Query gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 190 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Mon May 30 04:06:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781072.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam09628 YvfG YvfG protein. Y 74.1 4 0.0001 22.0 3.4 43 90-136 26-68 (68) 2 pfam11527 ARL2_Bind_BART The A 49.9 22 0.00056 16.9 3.9 36 125-160 45-81 (120) 3 PRK05352 Na(+)-translocating N 44.1 24 0.00061 16.6 2.9 45 134-178 397-447 (448) 4 PRK11106 queuosine biosynthesi 39.8 31 0.00078 15.9 3.1 52 131-182 162-227 (231) 5 pfam08231 SYF2 SYF2 splicing f 34.3 24 0.00061 16.7 1.7 19 123-141 138-156 (157) 6 COG5188 PRP9 Splicing factor 3 32.9 39 0.001 15.2 4.3 43 90-132 280-322 (470) 7 pfam06518 DUF1104 Protein of u 31.5 41 0.0011 15.0 4.3 71 79-161 42-123 (142) 8 PRK00957 methionine synthase; 29.2 45 0.0011 14.7 3.6 23 137-159 148-172 (307) 9 KOG3040 consensus 28.0 23 0.0006 16.7 0.8 43 112-154 18-70 (262) 10 TIGR01233 lacG 6-phospho-beta- 27.1 10 0.00027 19.1 -1.2 23 78-100 444-466 (473) 11 pfam07462 MSP1_C Merozoite sur 26.9 39 0.00098 15.2 1.7 14 86-99 153-166 (574) 12 TIGR00625 tfb2 Transcription f 25.9 51 0.0013 14.4 2.1 31 71-110 226-256 (507) 13 COG1689 Uncharacterized protei 24.6 54 0.0014 14.2 3.1 119 13-146 29-153 (274) 14 KOG4098 consensus 23.4 57 0.0015 14.0 3.8 26 115-140 87-112 (140) 15 TIGR02812 fadR_gamma fatty aci 22.8 58 0.0015 14.0 2.5 50 60-114 209-261 (275) 16 PRK10879 proline aminopeptidas 20.7 61 0.0016 13.8 1.7 37 98-137 164-200 (436) No 1 >pfam09628 YvfG YvfG protein. Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. Probab=74.14 E-value=4 Score=22.02 Aligned_cols=43 Identities=35% Similarity=0.490 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999995156710201999999999999988899999 Q gi|254781072|r 90 FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE 136 (190) Q Consensus 90 fkaltkyyksvvaelrefglgksaieieeitkavdtltrayneykke 136 (190) ..|+..||+||+..+-.-.+.|.|.-|. ....|..|||.-++| T Consensus 26 IhA~NaYYksV~~si~~Dqi~KNA~~ik----RiqHLdEAY~KV~~E 68 (68) T pfam09628 26 IHALNAYYKSVAGSILADQIAKNADLIK----RIQHLDEAYNKVAQE 68 (68) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC T ss_conf 9999999999999999999985089999----999899999987439 No 2 >pfam11527 ARL2_Bind_BART The ARF-like 2 binding protein BART. BART binds specifically to ARL2.GTP with a high affinity however it does not bind to ARL2.GDP. It is thought that this specific interaction is due to BART being the first identified ARL2-specific effector. The function is not completely characterized. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1. Probab=49.90 E-value=22 Score=16.92 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCHHCCCCCCCHHH Q ss_conf 9999888999999999999997-12102330101246 Q gi|254781072|r 125 TLTRAYNEYKKEIRELIEEFIE-LGFDQCDECDLCSE 160 (190) Q Consensus 125 tltrayneykkeirelieefie-lgfdqcdecdlcse 160 (190) .-|--||+|+.-+-.+|+.|+. +|+..-.=...|.. T Consensus 45 eyt~I~~ey~~lve~~l~~~l~~~g~~~~~f~~~~~~ 81 (120) T pfam11527 45 EYTEIHKEYKELIEKLLESFLKEVGISPEQFEEACLS 81 (120) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999999999999999998759999999999986 No 3 >PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional Probab=44.09 E-value=24 Score=16.63 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHCHHCCCC--CCCHH----HHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999712102330--10124----6788888777899999999 Q gi|254781072|r 134 KKEIRELIEEFIELGFDQCDE--CDLCS----EKADVIQKKRIAFEMVERE 178 (190) Q Consensus 134 kkeirelieefielgfdqcde--cdlcs----ekadviqkkriafemvere 178 (190) |--+-.-+|+..+||.-.|+| |.||| -|.|+-+--|-..++.+.