RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
           domain {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 388

 Score = 33.1 bits (74), Expect = 0.006
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 26  NAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKM 69
           +           I ++  HV  G I  SRI+ A  RI+ +K  M
Sbjct: 313 DMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTM 356


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
          thermophilus [TaxId: 274]}
          Length = 174

 Score = 23.7 bits (51), Expect = 4.5
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 29 ADQQDPADVIELIYAHVKSGEIKPSRI 55
          A+  DP D + L    +  G +   R+
Sbjct: 63 AEDGDPLDGLVLSTYPLLPGVVVEVRV 89


>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin
          {Aquifex aeolicus [TaxId: 63363]}
          Length = 101

 Score = 23.4 bits (50), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 33 DPADVIELIYAHVKSGEI 50
           P DV E++  H+K GE 
Sbjct: 76 KPEDVDEIVEKHLKGGEP 93


>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 225

 Score = 23.5 bits (50), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 41  IYAHVKSGEIKPSRIESAYQRII 63
           +   V++GEI  SR E+ Y ++ 
Sbjct: 197 VKEAVENGEIAESRYEN-YVKMF 218


>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 57

 Score = 22.8 bits (49), Expect = 7.6
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 31 QQDPADVIELIYAHVKSGEIKPSRIESAYQRII 63
          ++D +  +EL+    +SGE+ P +++ A QR++
Sbjct: 4  ERDVSRAVELLERLQRSGELPPQKLQ-ALQRVL 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 263,687
Number of extensions: 9183
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 13
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)