYELLGRRK 300


>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster,
          Cys59Ser variant, electron transport; 1.05A {Aquifex
          aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
          Length = 110

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 33 DPADVIELIYAHVKSGEI 50
           P DV E++  H+K GE 
Sbjct: 78 KPEDVDEIVEKHLKGGEP 95


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 607,435
Number of extensions: 20905
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 22
Length of query: 71
Length of database: 5,693,230
Length adjustment: 41
Effective length of query: 30
Effective length of database: 4,699,226
Effective search space: 140976780
Effective search space used: 140976780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.2 bits)