| T Consensus 397 ka~~~~d~e~~e~lGi~e~~eED~alcsyvCpSK~e~~~i~r~~L~~~~kE 447 (448) T PRK05352 397 RALIAGDTDEAQALGALELDEEDLALCTFVCPGKYEYGPILRDCLDRIEKE 447 (448) T ss_pred HHHHCCCHHHHHHCCCCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHC T ss_conf 998706999998759903385364146458886124899999999999764 No 4 >PRK11106 queuosine biosynthesis protein QueC; Provisional Probab=39.83 E-value=31 Score=15.89 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHHCHH--------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999971210--------------23301012467888887778999999999986 Q gi|254781072|r 131 NEYKKEIRELIEEFIELGFD--------------QCDECDLCSEKADVIQKKRIAFEMVEREFAEK 182 (190) Q Consensus 131 neykkeirelieefielgfd--------------qcdecdlcsekadviqkkriafemverefaek 182 (190) +--|.||-.|.++-.+||++ .|..|+-|.+...-.+.-..-=..|-+-|-|| T Consensus 162 ~l~K~eiv~l~~~~~~L~~p~~~TwSCY~g~~g~~CG~C~sC~~R~~gF~e~~~~~p~~~~~~~~~ 227 (231) T PRK11106 162 WLDKAETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCAACHLRANGLNHYLANKPAVMAALKQK 227 (231) T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 788889999998616668650235527597999989989328889999999555881999999886 No 5 >pfam08231 SYF2 SYF2 splicing factor. Proteins in this family are involved in cell cycle progression and pre-mRNA splicing. Probab=34.34 E-value=24 Score=16.66 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999998889999999999 Q gi|254781072|r 123 VDTLTRAYNEYKKEIRELI 141 (190) Q Consensus 123 vdtltrayneykkeireli 141 (190) -.-|.|+|++|.+|||.-. T Consensus 138 NkKL~R~y~kYT~EIk~NL 156 (157) T pfam08231 138 NKKLDRFYDKYTAEIKQNL 156 (157) T ss_pred HHHHHHHHHHHHHHHHHHC T ss_conf 9999999988799998646 No 6 >COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification] Probab=32.94 E-value=39 Score=15.16 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999515671020199999999999998889 Q gi|254781072|r 90 FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNE 132 (190) Q Consensus 90 fkaltkyyksvvaelrefglgksaieieeitkavdtltrayne 132 (190) .+-+++|...++.+.|+|-+-+-||.-.|-...++.|+|-+-+ T Consensus 280 l~r~~kyl~d~~s~trs~V~r~la~ta~ER~aei~~l~r~~~~ 322 (470) T COG5188 280 LHRYLKYLGDPVSETRSLVLRSLAITAKERKAEISLLSRRKKQ 322 (470) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999998088667899999999987778888776898877645 No 7 >pfam06518 DUF1104 Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori. Probab=31.54 E-value=41 Score=15.01 Aligned_cols=71 Identities=28% Similarity=0.517 Sum_probs=42.9 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHH-HHHHHHHHHHHHHH---------HHHHH Q ss_conf 54656878899-999999999999999951567102019999999999999-88899999999999---------99971 Q gi|254781072|r 79 FYIDFRTELKY-FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTR-AYNEYKKEIRELIE---------EFIEL 147 (190) Q Consensus 79 fyidfrtelky-fkaltkyyksvvaelrefglgksaieieeitkavdtltr-ayneykkeirelie---------efiel 147 (190) =|+||+.|+.- .+.++ +.|-+.|--+-. +...++.|.+|- -|++|+++|||-+. |.-|. T Consensus 42 e~~Dy~~Ei~KR~~~m~------~~eak~F~~~~k----~~~~Kn~dkMSved~~k~rk~i~e~~~k~~~~Ms~kE~re~ 111 (142) T pfam06518 42 EVVDYRMEIKKRLKKMK------EEEAKNFHAQFK----KAMRKNLSKLSVEDRKKRRKEVREELQKKTKGMSAKEIREK 111 (142) T ss_pred HHHHHHHHHHHHHHHCC------HHHHHHHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC T ss_conf 44789999999997576------999999999999----99999898636999999999999999999874369999983 Q ss_pred CHHCCCCCCCHHHH Q ss_conf 21023301012467 Q gi|254781072|r 148 GFDQCDECDLCSEK 161 (190) Q Consensus 148 gfdqcdecdlcsek 161 (190) |++.|+. .|+.+ T Consensus 112 GL~~~~~--~~~g~ 123 (142) T pfam06518 112 GLNVCNN--VCSGK 123 (142) T ss_pred CCCCCCC--CCCCC T ss_conf 8972012--13587 No 8 >PRK00957 methionine synthase; Provisional Probab=29.24 E-value=45 Score=14.75 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHCHH--CCCCCCCHH Q ss_conf 99999999971210--233010124 Q gi|254781072|r 137 IRELIEEFIELGFD--QCDECDLCS 159 (190) Q Consensus 137 irelieefielgfd--qcdecdlcs 159 (190) ++.-|..+.+.|.+ |-||..+.. T Consensus 148 l~~Ei~~l~~aG~~~IQiDEP~l~~ 172 (307) T PRK00957 148 LAKEALALQKAGAAMIQIDEPILST 172 (307) T ss_pred HHHHHHHHHHCCCCEEEECCHHHHC T ss_conf 9999999997499889967557763 No 9 >KOG3040 consensus Probab=28.02 E-value=23 Score=16.70 Aligned_cols=43 Identities=37% Similarity=0.476 Sum_probs=28.2 Q ss_pred HHEEHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHCHHCCCC Q ss_conf 0201999999999999988----------899999999999999712102330 Q gi|254781072|r 112 SAIEIEEITKAVDTLTRAY----------NEYKKEIRELIEEFIELGFDQCDE 154 (190) Q Consensus 112 saieieeitkavdtltray----------neykkeirelieefielgfdqcde 154 (190) --||+..|.+|+..|.|-+ |+-|+.-|+|.+..+.||||--.+ T Consensus 18 Lh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~ee 70 (262) T KOG3040 18 LHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEE 70 (262) T ss_pred EECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHH T ss_conf 76045668777999999974672699975676026899999999817775578 No 10 >TIGR01233 lacG 6-phospho-beta-galactosidase; InterPro: IPR005928 6-phospho-beta-galactosidase (3.2.1.85 from EC) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.A 6-phospho-beta-D-galactoside + H2O = an alcohol + 6-phospho-D-galactose The genes coding for the enzymes of the tagatose 6-phosphate pathway have been found to be part of the lac operon together with the genes coding for the lactose-phosphotransferase system and the phospho-beta-galactosidase in Lactococcus lactis, Staphlococcus aureus, and Streptococcus mutans. ; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0019512 lactose catabolic process via tagatose-6-phosphate. Probab=27.10 E-value=10 Score=19.13 Aligned_cols=23 Identities=39% Similarity=0.876 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55465687889999999999999 Q gi|254781072|r 78 AFYIDFRTELKYFKALTKYYKSV 100 (190) Q Consensus 78 afyidfrtelkyfkaltkyyksv 100 (190) -||+||.|.-.|.|.-..+||+| T Consensus 444 LFyVDF~TQ~RY~K~SA~WyK~~ 466 (473) T TIGR01233 444 LFYVDFDTQERYIKKSAEWYKKL 466 (473) T ss_pred CEEEECCCCCCCCCHHHHHHHHC T ss_conf 35775661235310005776410 No 11 >pfam07462 MSP1_C Merozoite surface protein 1 (MSP1) C-terminus. This family represents the C-terminal region of merozoite surface protein 1 (MSP1) which are found in a number of Plasmodium species. MSP-1 is a 200-kDa protein expressed on the surface of the P. vivax merozoite. MSP-1 of Plasmodium species is synthesized as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19-kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate. Probab=26.92 E-value=39 Score=15.21 Aligned_cols=14 Identities=57% Similarity=0.952 Sum_probs=11.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88999999999999 Q gi|254781072|r 86 ELKYFKALTKYYKS 99 (190) Q Consensus 86 elkyfkaltkyyks 99 (190) -|||+||+.|||-+ T Consensus 153 LLKyYKar~KYY~g 166 (574) T pfam07462 153 LLKYYKARVKYYTG 166 (574) T ss_pred HHHHHHHHHHHHCC T ss_conf 99999998888528 No 12 >TIGR00625 tfb2 Transcription factor tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0003702 RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0005634 nucleus. Probab=25.86 E-value=51 Score=14.39 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=22.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9786346554656878899999999999999999951567 Q gi|254781072|r 71 SPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLG 110 (190) Q Consensus 71 spkelskafyidfrtelkyfkaltkyyksvvaelrefglg 110 (190) +--+|.||+-||+-++ --.-..-.||||||- T Consensus 226 g~l~lGkaYsvd~lsd---------t~~imLqdlReyGLV 256 (507) T TIGR00625 226 GALELGKAYSVDALSD---------TQRIMLQDLREYGLV 256 (507) T ss_pred HHHHCCCHHEEHHHHH---------HHHHHHHHHHHHCCE T ss_conf 2543142000025548---------999999975630754 No 13 >COG1689 Uncharacterized protein conserved in archaea [Function unknown] Probab=24.56 E-value=54 Score=14.19 Aligned_cols=119 Identities=27% Similarity=0.314 Sum_probs=60.3 Q ss_pred CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHH Q ss_conf 2186200002342220444----44399999999999999998776666554455533113697863465-546568788 Q gi|254781072|r 13 SKIPDAKFGSFLQIRSKES----VINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKA-FYIDFRTEL 87 (190) Q Consensus 13 skipdakfgsflqirskes----vinkefvtkveelyekaqkahkkrdkvygaydkvsshkkspkelska-fyidfrtel 87 (190) +..||.--..|..|++-++ |-.+| ..+|-||...|.+--.- |+.-.+-.--..+.+.+. |-. .-+ T Consensus 29 ~~Lpdti~~TyYAi~i~s~lg~evPr~E--ktiefL~d~~qt~~~~~-----a~~~~~l~~lg~~d~~r~~~~l---~~~ 98 (274) T COG1689 29 SQLPDTINDTYYAIKIYSLLGHEVPRKE--KTIEFLYDQMQTAGVGV-----AMAIEFLRILGAKDLARNKMLL---LFL 98 (274) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCCCCHHHHHH---HHH T ss_conf 0675132200121124665077675088--89999998888765679-----9999999874344424026888---876 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 99999999999999999951567102019999999999999888-999999999999997 Q gi|254781072|r 88 KYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYN-EYKKEIRELIEEFIE 146 (190) Q Consensus 88 kyfkaltkyyksvvaelrefglgksaieieeitkavdtltrayn-eykkeirelieefie 146 (190) ||+++-.||--+.-.- -+|| ++ .--|+|--++++-+.+| +|-.|++++|-+|.. T Consensus 99 ~~~~~e~Kf~~~lggs-~~f~---t~-~~Le~ty~~~~~l~~~n~~~~eE~k~~v~~~~r 153 (274) T COG1689 99 KYNPLEEKFAVGLGGS-EEFG---TA-TPLEATYWMMSALNMVNYEYLEEMKEKVIEFVR 153 (274) T ss_pred HCCCHHHHHHHHCCCE-EECC---CC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 3374357786512761-0027---88-458999999999997186731778999999956 No 14 >KOG4098 consensus Probab=23.39 E-value=57 Score=14.04 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=14.3 Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 19999999999999888999999999 Q gi|254781072|r 115 EIEEITKAVDTLTRAYNEYKKEIREL 140 (190) Q Consensus 115 eieeitkavdtltrayneykkeirel 140 (190) .++.|++.+..|+..+-.-.||..+. T Consensus 87 nke~i~~~i~~l~~qL~~k~kElnkf 112 (140) T KOG4098 87 NKENIEKVIKKLTDQLVQKGKELNKF 112 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 18889999999999999999999998 No 15 >TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process. Probab=22.78 E-value=58 Score=13.96 Aligned_cols=50 Identities=26% Similarity=0.464 Sum_probs=33.9 Q ss_pred HHHHHHHHCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHE Q ss_conf 4455533113-697--863465546568788999999999999999999515671020 Q gi|254781072|r 60 GAYDKVSSHK-KSP--KELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAI 114 (190) Q Consensus 60 gaydkvsshk-ksp--kelskafyidfrtelkyfkaltkyyksvvaelrefglgksai 114 (190) |-|++|.+|= .+| .||++.||.+.+.- +...-+..|+.-+|.+|.--|+| T Consensus 209 glY~RiG~yYF~~peaReLA~~FY~~L~~l-----c~~~~~d~v~~~~R~YG~~Sg~i 261 (275) T TIGR02812 209 GLYTRIGLYYFASPEARELALQFYKELQEL-----CKAGEHDEVPDLIRQYGIESGAI 261 (275) T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHCHHHHHH T ss_conf 455555110158878889999998999999-----72058126899998718247999 No 16 >PRK10879 proline aminopeptidase P II; Provisional Probab=20.66 E-value=61 Score=13.82 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=28.1 Q ss_pred HHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999951567102019999999999999888999999 Q gi|254781072|r 98 KSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEI 137 (190) Q Consensus 98 ksvvaelrefglgksaieieeitkavdtltrayneykkei 137 (190) .+.+.+||- =||.-||+.|.+|.+--..|+.+--+.+ T Consensus 164 ~~li~elR~---IKs~~EI~~mr~A~~It~~a~~~~m~~~ 200 (436) T PRK10879 164 RPWVHEMRL---FKSPEEIAVLRRAGEISALAHTRAMEKC 200 (436) T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 889999866---7999999999999999999999998536 Done!